Literature DB >> 25772697

The genetic architecture of the human immune system: a bioresource for autoimmunity and disease pathogenesis.

Mario Roederer1, Lydia Quaye2, Massimo Mangino3, Margaret H Beddall4, Yolanda Mahnke4, Pratip Chattopadhyay4, Isabella Tosi5, Luca Napolitano6, Manuela Terranova Barberio6, Cristina Menni2, Federica Villanova5, Paola Di Meglio6, Tim D Spector7, Frank O Nestle5.   

Abstract

Despite recent discoveries of genetic variants associated with autoimmunity and infection, genetic control of the human immune system during homeostasis is poorly understood. We undertook a comprehensive immunophenotyping approach, analyzing 78,000 immune traits in 669 female twins. From the top 151 heritable traits (up to 96% heritable), we used replicated GWAS to obtain 297 SNP associations at 11 genetic loci, explaining up to 36% of the variation of 19 traits. We found multiple associations with canonical traits of all major immune cell subsets and uncovered insights into genetic control for regulatory T cells. This data set also revealed traits associated with loci known to confer autoimmune susceptibility, providing mechanistic hypotheses linking immune traits with the etiology of disease. Our data establish a bioresource that links genetic control elements associated with normal immune traits to common autoimmune and infectious diseases, providing a shortcut to identifying potential mechanisms of immune-related diseases.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25772697      PMCID: PMC4393780          DOI: 10.1016/j.cell.2015.02.046

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  39 in total

1.  OMIP-019: quantification of human γδT-cells, iNKT-cells, and hematopoietic precursors.

Authors:  Yolanda D Mahnke; Margaret H Beddall; Mario Roederer
Journal:  Cytometry A       Date:  2013-08       Impact factor: 4.355

2.  Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.

Authors:  Towfique Raj; Katie Rothamel; Sara Mostafavi; Chun Ye; Mark N Lee; Joseph M Replogle; Ting Feng; Michelle Lee; Natasha Asinovski; Irene Frohlich; Selina Imboywa; Alina Von Korff; Yukinori Okada; Nikolaos A Patsopoulos; Scott Davis; Cristin McCabe; Hyun-il Paik; Gyan P Srivastava; Soumya Raychaudhuri; David A Hafler; Daphne Koller; Aviv Regev; Nir Hacohen; Diane Mathis; Christophe Benoist; Barbara E Stranger; Philip L De Jager
Journal:  Science       Date:  2014-05-02       Impact factor: 47.728

3.  Genetic variants regulating immune cell levels in health and disease.

Authors:  Valeria Orrù; Maristella Steri; Gabriella Sole; Carlo Sidore; Francesca Virdis; Mariano Dei; Sandra Lai; Magdalena Zoledziewska; Fabio Busonero; Antonella Mulas; Matteo Floris; Wieslawa I Mentzen; Silvana A M Urru; Stefania Olla; Michele Marongiu; Maria G Piras; Monia Lobina; Andrea Maschio; Maristella Pitzalis; Maria F Urru; Marco Marcelli; Roberto Cusano; Francesca Deidda; Valentina Serra; Manuela Oppo; Rosella Pilu; Frederic Reinier; Riccardo Berutti; Luca Pireddu; Ilenia Zara; Eleonora Porcu; Alan Kwong; Christine Brennan; Brendan Tarrier; Robert Lyons; Hyun M Kang; Sergio Uzzau; Rossano Atzeni; Maria Valentini; Davide Firinu; Lidia Leoni; Gianluca Rotta; Silvia Naitza; Andrea Angius; Mauro Congia; Michael B Whalen; Chris M Jones; David Schlessinger; Gonçalo R Abecasis; Edoardo Fiorillo; Serena Sanna; Francesco Cucca
Journal:  Cell       Date:  2013-09-26       Impact factor: 41.582

Review 4.  FOXP3+ regulatory T cells in the human immune system.

Authors:  Shimon Sakaguchi; Makoto Miyara; Cristina M Costantino; David A Hafler
Journal:  Nat Rev Immunol       Date:  2010-06-18       Impact factor: 53.106

5.  OMIP-017: human CD4(+) helper T-cell subsets including follicular helper cells.

Authors:  Yolanda D Mahnke; Margaret H Beddall; Mario Roederer
Journal:  Cytometry A       Date:  2013-02-28       Impact factor: 4.355

6.  Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.

Authors:  Manuel A R Ferreira; Massimo Mangino; Chanson J Brumme; Zhen Zhen Zhao; Sarah E Medland; Margaret J Wright; Dale R Nyholt; Scott Gordon; Megan Campbell; Brian P McEvoy; Anjali Henders; David M Evans; Jerry S Lanchbury; Florencia Pereyra; Bruce D Walker; David W Haas; Nicole Soranzo; Tim D Spector; Paul I W de Bakker; Ian H Frazer; Grant W Montgomery; Nicholas G Martin
Journal:  Am J Hum Genet       Date:  2009-12-31       Impact factor: 11.025

7.  Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.

Authors:  Anne Hinks; Joanna Cobb; Miranda C Marion; Sampath Prahalad; Marc Sudman; John Bowes; Paul Martin; Mary E Comeau; Satria Sajuthi; Robert Andrews; Milton Brown; Wei-Min Chen; Patrick Concannon; Panos Deloukas; Sarah Edkins; Stephen Eyre; Patrick M Gaffney; Stephen L Guthery; Joel M Guthridge; Sarah E Hunt; Judith A James; Mehdi Keddache; Kathy L Moser; Peter A Nigrovic; Suna Onengut-Gumuscu; Mitchell L Onslow; Carlos D Rosé; Stephen S Rich; Kathryn J A Steel; Edward K Wakeland; Carol A Wallace; Lucy R Wedderburn; Patricia Woo; John F Bohnsack; Johannes Peter Haas; David N Glass; Carl D Langefeld; Wendy Thomson; Susan D Thompson
Journal:  Nat Genet       Date:  2013-04-21       Impact factor: 38.330

8.  A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.

Authors:  Bryan N Howie; Peter Donnelly; Jonathan Marchini
Journal:  PLoS Genet       Date:  2009-06-19       Impact factor: 5.917

9.  Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.

Authors:  Nicole Soranzo; Fernando Rivadeneira; Usha Chinappen-Horsley; Ida Malkina; J Brent Richards; Naomi Hammond; Lisette Stolk; Alexandra Nica; Michael Inouye; Albert Hofman; Jonathan Stephens; Eleanor Wheeler; Pascal Arp; Rhian Gwilliam; P Mila Jhamai; Simon Potter; Amy Chaney; Mohammed J R Ghori; Radhi Ravindrarajah; Sergey Ermakov; Karol Estrada; Huibert A P Pols; Frances M Williams; Wendy L McArdle; Joyce B van Meurs; Ruth J F Loos; Emmanouil T Dermitzakis; Kourosh R Ahmadi; Deborah J Hart; Willem H Ouwehand; Nicholas J Wareham; Inês Barroso; Manjinder S Sandhu; David P Strachan; Gregory Livshits; Timothy D Spector; André G Uitterlinden; Panos Deloukas
Journal:  PLoS Genet       Date:  2009-04-03       Impact factor: 5.917

10.  Cutting edge: Expression of FcγRIIB tempers memory CD8 T cell function in vivo.

Authors:  Gabriel R Starbeck-Miller; Vladimir P Badovinac; Daniel L Barber; John T Harty
Journal:  J Immunol       Date:  2013-11-27       Impact factor: 5.422

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  128 in total

1.  The heritable immune system.

Authors:  Judy Cho
Journal:  Nat Biotechnol       Date:  2015-06       Impact factor: 54.908

2.  Disease variants alter transcription factor levels and methylation of their binding sites.

Authors:  Marc Jan Bonder; René Luijk; Daria V Zhernakova; Matthijs Moed; Patrick Deelen; Martijn Vermaat; Maarten van Iterson; Freerk van Dijk; Michiel van Galen; Jan Bot; Roderick C Slieker; P Mila Jhamai; Michael Verbiest; H Eka D Suchiman; Marijn Verkerk; Ruud van der Breggen; Jeroen van Rooij; Nico Lakenberg; Wibowo Arindrarto; Szymon M Kielbasa; Iris Jonkers; Peter van 't Hof; Irene Nooren; Marian Beekman; Joris Deelen; Diana van Heemst; Alexandra Zhernakova; Ettje F Tigchelaar; Morris A Swertz; Albert Hofman; André G Uitterlinden; René Pool; Jenny van Dongen; Jouke J Hottenga; Coen D A Stehouwer; Carla J H van der Kallen; Casper G Schalkwijk; Leonard H van den Berg; Erik W van Zwet; Hailiang Mei; Yang Li; Mathieu Lemire; Thomas J Hudson; P Eline Slagboom; Cisca Wijmenga; Jan H Veldink; Marleen M J van Greevenbroek; Cornelia M van Duijn; Dorret I Boomsma; Aaron Isaacs; Rick Jansen; Joyce B J van Meurs; Peter A C 't Hoen; Lude Franke; Bastiaan T Heijmans
Journal:  Nat Genet       Date:  2016-12-05       Impact factor: 38.330

Review 3.  What rheumatologists need to know about CRISPR/Cas9.

Authors:  Gary J Gibson; Maozhou Yang
Journal:  Nat Rev Rheumatol       Date:  2017-02-09       Impact factor: 20.543

Review 4.  Genetic-Driven Druggable Target Identification and Validation.

Authors:  Matteo Floris; Stefania Olla; David Schlessinger; Francesco Cucca
Journal:  Trends Genet       Date:  2018-05-23       Impact factor: 11.639

5.  Germline Features Associated with Immune Infiltration in Solid Tumors.

Authors:  Sahar Shahamatdar; Meng Xiao He; Matthew A Reyna; Alexander Gusev; Saud H AlDubayan; Eliezer M Van Allen; Sohini Ramachandran
Journal:  Cell Rep       Date:  2020-03-03       Impact factor: 9.423

Review 6.  T memory stem cells in health and disease.

Authors:  Luca Gattinoni; Daniel E Speiser; Mathias Lichterfeld; Chiara Bonini
Journal:  Nat Med       Date:  2017-01-06       Impact factor: 53.440

7.  An Atlas of Genetic Variation Linking Pathogen-Induced Cellular Traits to Human Disease.

Authors:  Liuyang Wang; Kelly J Pittman; Jeffrey R Barker; Raul E Salinas; Ian B Stanaway; Graham D Williams; Robert J Carroll; Tom Balmat; Andy Ingham; Anusha M Gopalakrishnan; Kyle D Gibbs; Alejandro L Antonia; Joseph Heitman; Soo Chan Lee; Gail P Jarvik; Joshua C Denny; Stacy M Horner; Mark R DeLong; Raphael H Valdivia; David R Crosslin; Dennis C Ko
Journal:  Cell Host Microbe       Date:  2018-08-08       Impact factor: 21.023

8.  Decreased Immunoglobulin G Core Fucosylation, A Player in Antibody-dependent Cell-mediated Cytotoxicity, is Associated with Autoimmune Thyroid Diseases.

Authors:  Tiphaine C Martin; Mirna Šimurina; Marta Ząbczyńska; Marina Martinic Kavur; Magdalena Rydlewska; Marija Pezer; Kamila Kozłowska; Andrea Burri; Marija Vilaj; Renata Turek-Jabrocka; Milena Krnjajić-Tadijanović; Małgorzata Trofimiuk-Müldner; Ivo Ugrina; Anna Lityńska; Alicja Hubalewska-Dydejczyk; Irena Trbojevic-Akmacic; Ee Mun Lim; John P Walsh; Ewa Pocheć; Tim D Spector; Scott G Wilson; Gordan Lauc
Journal:  Mol Cell Proteomics       Date:  2020-02-05       Impact factor: 5.911

9.  Immune system development varies according to age, location, and anemia in African children.

Authors:  Danika L Hill; Edward J Carr; Tobias Rutishauser; Gemma Moncunill; Joseph J Campo; Silvia Innocentin; Maxmillian Mpina; Augusto Nhabomba; Anneth Tumbo; Chenjerai Jairoce; Henriëtte A Moll; Menno C van Zelm; Carlota Dobaño; Claudia Daubenberger; Michelle A Linterman
Journal:  Sci Transl Med       Date:  2020-02-05       Impact factor: 17.956

Review 10.  Immunopathology of multiple sclerosis.

Authors:  Calliope A Dendrou; Lars Fugger; Manuel A Friese
Journal:  Nat Rev Immunol       Date:  2015-08-07       Impact factor: 53.106

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