Literature DB >> 25565028

Noncoding RNAs in eukaryotic ribosome biogenesis and function.

Denis L J Lafontaine1.   

Abstract

The ribosome, central to protein synthesis in all cells, is a complex multicomponent assembly with rRNA at its functional core. During the process of ribosome biogenesis, diverse noncoding RNAs participate in controlling the quantity and quality of this rRNA. In this Review, I discuss the multiple roles assumed by noncoding RNAs during the different steps of ribosome biogenesis and how they contribute to the generation of ribosome heterogeneity, which affects normal and pathophysiological processes.

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Year:  2015        PMID: 25565028     DOI: 10.1038/nsmb.2939

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  93 in total

1.  Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.

Authors:  Timothy E Audas; Mathieu D Jacob; Stephen Lee
Journal:  Mol Cell       Date:  2012-01-27       Impact factor: 17.970

Review 2.  Specialized ribosomes: a new frontier in gene regulation and organismal biology.

Authors:  Shifeng Xue; Maria Barna
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-23       Impact factor: 94.444

3.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

4.  The box H/ACA RNP assembly factor Naf1p contains a domain homologous to Gar1p mediating its interaction with Cbf5p.

Authors:  Nicolas Leulliot; Katherine S Godin; Coralie Hoareau-Aveilla; Sophie Quevillon-Cheruel; Gabriele Varani; Yves Henry; Herman Van Tilbeurgh
Journal:  J Mol Biol       Date:  2007-06-16       Impact factor: 5.469

5.  The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.

Authors:  Lionel Tafforeau; Christiane Zorbas; Jean-Louis Langhendries; Sahra-Taylor Mullineux; Vassiliki Stamatopoulou; Romain Mullier; Ludivine Wacheul; Denis L J Lafontaine
Journal:  Mol Cell       Date:  2013-08-22       Impact factor: 17.970

6.  Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer.

Authors:  Jipei Liao; Lei Yu; Yuping Mei; Maria Guarnera; Jun Shen; Ruiyun Li; Zhenqiu Liu; Feng Jiang
Journal:  Mol Cancer       Date:  2010-07-27       Impact factor: 27.401

7.  Identification of human miRNA precursors that resemble box C/D snoRNAs.

Authors:  Motoharu Ono; Michelle S Scott; Kayo Yamada; Fabio Avolio; Geoffrey J Barton; Angus I Lamond
Journal:  Nucleic Acids Res       Date:  2011-01-18       Impact factor: 16.971

8.  Persistent upregulation of U6:SNORD44 small RNA ratio in the serum of breast cancer patients.

Authors:  Hitesh N Appaiah; Chirayu P Goswami; Lida A Mina; Sunil Badve; George W Sledge; Yunlong Liu; Harikrishna Nakshatri
Journal:  Breast Cancer Res       Date:  2011-09-13       Impact factor: 6.466

9.  Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification.

Authors:  Peter Tessarz; Helena Santos-Rosa; Sam C Robson; Kathrine B Sylvestersen; Christopher J Nelson; Michael L Nielsen; Tony Kouzarides
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

10.  Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA.

Authors:  Marlene Oeffinger; Daniel Zenklusen; Angelica Ferguson; Karen E Wei; Aziz El Hage; David Tollervey; Brian T Chait; Robert H Singer; Michael P Rout
Journal:  Mol Cell       Date:  2009-12-11       Impact factor: 17.970

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  117 in total

Review 1.  Pathways to Specialized Ribosomes: The Brussels Lecture.

Authors:  Jonathan D Dinman
Journal:  J Mol Biol       Date:  2016-01-04       Impact factor: 5.469

2.  Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.

Authors:  Denise Palm; Deniz Streit; Thiruvenkadam Shanmugam; Benjamin L Weis; Maike Ruprecht; Stefan Simm; Enrico Schleiff
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

3.  Controlling the material properties and rRNA processing function of the nucleolus using light.

Authors:  Lian Zhu; Tiffany M Richardson; Ludivine Wacheul; Ming-Tzo Wei; Marina Feric; Gena Whitney; Denis L J Lafontaine; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-09       Impact factor: 11.205

Review 4.  A new layer of rRNA regulation by small interference RNAs and the nuclear RNAi pathway.

Authors:  Xufei Zhou; Xiangyang Chen; Yun Wang; Xuezhu Feng; Shouhong Guang
Journal:  RNA Biol       Date:  2017-07-21       Impact factor: 4.652

5.  Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.

Authors:  Pan Zhu; Yuqiu Wang; Nanxun Qin; Feng Wang; Jia Wang; Xing Wang Deng; Danmeng Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-05       Impact factor: 11.205

Review 6.  Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Authors:  Salini Konikkat; John L Woolford
Journal:  Biochem J       Date:  2017-01-15       Impact factor: 3.857

Review 7.  Beyond mRNA: The role of non-coding RNAs in normal and aberrant hematopoiesis.

Authors:  Mark C Wilkes; Claire E Repellin; Kathleen M Sakamoto
Journal:  Mol Genet Metab       Date:  2017-07-25       Impact factor: 4.797

8.  Human PDCD2L Is an Export Substrate of CRM1 That Associates with 40S Ribosomal Subunit Precursors.

Authors:  Anne-Marie Landry-Voyer; Sarah Bilodeau; Danny Bergeron; Kiersten L Dionne; Sarah A Port; Caroline Rouleau; François-Michel Boisvert; Ralph H Kehlenbach; François Bachand
Journal:  Mol Cell Biol       Date:  2016-11-28       Impact factor: 4.272

Review 9.  Non-coding RNAs and disease: the classical ncRNAs make a comeback.

Authors:  Rogerio Alves de Almeida; Marcin G Fraczek; Steven Parker; Daniela Delneri; Raymond T O'Keefe
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

10.  Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Authors:  Olga Rodríguez-Galán; Juan J García-Gómez; Dieter Kressler; Jesús de la Cruz
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

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