Literature DB >> 35867744

Evolved interactions stabilize many coexisting phases in multicomponent liquids.

David Zwicker1, Liedewij Laan2.   

Abstract

Phase separation has emerged as an essential concept for the spatial organization inside biological cells. However, despite the clear relevance to virtually all physiological functions, we understand surprisingly little about what phases form in a system of many interacting components, like in cells. Here we introduce a numerical method based on physical relaxation dynamics to study the coexisting phases in such systems. We use our approach to optimize interactions between components, similar to how evolution might have optimized the interactions of proteins. These evolved interactions robustly lead to a defined number of phases, despite substantial uncertainties in the initial composition, while random or designed interactions perform much worse. Moreover, the optimized interactions are robust to perturbations, and they allow fast adaption to new target phase counts. We thus show that genetically encoded interactions of proteins provide versatile control of phase behavior. The phases forming in our system are also a concrete example of a robust emergent property that does not rely on fine-tuning the parameters of individual constituents.

Entities:  

Keywords:  biomolecular condensates; droplets; optimization; statistical physics

Mesh:

Substances:

Year:  2022        PMID: 35867744      PMCID: PMC9282444          DOI: 10.1073/pnas.2201250119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  51 in total

1.  Phase behavior and morphology of multicomponent liquid mixtures.

Authors:  Sheng Mao; Derek Kuldinow; Mikko P Haataja; Andrej Košmrlj
Journal:  Soft Matter       Date:  2019-02-06       Impact factor: 3.679

Review 2.  Formation and function of bacterial organelles.

Authors:  Chris Greening; Trevor Lithgow
Journal:  Nat Rev Microbiol       Date:  2020-07-24       Impact factor: 60.633

Review 3.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

4.  Membraneless organelles formed by liquid-liquid phase separation increase bacterial fitness.

Authors:  Xin Jin; Ji-Eun Lee; Charley Schaefer; Xinwei Luo; Adam J M Wollman; Alex L Payne-Dwyer; Tian Tian; Xiaowei Zhang; Xiao Chen; Yingxing Li; Tom C B McLeish; Mark C Leake; Fan Bai
Journal:  Sci Adv       Date:  2021-10-20       Impact factor: 14.136

Review 5.  Probing and engineering liquid-phase organelles.

Authors:  Dan Bracha; Mackenzie T Walls; Clifford P Brangwynne
Journal:  Nat Biotechnol       Date:  2019-12-02       Impact factor: 54.908

6.  Physical theory of biological noise buffering by multicomponent phase separation.

Authors:  Dan Deviri; Samuel A Safran
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

7.  Phase separation in fluids with many interacting components.

Authors:  Krishna Shrinivas; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-09       Impact factor: 11.205

8.  Widespread occurrence of the droplet state of proteins in the human proteome.

Authors:  Maarten Hardenberg; Attila Horvath; Viktor Ambrus; Monika Fuxreiter; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

9.  Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains.

Authors:  Anne Bremer; Mina Farag; Wade M Borcherds; Ivan Peran; Erik W Martin; Rohit V Pappu; Tanja Mittag
Journal:  Nat Chem       Date:  2021-12-20       Impact factor: 24.274

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.