Literature DB >> 32873929

The nucleolus as a multiphase liquid condensate.

Denis L J Lafontaine1, Joshua A Riback2, Rümeyza Bascetin3, Clifford P Brangwynne4,5.   

Abstract

The nucleolus is the most prominent nuclear body and serves a fundamentally important biological role as a site of ribonucleoprotein particle assembly, primarily dedicated to ribosome biogenesis. Despite being one of the first intracellular structures visualized historically, the biophysical rules governing its assembly and function are only starting to become clear. Recent studies have provided increasing support for the concept that the nucleolus represents a multilayered biomolecular condensate, whose formation by liquid-liquid phase separation (LLPS) facilitates the initial steps of ribosome biogenesis and other functions. Here, we review these biophysical insights in the context of the molecular and cell biology of the nucleolus. We discuss how nucleolar function is linked to its organization as a multiphase condensate and how dysregulation of this organization could provide insights into still poorly understood aspects of nucleolus-associated diseases, including cancer, ribosomopathies and neurodegeneration as well as ageing. We suggest that the LLPS model provides the starting point for a unifying quantitative framework for the assembly, structural maintenance and function of the nucleolus, with implications for gene regulation and ribonucleoprotein particle assembly throughout the nucleus. The LLPS concept is also likely useful in designing new therapeutic strategies to target nucleolar dysfunction.

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Year:  2020        PMID: 32873929     DOI: 10.1038/s41580-020-0272-6

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  105 in total

1.  Directed proteomic analysis of the human nucleolus.

Authors:  Jens S Andersen; Carol E Lyon; Archa H Fox; Anthony K L Leung; Yun Wah Lam; Hanno Steen; Matthias Mann; Angus I Lamond
Journal:  Curr Biol       Date:  2002-01-08       Impact factor: 10.834

2.  Functional proteomic analysis of human nucleolus.

Authors:  Alexander Scherl; Yohann Couté; Catherine Déon; Aleth Callé; Karine Kindbeiter; Jean-Charles Sanchez; Anna Greco; Denis Hochstrasser; Jean-Jacques Diaz
Journal:  Mol Biol Cell       Date:  2002-11       Impact factor: 4.138

Review 3.  The multifunctional nucleolus.

Authors:  François-Michel Boisvert; Silvana van Koningsbruggen; Joaquín Navascués; Angus I Lamond
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

Review 4.  The plurifunctional nucleolus.

Authors:  T Pederson
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

Review 5.  Noncoding RNAs in eukaryotic ribosome biogenesis and function.

Authors:  Denis L J Lafontaine
Journal:  Nat Struct Mol Biol       Date:  2015-01       Impact factor: 15.369

Review 6.  Nucleolus: A Central Hub for Nuclear Functions.

Authors:  Olga V Iarovaia; Elizaveta P Minina; Eugene V Sheval; Daria Onichtchouk; Svetlana Dokudovskaya; Sergey V Razin; Yegor S Vassetzky
Journal:  Trends Cell Biol       Date:  2019-06-05       Impact factor: 20.808

Review 7.  Ribosomal biogenesis as an emerging target of neurodevelopmental pathologies.

Authors:  Michal Hetman; Lukasz P Slomnicki
Journal:  J Neurochem       Date:  2018-11-12       Impact factor: 5.372

Review 8.  The nucleolus under stress.

Authors:  Séverine Boulon; Belinda J Westman; Saskia Hutten; François-Michel Boisvert; Angus I Lamond
Journal:  Mol Cell       Date:  2010-10-22       Impact factor: 17.970

9.  A decade of Cdc14--a personal perspective. Delivered on 9 July 2007 at the 32nd FEBS Congress in Vienna, Austria.

Authors:  Angelika Amon
Journal:  FEBS J       Date:  2008-12       Impact factor: 5.542

10.  Viruses and the nucleolus: the fatal attraction.

Authors:  Anna Salvetti; Anna Greco
Journal:  Biochim Biophys Acta       Date:  2013-12-27
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  89 in total

Review 1.  Nuclear compartmentalization as a mechanism of quantitative control of gene expression.

Authors:  Prashant Bhat; Drew Honson; Mitchell Guttman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-08-02       Impact factor: 94.444

Review 2.  Liquid-liquid phase separation as an organizing principle of intracellular space: overview of the evolution of the cell compartmentalization concept.

Authors:  Iuliia A Antifeeva; Alexander V Fonin; Anna S Fefilova; Olesya V Stepanenko; Olga I Povarova; Sergey A Silonov; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Cell Mol Life Sci       Date:  2022-04-20       Impact factor: 9.261

3.  Evolved interactions stabilize many coexisting phases in multicomponent liquids.

Authors:  David Zwicker; Liedewij Laan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

Review 4.  Transcriptional enhancers at 40: evolution of a viral DNA element to nuclear architectural structures.

Authors:  Sreejith J Nair; Tom Suter; Susan Wang; Lu Yang; Feng Yang; Michael G Rosenfeld
Journal:  Trends Genet       Date:  2022-07-07       Impact factor: 11.821

Review 5.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

6.  Mechanistic dissection of increased enzymatic rate in a phase-separated compartment.

Authors:  William Peeples; Michael K Rosen
Journal:  Nat Chem Biol       Date:  2021-05-25       Impact factor: 15.040

7.  Some viruses need to phase-separate to replicate.

Authors:  Christopher H Lee; Terence S Dermody
Journal:  EMBO J       Date:  2021-09-27       Impact factor: 11.598

Review 8.  Commuting to Work: Nucleolar Long Non-Coding RNA Control Ribosome Biogenesis from Near and Far.

Authors:  Victoria Mamontova; Barbara Trifault; Lea Boten; Kaspar Burger
Journal:  Noncoding RNA       Date:  2021-07-14

Review 9.  Polyphasic linkage and the impact of ligand binding on the regulation of biomolecular condensates.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Biophys Rev       Date:  2021-06-15

10.  Controlling biomolecular condensates via chemical reactions.

Authors:  Jan Kirschbaum; David Zwicker
Journal:  J R Soc Interface       Date:  2021-06-30       Impact factor: 4.118

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