Literature DB >> 12912839

MrBayes 3: Bayesian phylogenetic inference under mixed models.

Fredrik Ronquist1, John P Huelsenbeck.   

Abstract

MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.

Mesh：

Year:  2003        PMID： 12912839     DOI： 10.1093/bioinformatics/btg180

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  2000 in total

1.  Locus Mapping, Molecular Cloning, and Expression Analysis of rps6kb2, a Novel Metamorphosis-Related Gene in Chinese Tongue Sole (Cynoglossus semilaevis).

Authors:  Yang Liu; Min Wei; Hua Guo; Changwei Shao; Liang Meng; Wenteng Xu; Na Wang; Lei Wang; Deborah M Power; Jilun Hou; Shahid Mahboob; Zhongkai Cui; Yingming Yang; Yangzhen Li; Fazhen Zhao; Songlin Chen
Journal:  Mar Biotechnol (NY)       Date:  2017-08-05       Impact factor: 3.619

2.  Agent-based and phylogenetic analyses reveal how HIV-1 moves between risk groups: injecting drug users sustain the heterosexual epidemic in Latvia.

Authors:  Frederik Graw; Thomas Leitner; Ruy M Ribeiro
Journal:  Epidemics       Date:  2012-05-02       Impact factor: 4.396

3.  Phylogenetic position and peculiar genetic traits of a midgut bacterial symbiont of the stinkbug Parastrachia japonensis.

Authors:  Takahiro Hosokawa; Yoshitomo Kikuchi; Naruo Nikoh; Xian-Ying Meng; Mantaro Hironaka; Takema Fukatsu
Journal:  Appl Environ Microbiol       Date:  2010-05-07       Impact factor: 4.792

4.  Novel betapapillomavirus associated with hand and foot papillomas in a cynomolgus macaque.

Authors:  C E Wood; S H Tannehill-Gregg; Z Chen; K van Doorslaer; D R Nelson; J M Cline; R D Burk
Journal:  Vet Pathol       Date:  2010-10-04       Impact factor: 2.221

5.  On the reliability of fungal materials used in studies on Ophiocordyceps sinensis.

Authors:  C-H Dong; Y-J Yao
Journal:  J Ind Microbiol Biotechnol       Date:  2010-10-05       Impact factor: 3.346

6.  Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.

Authors:  Víctor Castro-Fernandez; Alejandra Herrera-Morande; Ricardo Zamora; Felipe Merino; Felipe Gonzalez-Ordenes; Felipe Padilla-Salinas; Humberto M Pereira; Jose Brandão-Neto; Richard C Garratt; Victoria Guixe
Journal:  J Biol Chem       Date:  2017-07-18       Impact factor: 5.157

7.  Description of Enchodorus yeatsi n. sp. (Dorylaimida, Nordiidae) from Southern Iran and Its Molecular Phylogenetic Study.

Authors:  Majid Pedram
Journal:  J Nematol       Date:  2017-03       Impact factor: 1.402

8.  Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes.

Authors:  Luca Pozzi; Jason A Hodgson; Andrew S Burrell; Kirstin N Sterner; Ryan L Raaum; Todd R Disotell
Journal:  Mol Phylogenet Evol       Date:  2014-02-28       Impact factor: 4.286

9.  Fumarole-supported islands of biodiversity within a hyperarid, high-elevation landscape on Socompa Volcano, Puna de Atacama, Andes.

Authors:  Elizabeth K Costello; Stephan R P Halloy; Sasha C Reed; Preston Sowell; Steven K Schmidt
Journal:  Appl Environ Microbiol       Date:  2008-12-12       Impact factor: 4.792

10.  A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution.

Authors:  Robert J Gifford; Aris Katzourakis; Michael Tristem; Oliver G Pybus; Mark Winters; Robert W Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205
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