Literature DB >> 32929287

Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.

Valeria Orrù1, Maristella Steri1, Carlo Sidore1, Michele Marongiu1, Valentina Serra1, Stefania Olla1, Gabriella Sole1, Sandra Lai1, Mariano Dei1, Antonella Mulas1, Francesca Virdis1, Maria Grazia Piras1, Monia Lobina1, Mara Marongiu1, Maristella Pitzalis1, Francesca Deidda1, Annalisa Loizedda1, Stefano Onano1,2, Magdalena Zoledziewska1, Stephen Sawcer3, Marcella Devoto4,5, Myriam Gorospe6, Gonçalo R Abecasis7, Matteo Floris1,2, Mauro Pala1, David Schlessinger6, Edoardo Fiorillo1, Francesco Cucca8,9.   

Abstract

We report on the influence of ~22 million variants on 731 immune cell traits in a cohort of 3,757 Sardinians. We detected 122 significant (P < 1.28 × 10-11) independent association signals for 459 cell traits at 70 loci (53 of them novel) identifying several molecules and mechanisms involved in cell regulation. Furthermore, 53 signals at 36 loci overlapped with previously reported disease-associated signals, predominantly for autoimmune disorders, highlighting intermediate phenotypes in pathogenesis. Collectively, our findings illustrate complex genetic regulation of immune cells with highly selective effects on autoimmune disease risk at the cell-subtype level. These results identify drug-targetable pathways informing the design of more specific treatments for autoimmune diseases.

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Year:  2020        PMID: 32929287      PMCID: PMC8517961          DOI: 10.1038/s41588-020-0684-4

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  59 in total

1.  Overexpression of the Cytokine BAFF and Autoimmunity Risk.

Authors:  Maristella Steri; Valeria Orrù; M Laura Idda; Maristella Pitzalis; Mauro Pala; Ilenia Zara; Carlo Sidore; Valeria Faà; Matteo Floris; Manila Deiana; Isadora Asunis; Eleonora Porcu; Antonella Mulas; Maria G Piras; Monia Lobina; Sandra Lai; Mara Marongiu; Valentina Serra; Michele Marongiu; Gabriella Sole; Fabio Busonero; Andrea Maschio; Roberto Cusano; Gianmauro Cuccuru; Francesca Deidda; Fausto Poddie; Gabriele Farina; Mariano Dei; Francesca Virdis; Stefania Olla; Maria A Satta; Mario Pani; Alessandro Delitala; Eleonora Cocco; Jessica Frau; Giancarlo Coghe; Lorena Lorefice; Giuseppe Fenu; Paola Ferrigno; Maria Ban; Nadia Barizzone; Maurizio Leone; Franca R Guerini; Matteo Piga; Davide Firinu; Ingrid Kockum; Izaura Lima Bomfim; Tomas Olsson; Lars Alfredsson; Ana Suarez; Patricia E Carreira; Maria J Castillo-Palma; Joseph H Marcus; Mauro Congia; Andrea Angius; Maurizio Melis; Antonio Gonzalez; Marta E Alarcón Riquelme; Berta M da Silva; Maurizio Marchini; Maria G Danieli; Stefano Del Giacco; Alessandro Mathieu; Antonello Pani; Stephen B Montgomery; Giulio Rosati; Jan Hillert; Stephen Sawcer; Sandra D'Alfonso; John A Todd; John Novembre; Gonçalo R Abecasis; Michael B Whalen; Maria G Marrosu; Alessandra Meloni; Serena Sanna; Myriam Gorospe; David Schlessinger; Edoardo Fiorillo; Magdalena Zoledziewska; Francesco Cucca
Journal:  N Engl J Med       Date:  2017-04-27       Impact factor: 91.245

Review 2.  Immune reconstitution after haploidentical hematopoietic stem cell transplantation.

Authors:  Ying-Jun Chang; Xiao-Yu Zhao; Xiao-Jun Huang
Journal:  Biol Blood Marrow Transplant       Date:  2013-12-04       Impact factor: 5.742

3.  Genetic variants regulating immune cell levels in health and disease.

Authors:  Valeria Orrù; Maristella Steri; Gabriella Sole; Carlo Sidore; Francesca Virdis; Mariano Dei; Sandra Lai; Magdalena Zoledziewska; Fabio Busonero; Antonella Mulas; Matteo Floris; Wieslawa I Mentzen; Silvana A M Urru; Stefania Olla; Michele Marongiu; Maria G Piras; Monia Lobina; Andrea Maschio; Maristella Pitzalis; Maria F Urru; Marco Marcelli; Roberto Cusano; Francesca Deidda; Valentina Serra; Manuela Oppo; Rosella Pilu; Frederic Reinier; Riccardo Berutti; Luca Pireddu; Ilenia Zara; Eleonora Porcu; Alan Kwong; Christine Brennan; Brendan Tarrier; Robert Lyons; Hyun M Kang; Sergio Uzzau; Rossano Atzeni; Maria Valentini; Davide Firinu; Lidia Leoni; Gianluca Rotta; Silvia Naitza; Andrea Angius; Mauro Congia; Michael B Whalen; Chris M Jones; David Schlessinger; Gonçalo R Abecasis; Edoardo Fiorillo; Serena Sanna; Francesco Cucca
Journal:  Cell       Date:  2013-09-26       Impact factor: 41.582

4.  Variation in the human immune system is largely driven by non-heritable influences.

Authors:  Petter Brodin; Vladimir Jojic; Tianxiang Gao; Sanchita Bhattacharya; Cesar J Lopez Angel; David Furman; Shai Shen-Orr; Cornelia L Dekker; Gary E Swan; Atul J Butte; Holden T Maecker; Mark M Davis
Journal:  Cell       Date:  2015-01-15       Impact factor: 41.582

5.  Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors.

Authors:  Etienne Patin; Milena Hasan; Jacob Bergstedt; Vincent Rouilly; Valentina Libri; Alejandra Urrutia; Cécile Alanio; Petar Scepanovic; Christian Hammer; Friederike Jönsson; Benoît Beitz; Hélène Quach; Yoong Wearn Lim; Julie Hunkapiller; Magge Zepeda; Cherie Green; Barbara Piasecka; Claire Leloup; Lars Rogge; François Huetz; Isabelle Peguillet; Olivier Lantz; Magnus Fontes; James P Di Santo; Stéphanie Thomas; Jacques Fellay; Darragh Duffy; Lluís Quintana-Murci; Matthew L Albert
Journal:  Nat Immunol       Date:  2018-02-23       Impact factor: 25.606

6.  The genetic architecture of the human immune system: a bioresource for autoimmunity and disease pathogenesis.

Authors:  Mario Roederer; Lydia Quaye; Massimo Mangino; Margaret H Beddall; Yolanda Mahnke; Pratip Chattopadhyay; Isabella Tosi; Luca Napolitano; Manuela Terranova Barberio; Cristina Menni; Federica Villanova; Paola Di Meglio; Tim D Spector; Frank O Nestle
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

7.  Differential Effects of Environmental and Genetic Factors on T and B Cell Immune Traits.

Authors:  Raul Aguirre-Gamboa; Irma Joosten; Paulo C M Urbano; Renate G van der Molen; Esther van Rijssen; Bram van Cranenbroek; Marije Oosting; Sanne Smeekens; Martin Jaeger; Maria Zorro; Sebo Withoff; Antonius E van Herwaarden; Fred C G J Sweep; Romana T Netea; Morris A Swertz; Lude Franke; Ramnik J Xavier; Leo A B Joosten; Mihai G Netea; Cisca Wijmenga; Vinod Kumar; Yang Li; Hans J P M Koenen
Journal:  Cell Rep       Date:  2016-11-03       Impact factor: 9.423

8.  FINEMAP: efficient variable selection using summary data from genome-wide association studies.

Authors:  Christian Benner; Chris C A Spencer; Aki S Havulinna; Veikko Salomaa; Samuli Ripatti; Matti Pirinen
Journal:  Bioinformatics       Date:  2016-01-14       Impact factor: 6.937

9.  Genome sequencing elucidates Sardinian genetic architecture and augments association analyses for lipid and blood inflammatory markers.

Authors:  Carlo Sidore; Fabio Busonero; Andrea Maschio; Eleonora Porcu; Silvia Naitza; Magdalena Zoledziewska; Antonella Mulas; Giorgio Pistis; Maristella Steri; Fabrice Danjou; Alan Kwong; Vicente Diego Ortega Del Vecchyo; Charleston W K Chiang; Jennifer Bragg-Gresham; Maristella Pitzalis; Ramaiah Nagaraja; Brendan Tarrier; Christine Brennan; Sergio Uzzau; Christian Fuchsberger; Rossano Atzeni; Frederic Reinier; Riccardo Berutti; Jie Huang; Nicholas J Timpson; Daniela Toniolo; Paolo Gasparini; Giovanni Malerba; George Dedoussis; Eleftheria Zeggini; Nicole Soranzo; Chris Jones; Robert Lyons; Andrea Angius; Hyun M Kang; John Novembre; Serena Sanna; David Schlessinger; Francesco Cucca; Gonçalo R Abecasis
Journal:  Nat Genet       Date:  2015-09-14       Impact factor: 38.330

10.  Genetic Architecture of Adaptive Immune System Identifies Key Immune Regulators.

Authors:  Vasiliki Lagou; Josselyn E Garcia-Perez; Ide Smets; Lies Van Horebeek; Marijne Vandebergh; Liye Chen; Klara Mallants; Teresa Prezzemolo; Kelly Hilven; Stephanie Humblet-Baron; Matthieu Moisse; Philip Van Damme; Guy Boeckxstaens; Paul Bowness; Bénédicte Dubois; James Dooley; Adrian Liston; An Goris
Journal:  Cell Rep       Date:  2018-10-16       Impact factor: 9.423

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  22 in total

Review 1.  Human immune diversity: from evolution to modernity.

Authors:  Adrian Liston; Stephanie Humblet-Baron; Darragh Duffy; An Goris
Journal:  Nat Immunol       Date:  2021-11-18       Impact factor: 25.606

2.  Identification of aging-associated immunotypes and immune stability as indicators of post-vaccination immune activation.

Authors:  Alper Cevirgel; Sudarshan A Shetty; Martijn Vos; Nening M Nanlohy; Lisa Beckers; Elske Bijvank; Nynke Rots; Josine van Beek; Anne-Marie Buisman; Debbie van Baarle
Journal:  Aging Cell       Date:  2022-09-08       Impact factor: 11.005

3.  Multiple sclerosis genetic and non-genetic factors interact through the transient transcriptome.

Authors:  Renato Umeton; Gianmarco Bellucci; Rachele Bigi; Silvia Romano; Maria Chiara Buscarinu; Roberta Reniè; Virginia Rinaldi; Raffaella Pizzolato Umeton; Emanuele Morena; Carmela Romano; Rosella Mechelli; Marco Salvetti; Giovanni Ristori
Journal:  Sci Rep       Date:  2022-05-09       Impact factor: 4.996

4.  Deep immune phenotyping reveals similarities between aging, Down syndrome, and autoimmunity.

Authors:  Katharina Lambert; Keagan G Moo; Azlann Arnett; Gautam Goel; Alex Hu; Kaitlin J Flynn; Cate Speake; Alice E Wiedeman; Vivian H Gersuk; Peter S Linsley; Carla J Greenbaum; S Alice Long; Rebecca Partridge; Jane H Buckner; Bernard Khor
Journal:  Sci Transl Med       Date:  2022-01-12       Impact factor: 19.319

Review 5.  Harnessing big data to characterize immune-related adverse events.

Authors:  Ying Jing; Jingwen Yang; Douglas B Johnson; Javid J Moslehi; Leng Han
Journal:  Nat Rev Clin Oncol       Date:  2022-01-17       Impact factor: 65.011

6.  An interferon-inducible signature of airway disease from blood gene expression profiling.

Authors:  Jeong H Yun; Sool Lee; Pooja Srinivasa; Jarrett Morrow; Robert Chase; Aadbida Saferali; Zhonghui Xu; Michael Cho; Peter Castaldi; Craig P Hersh
Journal:  Eur Respir J       Date:  2022-05-19       Impact factor: 33.795

7.  Polygenic risk score and biochemical/environmental variables predict a low-risk profile of age-related macular degeneration in Sardinia.

Authors:  Rita Serra; Andrea Angius; Vincenzo Rallo; Antonio Pinna; Maristella Steri; Maria Grazia Piras; Michele Marongiu; Florence Coscas; Myriam Gorospe; David Schlessinger; Edoardo Fiorillo; Francesco Cucca
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2022-10-20       Impact factor: 3.535

8.  Natural resistance to worms exacerbates bovine tuberculosis severity independently of worm coinfection.

Authors:  Vanessa O Ezenwa; Sarah A Budischak; Peter Buss; Mauricio Seguel; Gordon Luikart; Anna E Jolles; Kaori Sakamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-19       Impact factor: 12.779

Review 9.  Autophagy-Lysosomal Pathway as Potential Therapeutic Target in Parkinson's Disease.

Authors:  Srinivasa Reddy Bonam; Christine Tranchant; Sylviane Muller
Journal:  Cells       Date:  2021-12-15       Impact factor: 6.600

10.  TCR repertoire diversity in Multiple Sclerosis: High-dimensional bioinformatics analysis of sequences from brain, cerebrospinal fluid and peripheral blood.

Authors:  Roberta Amoriello; Maria Chernigovskaya; Victor Greiff; Alberto Carnasciali; Luca Massacesi; Alessandro Barilaro; Anna M Repice; Tiziana Biagioli; Alessandra Aldinucci; Paolo A Muraro; David A Laplaud; Andreas Lossius; Clara Ballerini
Journal:  EBioMedicine       Date:  2021-06-11       Impact factor: 8.143

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