Literature DB >> 35445278

Liquid-liquid phase separation as an organizing principle of intracellular space: overview of the evolution of the cell compartmentalization concept.

Iuliia A Antifeeva1, Alexander V Fonin1, Anna S Fefilova1, Olesya V Stepanenko1, Olga I Povarova1, Sergey A Silonov1, Irina M Kuznetsova1, Vladimir N Uversky2, Konstantin K Turoverov3.   

Abstract

At the turn of the twenty-first century, fundamental changes took place in the understanding of the structure and function of proteins and then in the appreciation of the intracellular space organization. A rather mechanistic model of the organization of living matter, where the function of proteins is determined by their rigid globular structure, and the intracellular processes occur in rigidly determined compartments, was replaced by an idea that highly dynamic and multifunctional "soft matter" lies at the heart of all living things. According this "new view", the most important role in the spatio-temporal organization of the intracellular space is played by liquid-liquid phase transitions of biopolymers. These self-organizing cellular compartments are open dynamic systems existing at the edge of chaos. They are characterized by the exceptional structural and compositional dynamics, and their multicomponent nature and polyfunctionality provide means for the finely tuned regulation of various intracellular processes. Changes in the external conditions can cause a disruption of the biogenesis of these cellular bodies leading to the irreversible aggregation of their constituent proteins, followed by the transition to a gel-like state and the emergence of amyloid fibrils. This work represents a historical overview of changes in our understanding of the intracellular space compartmentalization. It also reflects methodological breakthroughs that led to a change in paradigms in this area of science and discusses modern ideas about the organization of the intracellular space. It is emphasized here that the membrane-less organelles have to combine a certain resistance to the changes in their environment and, at the same time, show high sensitivity to the external signals, which ensures the normal functioning of the cell.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Intrinsically disordered proteins; Liquid-liquid phase separation; Membrane-less organelles

Mesh:

Substances:

Year:  2022        PMID: 35445278     DOI: 10.1007/s00018-022-04276-4

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  277 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

Review 2.  The nucleolus.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

Review 3.  Multi-functionality of proteins involved in GPCR and G protein signaling: making sense of structure-function continuum with intrinsic disorder-based proteoforms.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2019-08-19       Impact factor: 9.261

4.  Intrinsic Membrane Permeability to Small Molecules.

Authors:  Christof Hannesschlaeger; Andreas Horner; Peter Pohl
Journal:  Chem Rev       Date:  2019-04-05       Impact factor: 60.622

Review 5.  Protein intrinsic disorder and structure-function continuum.

Authors:  Vladimir N Uversky
Journal:  Prog Mol Biol Transl Sci       Date:  2019-06-08       Impact factor: 3.622

6.  X-ray crystal structures of 70S ribosome functional complexes.

Authors:  J H Cate; M M Yusupov; G Z Yusupova; T N Earnest; H F Noller
Journal:  Science       Date:  1999-09-24       Impact factor: 47.728

Review 7.  110 years of the Meyer-Overton rule: predicting membrane permeability of gases and other small compounds.

Authors:  Andreas Missner; Peter Pohl
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

8.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

Review 9.  p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure-Function Continuum Concept.

Authors:  Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2016-11-10       Impact factor: 5.923

10.  A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome.

Authors:  Zhenling Peng; Christopher J Oldfield; Bin Xue; Marcin J Mizianty; A Keith Dunker; Lukasz Kurgan; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2013-08-13       Impact factor: 9.261

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  5 in total

1.  Editorial: Intrinsically Disordered Proteins and Regions: The Challenge to the Structure-Function Relationship.

Authors:  Angelo Toto; Pietro Sormanni; Cristina Paissoni; Vladimir N Uversky
Journal:  Front Mol Biosci       Date:  2022-07-06

Review 2.  The Role of Ubiquitin in Regulating Stress Granule Dynamics.

Authors:  Laura J Krause; Maria G Herrera; Konstanze F Winklhofer
Journal:  Front Physiol       Date:  2022-05-25       Impact factor: 4.755

3.  BIAPSS: A Comprehensive Physicochemical Analyzer of Proteins Undergoing Liquid-Liquid Phase Separation.

Authors:  Aleksandra E Badaczewska-Dawid; Vladimir N Uversky; Davit A Potoyan
Journal:  Int J Mol Sci       Date:  2022-05-31       Impact factor: 6.208

4.  Chromatin Liquid-Liquid Phase Separation (LLPS) Is Regulated by Ionic Conditions and Fiber Length.

Authors:  Qinming Chen; Lei Zhao; Aghil Soman; Anastasia Yu Arkhipova; Jindi Li; Hao Li; Yinglu Chen; Xiangyan Shi; Lars Nordenskiöld
Journal:  Cells       Date:  2022-10-06       Impact factor: 7.666

Review 5.  Liquid-Liquid Phase Separation of Biomacromolecules and Its Roles in Metabolic Diseases.

Authors:  Zhihao Chen; Ying Huai; Wenjing Mao; Xuehao Wang; Kang Ru; Airong Qian; Hong Yang
Journal:  Cells       Date:  2022-09-27       Impact factor: 7.666

  5 in total

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