Literature DB >> 32905923

Radiomics analysis using stability selection supervised component analysis for right-censored survival data.

Kang K Yan1, Xiaofei Wang2, Wendy W T Lam3, Varut Vardhanabhuti4, Anne W M Lee5, Herbert H Pang6.   

Abstract

Radiomics is a newly emerging field that involves the extraction of massive quantitative features from biomedical images by using data-characterization algorithms. Distinctive imaging features identified from biomedical images can be used for prognosis and therapeutic response prediction, and they can provide a noninvasive approach for personalized therapy. So far, many of the published radiomics studies utilize existing out of the box algorithms to identify the prognostic markers from biomedical images that are not specific to radiomics data. To better utilize biomedical images, we propose a novel machine learning approach, stability selection supervised principal component analysis (SSSuperPCA) that identifies stable features from radiomics big data coupled with dimension reduction for right-censored survival outcomes. The proposed approach allows us to identify a set of stable features that are highly associated with the survival outcomes in a simple yet meaningful manner, while controlling the per-family error rate. We evaluate the performance of SSSuperPCA using simulations and real data sets for non-small cell lung cancer and head and neck cancer, and compare it with other machine learning algorithms. The results demonstrate that our method has a competitive edge over other existing methods in identifying the prognostic markers from biomedical imaging data for the prediction of right-censored survival outcomes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Data mining; Dimensionality reduction; Machine learning; Radiomics

Mesh:

Year:  2020        PMID: 32905923      PMCID: PMC7501167          DOI: 10.1016/j.compbiomed.2020.103959

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  21 in total

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Journal:  Comput Biol Med       Date:  2019-09-05       Impact factor: 4.589

Review 4.  Technical Challenges in the Clinical Application of Radiomics.

Authors:  Faiq A Shaikh; Brian J Kolowitz; Omer Awan; Hugo J Aerts; Anna von Reden; Safwan Halabi; Sohaib A Mohiuddin; Sana Malik; Rasu B Shrestha; Christopher Deible
Journal:  JCO Clin Cancer Inform       Date:  2017-11

5.  Large-scale Radiomic Profiling of Recurrent Glioblastoma Identifies an Imaging Predictor for Stratifying Anti-Angiogenic Treatment Response.

Authors:  Philipp Kickingereder; Michael Götz; John Muschelli; Antje Wick; Ulf Neuberger; Russell T Shinohara; Martin Sill; Martha Nowosielski; Heinz-Peter Schlemmer; Alexander Radbruch; Wolfgang Wick; Martin Bendszus; Klaus H Maier-Hein; David Bonekamp
Journal:  Clin Cancer Res       Date:  2016-10-10       Impact factor: 12.531

6.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

7.  Radiomics Signature: A Potential Biomarker for the Prediction of Disease-Free Survival in Early-Stage (I or II) Non-Small Cell Lung Cancer.

Authors:  Yanqi Huang; Zaiyi Liu; Lan He; Xin Chen; Dan Pan; Zelan Ma; Cuishan Liang; Jie Tian; Changhong Liang
Journal:  Radiology       Date:  2016-06-27       Impact factor: 11.105

8.  Machine learning based brain tumour segmentation on limited data using local texture and abnormality.

Authors:  Stijn Bonte; Ingeborg Goethals; Roel Van Holen
Journal:  Comput Biol Med       Date:  2018-05-07       Impact factor: 4.589

9.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

10.  Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selection.

Authors:  Andreas Mayr; Benjamin Hofner; Matthias Schmid
Journal:  BMC Bioinformatics       Date:  2016-07-22       Impact factor: 3.169

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  1 in total

1.  Feature Sequencing Method of Industrial Control Data Set Based on Multidimensional Evaluation Parameters.

Authors:  Xue-Jun Liu; Xiang-Min Kong; Xiao-Ni Zhang; Hai-Ying Luan; Yong Yan; Yun Sha; Kai-Li Li; Xue-Ying Cao; Jian-Ping Chen
Journal:  Comput Intell Neurosci       Date:  2022-04-28
  1 in total

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