| Literature DB >> 35585931 |
Ji Seon Kim1, Yoonhee Cho1, Ki Hyeong Park1, Ji Hyun Park2, Minkyeong Kim3, Chang Sun Kim4, Young Woon Lim1.
Abstract
Collybiopsis is a genus of the gymnopoid/marasmioid complex of the family Omphalotaceae. The classification system of Collybiopsis has recently undergone large changes through molecular approaches. The new classification system has not been applied for Collybiopsis in the Republic of Korea, and general research on this genus was also lacking. In this study, we analyzed the Collybiopsis species in the Republic of Korea by assessing all gymnopoid/marasmioid specimens collected nationwide for ten years by combining morphological approaches and multilocus (ITS + nrLSU) phylogenetic analysis. We thus confirmed that 16 species of Collybiopsis are present in the Republic of Korea, including two previously unreported species (Co.nonnulla and Co.dichroa) and seven new species (Co.albicantipes sp. nov., Co.clavicystidiata sp. nov., Co.fulva sp. nov., Co.orientisubnuda sp. nov., Co.subumbilicata sp. nov., Co.undulata sp. nov., and Co.vellerea sp. nov.). A thorough examination of the Collybiopsis suggested that it is difficult to distinguish or identify the species based on morphological characteristics only; a combined molecular approach is needed for accurate identification. The Collybiopsis database of the Republic of Korea is updated, and information on the new species is provided. Five new combinations from Marasmiellus to Collybiopsis are also proposed (Co.istanbulensis comb. nov., Co.koreana comb. nov., Co.omphalodes comb. nov., Co.pseudomphalodes comb. nov., and Co.ramuliciola comb. nov.). Ji Seon Kim, Yoonhee Cho, Ki Hyeong Park, Ji Hyun Park, Minkyeong Kim, Chang Sun Kim, Young Woon Lim.Entities:
Keywords: Collybia; Gymnopus; ITS; Marasmiellus; gymnopoid; marasmioid; nrLSU
Year: 2022 PMID: 35585931 PMCID: PMC9005495 DOI: 10.3897/mycokeys.88.79266
Source DB: PubMed Journal: MycoKeys ISSN: 1314-4049 Impact factor: 2.984
Information about the specimens and published sequences used in phylogenetic analysis. Species with an asterisk are those proposed as new species. Sequences newly produced in this study are presented in bold.
| Organisms | Specimen | Collection Date | Location | GenBank Accession Number | |
|---|---|---|---|---|---|
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| 25.7.2017 | Yeosu-si, Jeollanam-do, the Republic of Korea |
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| |
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| 4.7.2018 | Jindo-gun, Jeollanam-do, the Republic of Korea |
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| |
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| TFB14251 | USA: Tennessee, GSMNP |
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| TFB13890 | USA: North Carolina |
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| TFB13814 | USA: Tennessee |
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| 15.7.2014 | Suncheon, Jeollanam-do, the Republic of Korea |
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| 13.7.2016 | Sinan-gun, Jeollanam-do, the Republic of Korea |
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| 4.7.2018 | Wando-gun, Jeollanam-do, the Republic of Korea |
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| 31.8.2018 | Jindo-gun, Jeollanam-do, the Republic of Korea |
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| |
|
| AWW01 | Java/Bali |
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| TFB5787 | Canada: British Columbia |
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| 5.7.2018 | Haenam-gun, Jeollanam-do, the Republic of Korea |
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| 5.7.2018 | Jindo-gun, Jeollanam-do, the Republic of Korea |
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| 5.7.2018 | Jindo-gun, Jeollanam-do, the Republic of Korea |
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| 13.7.2018 | Gwanak-gu, Seoul, the Republic of Korea |
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| 31.7.2019 | Taebaek-si, Gangwon-do, the Republic of Korea |
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| 31.7.2019 | Taebaek-si, Gangwon-do, the Republic of Korea |
|
| |
| TFB14115 | Germany, Thuringia |
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| 110116MFBPL0425 | China |
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| HMAS 290186 | China |
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| TFB14409 | Canada: New Brunswick |
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| TFB14075 | USA: North Carolina |
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| 19.8.2014 | Hwasun-gun, Jeollanam-do, the Republic of Korea |
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| 10.7.2018 | Cheongdo-gun, Gyeongsangbuk-do, the Republic of Korea |
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| 12.7.2018 | Gwangju, Gyeonggi-do, the Republic of Korea |
|
| |
| TFB9623 | USA: North Carolina |
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| TENN60014c2 | USA: Tennessee, GSMNP |
| |||
| TFB7920 | USA |
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| TENN61624c1a | USA: Tennessee, GSMNP |
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| TFB2028 | USA |
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| TENN61624c9 | USA: Tennessee, GSMNP |
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|
| TFB14339 | USA: Connecticut |
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| TFB14281 | USA: Mississippi |
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| 09-09-26AV13 | Canada: Newfoundland |
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| MICH:PK6975 | Alaska |
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| FB9699 | Costa Rica |
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| TFB13962 | USA: Tennessee |
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| CUH AM090 | India |
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| CUM AM101 | India |
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| 19.6.2013 | Geochang-gun, Gyeongsangnam-do, the Republic of Korea |
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| 10.7.2013 | Pocheon-si, Gyeonggi-do, the Republic of Korea |
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| 21.7.2015 | Pocheon-si, Gyeonggi-do, the Republic of Korea |
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| TFB4796 | USA: Georgia |
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| MEL:2382838 | Australia |
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| URM 90012 | Brazil |
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| TFB11846 | Russia: Kedrovaya |
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| TFB11847 | Russia |
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|
| AWW04 | Unknown |
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|
| KATO | Turkey |
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| BRNM 781163 | Turkey |
| |||
|
| TFB9889 | USA: Louisiana |
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| TFB10782 | Argentina: Missiones |
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| 21.8.2012 | Boryeong-si, Chungcheongnam-do, the Republic of Korea |
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| 11.7.2013 | Pyeongchang-gun, Gangwon-do, the Republic of Korea |
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| 21.7.2015 | Inje-gun, Gangwon-do, the Republic of Korea |
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| BRNM 714972 | Korea |
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| BRNM 718782 | Korea |
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| 4.9.2018 | Ongjin-gun, Incheon, the Republic of Korea |
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| 31.7.2019 | Taebaek-si, Gangwon-do, the Republic of Korea |
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| TFB10350 | USA: North Carolina |
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| ZD16102301 | China |
| |||
| TFB9121 | USA: Louisiana |
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| ||
|
| AWW54 | Java/Bali |
|
| |
| CUH AM093 | India |
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| 11.8.2015 | Guri-si, Gyeonggi-do, the Republic of Korea |
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| 5.9.2018 | Anyang City, Gyeonggi Province, the Republic of Korea |
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| SFSU: DED5866 | Hawaii |
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| CUH:AM074 | India |
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| SFSU-AWW15 | Java/Bali |
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| TFB11005 | Costa Rica |
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| REH7379 | Costa Rica |
| |||
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| TENN 68165 | ||||
| TFB14282 | |||||
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| TFB11930 | USA: Tennessee, GSMNP |
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| |
| TFB5434 | USA: South Carolina |
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| TFB10416 | Costa Rica |
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| 20.6.2013 | Geochang-gun, Gyeongsangnam-do, the Republic of Korea |
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| 21.8.2013 | Geochang-gun, Gyeongsangnam-do, the Republic of Korea |
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| 14.7.2015 | Gangneung-si, Gangwon-do, the Republic of Korea |
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| TFB14492 | USA: Mississippi |
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| TFB14278 | USA: Mississippi |
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| AWW05 | Java/Bali |
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| AWW55 | Java/Bali |
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| RAK369.2 | Cameroon |
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| RAK372.2 | Cameroon |
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| GB-0150514 | Norway: Svalbard |
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| FB11021 | Costa Rica |
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| TFB 10427 | Costa Rica |
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| TFB 10022 | Costa Rica |
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| 19.7.2016 | Ulleung-gun, Gyeongsangbuk-do, the Republic of Korea |
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| 23.8.2017 | Hapcheon-gun, Gyeongsangnam-do, the Republic of Korea |
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| 30.8.2018 | Hapcheon-gun, Gyeongsangnam-do, the Republic of Korea |
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| (as | KUC20150911-19 | Korea |
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| TFB10419 | Costa Rica |
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| TFB10422 | Costa Rica |
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| TFB13743 | Belgium |
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| LE-Bin1364 | Russia |
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| CBS 223.37 | unknown |
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| 7.8.2017 | Hapcheon-gun, Gyeongsangnam-do, the Republic of Korea |
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| 5.9.2018 | Gwanak-gu, Seoul, the Republic of Korea |
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| 29.6.2021 | Gwanak-gu, Seoul, the Republic of Korea |
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| PR2542TN | Puerto Rico |
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| CUH:AM082 | India |
|
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| URM 90015 | Brazil: Amapa |
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| MHHNU 30912 | China |
| |||
| TFB9628 | Puerto Rico |
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| SFC20120821-64 | Korea |
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| HFJAU 0425 | China: Jiangxi |
| |||
| (as | KUC20140804-02 | Korea |
| ||
|
| TFB14290 | USA: Mississippi |
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|
| REH7348 | Costa Rica |
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| PR24TN | Puerto Rico |
| |||
|
| TFB14570 | Slovakia |
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| TFB14615 | USA: California |
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| 29.7.2020 | Jeongseon-gun, Gangwon-do, the Republic of Korea |
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| TFB13769 | Belgium: Couvin |
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| TFB13770 | Belgium: Couvin |
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| DED4425 | USA: North Carolina |
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| TFB14555 | Slovakia |
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| BR 72_41 | Belgium |
|
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| GDGM 43884 | China |
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| GDGM 44256 | China |
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| GDGM 50060 | China |
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| TFB7571 | New Zealand |
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| PDD:95844 | New Zealand |
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| TFB13998 | USA: Tennessee, |
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| TFB4798 | USA: Georgia |
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| TFB9629 | ||||
| URM 90023 | Brazil: Para |
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| URM 90022 | Brazil: Para |
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| TFB12577 | USA: Tennessee, GSMNP |
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| WRW 08-462 | USA: West Virginia |
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| TFB14043 | USA: North Carolina |
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| BRNM781138 | Portugal: Madeira |
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| TFB11063 | USA |
| |||
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| 2.8.2012 | Goseong-gun, Gangwon-do, the Republic of Korea |
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| 1.7.2014 | Inje-gun, Gangwon-do, the Republic of Korea |
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| 2.9.2015 | Ulleung-gun, Gyeongsangbuk-do, the Republic of Korea |
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| 22.8.2017 | Ulleung-gun, Gyeongsangbuk-do, the Republic of Korea |
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| AWW51 | Indonesia |
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| 21.8.2012 | Boryeong-si, Chungcheongnam-do, the Republic of Korea |
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| 8.8.2013 | Sangju-si, Gyeongsangbuk-do, the Republic of Korea |
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| 13.8.2015 | Goyang-si, Gyeonggi-do, the Republic of Korea |
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| TFB14334h1 | USA: Connecticut |
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| WRW05-1170 | USA: West Virginia |
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| 4.9.2018 | Ongjin-gun, Incheon, the Republic of Korea |
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| |
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| 8.7.2012 | Seosan-si, Chungcheongnam-do, the Republic of Korea |
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| |
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| 21.8.2014 | Gwanak-gu, Seoul, the Republic of Korea |
|
| |
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| 5.7.2018 | Jindo-gun, Jeollanam-do, the Republic of Korea |
|
| |
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| TFB13739 | USA: Tennessee, GSMNP |
|
| |
|
| TFB9539 | USA |
| ||
| TFB12836 | New Zealand: Fiordland |
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| ||
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| 29.8.2018 | Shinan-gun, Jeollanam-do, the Republic of Korea |
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|
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| TFB 14382 | Canada: New Brunswick |
|
| |
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| REH7007 | Costa Rica |
| ||
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| TFB 13989 | USA: Mississippi |
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| |
Figure 1.Phylogenetic tree based on maximum likelihood analysis using combined sequence data of ITS and nrLSU. ML bootstrap values greater than 70% are indicated at the nodes. species that were newly sequenced in this study are represented in bold. Species with an asterisk are those proposed as new species.
Identification information of Korean specimens confirmed in the study. Scientific names in bold indicate new species.
| Species | Specimen Number | ||||
|---|---|---|---|---|---|
|
| SFC20170725-35 | SFC20180704-86 | |||
|
| NIBRFG0000502789 | KA14-0259 | KA14-0526 | KA14-0917 | KA14-0924 |
| KA16-0307 | KA16-0371 | KA16-0526 | KA18-0657 | KA18-0673 | |
| SFC20140724-41 | SFC20160719-42 | SFC20180704-36 | SFC20180706-05 | SFC20180831-13 | |
| SFC20180831-16 | |||||
|
| KA14-0667 | KA14-0724 | KA15-0211 | KA17-0287 | KA17-0369 |
| KA18-0282 | KA18-0353 | SFC20180705-84 | SFC20180705-92 | SFC20180706-04 | |
| SFC20180713-09 | |||||
|
| NIBRFG0000508913 | NIBRFG0000508991 | KA16-0696 | KA18-0338 | SFC20150626-26 |
| SFC20190731-06 | SFC20190731-32 | SFC20190731-34 | SFC20190731-48 | ||
|
| KA14-0969 | KA17-0344 | SFC20180706-60 | SFC20180712-16 | |
|
| KA13-0215 | KA13-0216 | KA13-0333 | KA13-0357 | KA14-0168 |
| KA14-0386 | KA14-0666 | KA14-0691 | KA15-0210 | KA16-0425 | |
| KA16-0428 | KA17-0388 | KA17-0596 | KA18-0233 | KA18-0241 | |
|
| SFC20120821-84 | SFC20150702-25 | SFC20170713-06 | SFC20180704-17 | |
|
| NIBRFG0000502888 | SFC20190731-18 | SFC20190731-08 | SFC20190730-36 | SFC20180907-105 |
| SFC20180905-86 | SFC20180905-43 | KA18-0321 | KA14-0579 | ||
|
| NIBRFG0000502876 | KA13-0887 | KA14-0494 | KA14-0510 | SFC20150811-29 |
| SFC20160719-15 | SFC20180905-33 | ||||
|
| KA13-0254 | KA13-0741 | KA15-0129 | ||
|
| SFC20170823-39 | SFC20170708-14 | SFC20150902-01 | SFC20150820-59 | SFC20150820-01 |
| SFC20150811-48 | SFC20150701-100 | QM20200911-57 | QM20200911-52 | KA17-0787 | |
| KA17-0600 | KA16-1154 | KA16-0925 | KA16-0902 | KA16-0780 | |
| KA16-0724 | KA15-0179 | KA14-0985 | KA13-1225 | F20200730-24 | |
| F20200701-11 | F20200630-30 | F20180904KCM21 | F20160719-12 | ||
|
| KA13-0506 | KA13-0956 | KA13-1101 | KA13-1333 | KA14-0904 |
| KA14-1089 | KA14-1092 | KA18-0115 | KA18-0724 | QM20200721-07 | |
| NIBRFG0000508098 | NIBRFG0000508059 | NIBRFG0000508089 | SFC20170712-08 | SFC20170807-35 | |
| SFC20170822-66 | SFC20180905-49 | SFC20180905-63 | |||
|
| SFC20130711-05 | ||||
|
| KA13-1214 | KA15-0173 | KA15-0185 | KA15-0787 | SFC20120802-03 |
| SFC20140701-03 | SFC20150902-50 | SFC20170822-14 | SFC20210623-03 | ||
|
| KA17-0335 | KA18-0651 | KA18-0651 | SFC20120821-04 | SFC20130808-08 |
| SFC20150715-24 | SFC20150813-04 | ||||
|
| KA14-0132 | KA14-0163 | KA14-0196 | KA14-0245 | KA14-0397 |
| KA14-0412 | KA14-0446 | KA14-0447 | KA14-0474 | KA14-0725 | |
| KA14-0734 | KA14-0735 | KA14-0774 | KA14-0787 | KA14-1005 | |
| KA14-1061 | KA14-1147 | KA14-1349 | KA14-1426 | KA14-1475 | |
| KA14-1555 | KA14-1558 | KA15-0213 | KA15-0215 | KA15-0473 | |
| KA15-0485 | KA15-0502 | KA15-0527 | KA15-0568 | KA16-0191 | |
| KA16-0252 | KA16-0485 | KA16-0783 | KA16-0982 | KA16-0985 | |
| KA16-0986 | KA16-0992 | KA17-0368 | KA17-0586 | KA17-0742 | |
| KA17-1074 | KA18-0089 | KA18-0139 | KA18-0151 | KA18-0152 | |
| KA18-0348 | KA18-0795 | KA18-0836 | KA18-0987 | KA18-1027 | |
| KA19-0125 | SFC20120708-02 | SFC20120820-02 | SFC20140821-29 | SFC20150630-38 | |
| SFC20150714-01 | SFC20170705-06 | SFC20180705-90 | SFC20180829-30 | SFC20180901-01 | |
|
| F20200729-14 | ||||
Figure 2.Basidiomata of the described species in the Republic of Korea A (SFC20180706–05) B (SFC20190731–06) C (KA18–0389) D (SFC20180704–17) E (SFC20190731–18) F (SFC20150811–29) G (KA13–0254) H (SFC20170712–08) I (SFC20180829–20). Scale bar: 1 cm (A–I).
Figure 3.Basidiomata and microscopic characters of the four new species A, B (SFC20170725–35) C, D (SFC20180705–84) E, F (KA15–0210) G, H (NIBRFG0000502862). Scale bars: 1cm (A, C, E, G); 20 µm (B, D, F, H). Abbreviations: s basidiospores; b basidia; ch cheilocystidia; p pleurocystidia; ca caulocystidia.
Figure 4.Basidiomata and microscopic characters of the three new species A, B (SFC20120802–03) C, D (SFC20150813–04) E, F (SFC20140821–29). Scale bars: 1cm (A, C, E); 20 µm (B, D, F). Abbreviations: s basidiospores; b basidia; ch cheilocystidia; p pleurocystidia; ca caulocystidia.
| 1 | Pileus < 25 mm diam |
|
| – | Pileus > 25 mm diam |
|
| 2 | Lamellae subdistant to distant (10–30) |
|
| – | Lamellae close to crowded (> 30) |
|
| 3 | Basidiomes on bark, branch, or woody debris |
|
| – | Basidiomes on duff or on soil |
|
| 4 | Pleurocystidia present |
|
| – | Pleurocystidia absent |
|
| 5 | Stipe base covered with dense whitish basal tomentum |
|
| – | Stipe base not covered with whitish basal tomentum |
|
| 6 | Pileipellis composed of a coarse |
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| – | Pileipellis composed of a cylindrical, often sub-inflated hyphae, not a |
|
| 7 | Pileus distinctly sulcate. Stipe base covered with dense whitish basal tomentum |
|
| – | Pileus slightly sulcate. Stipe base covered with weak whitish basal tomentum |
|
| 8 | Stipe < 2 cm long. Q value of basidiospores 1.6–2.2 |
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| – | Stipe > 2 cm long. Q value of basidiospores 2.0–3.1 |
|
| 9 | Lamellae crowded (> 100) |
|
| – | Lamellae close to crowded (< 100) |
|
| 10 | Basidia > 22 µm long |
|
| – | Basidia < 22 µm long |
|
| 11 | Lamellae subdistant to distant (10–38) |
|
| – | Lamellae close (> 38) |
|
| 12 | Pleurocystidia present |
|
| – | Pleurocystidia absent |
|
| 13 | Q value of basidiospores > 2.2 |
|
| – | Q value of basidiospores < 2.2 |
|
| 14 | Pileus convex, hemispherical, plano-convex to flat. Cheilocystidia utriform and clavate |
|
| – | Pileus convex to broad-convex. Cheilocystidia narrowly clavate |
|
| 15 | Pleurocystidia present |
|
| – | Pleurocystidia absent |
|