Literature DB >> 32895523

Meta-DNA structures.

Guangbao Yao1,2, Fei Zhang2,3, Fei Wang1,4, Tianhuan Peng5, Hao Liu2, Erik Poppleton2, Petr Šulc2, Shuoxing Jiang2, Lan Liu2, Chen Gong2, Xinxin Jing1, Xiaoguo Liu1, Lihua Wang6,7, Yan Liu2, Chunhai Fan8,9, Hao Yan10.   

Abstract

DNA origami has emerged as a highly programmable method to construct customized objects and functional devices in the 10-100 nm scale. Scaling up the size of the DNA origami would enable many potential applications, which include metamaterial construction and surface-based biophysical assays. Here we demonstrate that a six-helix bundle DNA origami nanostructure in the submicrometre scale (meta-DNA) could be used as a magnified analogue of single-stranded DNA, and that two meta-DNAs that contain complementary 'meta-base pairs' can form double helices with programmed handedness and helical pitches. By mimicking the molecular behaviours of DNA strands and their assembly strategies, we used meta-DNA building blocks to form diverse and complex structures on the micrometre scale. Using meta-DNA building blocks, we constructed a series of DNA architectures on a submicrometre-to-micrometre scale, which include meta-multi-arm junctions, three-dimensional (3D) polyhedrons, and various 2D/3D lattices. We also demonstrated a hierarchical strand-displacement reaction on meta-DNA to transfer the dynamic features of DNA into the meta-DNA. This meta-DNA self-assembly concept may transform the microscopic world of structural DNA nanotechnology.

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Year:  2020        PMID: 32895523     DOI: 10.1038/s41557-020-0539-8

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  39 in total

1.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

2.  A logic-gated nanorobot for targeted transport of molecular payloads.

Authors:  Shawn M Douglas; Ido Bachelet; George M Church
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

3.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 4.  Challenges and opportunities for structural DNA nanotechnology.

Authors:  Andre V Pinheiro; Dongran Han; William M Shih; Hao Yan
Journal:  Nat Nanotechnol       Date:  2011-11-06       Impact factor: 39.213

5.  A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo.

Authors:  Suping Li; Qiao Jiang; Shaoli Liu; Yinlong Zhang; Yanhua Tian; Chen Song; Jing Wang; Yiguo Zou; Gregory J Anderson; Jing-Yan Han; Yung Chang; Yan Liu; Chen Zhang; Liang Chen; Guangbiao Zhou; Guangjun Nie; Hao Yan; Baoquan Ding; Yuliang Zhao
Journal:  Nat Biotechnol       Date:  2018-02-12       Impact factor: 54.908

6.  Nucleic acid junctions and lattices.

Authors:  N C Seeman
Journal:  J Theor Biol       Date:  1982-11-21       Impact factor: 2.691

7.  Organizing DNA origami tiles into larger structures using preformed scaffold frames.

Authors:  Zhao Zhao; Yan Liu; Hao Yan
Journal:  Nano Lett       Date:  2011-06-23       Impact factor: 11.189

8.  Toward larger DNA origami.

Authors:  Alexandria N Marchi; Ishtiaq Saaem; Briana N Vogen; Stanley Brown; Thomas H LaBean
Journal:  Nano Lett       Date:  2014-09-08       Impact factor: 11.189

9.  Casting inorganic structures with DNA molds.

Authors:  Wei Sun; Etienne Boulais; Yera Hakobyan; Wei Li Wang; Amy Guan; Mark Bathe; Peng Yin
Journal:  Science       Date:  2014-10-09       Impact factor: 47.728

10.  Complex silica composite nanomaterials templated with DNA origami.

Authors:  Xiaoguo Liu; Fei Zhang; Xinxin Jing; Muchen Pan; Pi Liu; Wei Li; Bowen Zhu; Jiang Li; Hong Chen; Lihua Wang; Jianping Lin; Yan Liu; Dongyuan Zhao; Hao Yan; Chunhai Fan
Journal:  Nature       Date:  2018-07-16       Impact factor: 49.962

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  11 in total

1.  OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures.

Authors:  Erik Poppleton; Roger Romero; Aatmik Mallya; Lorenzo Rovigatti; Petr Šulc
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

2.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

3.  Dimerization and oligomerization of DNA-assembled building blocks for controlled multi-motion in high-order architectures.

Authors:  Ling Xin; Xiaoyang Duan; Na Liu
Journal:  Nat Commun       Date:  2021-05-28       Impact factor: 14.919

Review 4.  Chiral Systems Made from DNA.

Authors:  David Winogradoff; Pin-Yi Li; Himanshu Joshi; Lauren Quednau; Christopher Maffeo; Aleksei Aksimentiev
Journal:  Adv Sci (Weinh)       Date:  2021-01-21       Impact factor: 16.806

5.  Nanobase.org: a repository for DNA and RNA nanostructures.

Authors:  Erik Poppleton; Aatmik Mallya; Swarup Dey; Joel Joseph; Petr Šulc
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

Review 6.  Chemically modified DNA nanostructures for drug delivery.

Authors:  Yuang Wang; Xuehe Lu; Xiaohui Wu; Yan Li; Wantao Tang; Changping Yang; Jianbing Liu; Baoquan Ding
Journal:  Innovation (Camb)       Date:  2022-02-10

7.  Extracellular DNA: A Missing Link in the Pathogenesis of Ectopic Mineralization.

Authors:  Min-Juan Shen; Kai Jiao; Chen-Yu Wang; Hermann Ehrlich; Mei-Chen Wan; Dong-Xiao Hao; Jing Li; Qian-Qian Wan; Lige Tonggu; Jian-Fei Yan; Kai-Yan Wang; Yu-Xuan Ma; Ji-Hua Chen; Franklin R Tay; Li-Na Niu
Journal:  Adv Sci (Weinh)       Date:  2021-12-23       Impact factor: 16.806

8.  Pairing nanoarchitectonics of oligodeoxyribonucleotides with complex diversity: concatemers and self-limited complexes.

Authors:  Anastasia A Zamoskovtseva; Victor M Golyshev; Valeria A Kizilova; Georgiy Yu Shevelev; Dmitrii V Pyshnyi; Alexander A Lomzov
Journal:  RSC Adv       Date:  2022-02-23       Impact factor: 3.361

Review 9.  Engineering DNA quadruplexes in DNA nanostructures for biosensor construction.

Authors:  Jingxin Liu; Li Yan; Shiliang He; Junqing Hu
Journal:  Nano Res       Date:  2021-12-04       Impact factor: 8.897

10.  A localized DNA finite-state machine with temporal resolution.

Authors:  Lan Liu; Fan Hong; Hao Liu; Xu Zhou; Shuoxing Jiang; Petr Šulc; Jian-Hui Jiang; Hao Yan
Journal:  Sci Adv       Date:  2022-03-25       Impact factor: 14.136

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