| Literature DB >> 32784450 |
Nicolas Lebouvier1,2, Fabrice Pagniez3, Young Min Na1, Da Shi4, Patricia Pinson1, Mathieu Marchivie5, Jean Guillon6, Tarek Hakki7, Rita Bernhardt7, Sook Wah Yee8, Claire Simons8, Marie-Pierre Lézé1,9, Rolf W Hartmann9, Angélique Mularoni10, Guillaume Le Baut1, Isabelle Krimm11,12, Ruben Abagyan4, Patrice Le Pape3, Marc Le Borgne1,10.
Abstract
A series of 2-aryl-3-azolyl-1-indolyl-propan-2-ols was designed as new anaEntities:
Keywords: CYP51; Candida species; X-ray crystallography; antifungal agents; azoles; cytochromes P450; docking; indole; microwave irradiation; selectivity
Year: 2020 PMID: 32784450 PMCID: PMC7464559 DOI: 10.3390/ph13080186
Source DB: PubMed Journal: Pharmaceuticals (Basel) ISSN: 1424-8247
Figure 1Structures of the main azole antifungal agents.
Scheme 1Synthesis of compounds 8a–g (Route 1). Reagents and conditions: (a) HCHOaq, room temperature (rt), 5 min; (b) SOCl2, reflux, 1 h; (c) NaH, 1H-indole, DMSO, rt, 12 h; (d) n-BuLi, ethylbenzoate derivatives, THF, −78 °C to rt, 12 h; (e) AcOH, Zn, THF, EtOH, ultrasound, 35 °C, 5 h; (f) TMSOI, NaOHaq, CH2Cl2, reflux, 48 h; (g) K2CO3, imidazole or 1H-1,2,4-triazole, CH3CN, reflux, 7 h.
Scheme 2Synthesis of compounds 8g and 11a–k (Route 2). Reagents and conditions: (a) K2CO3, imidazole or 1H-1,2,4-triazole, CH3CN, MW 85 °C, 50 W, 50 min; (b) NaOHaq 20%, TMSOI, CH2Cl2, reflux, 72 h; (c) NaH, indole derivative, DMSO, rt, 12 h.
Scheme 3Synthesis of compounds 11l and 11m. Reagents and conditions: (a) K2CO3, 1H-1,2,3-triazole, CH3CN, MW 85 °C, 50 W, 50 min; (b) K2CO3, 1H-1,2,3-triazole, CH3CN, 85 °C, 8 h; (c) NaOHaq 20%, TMSOI, CH2Cl2, reflux, 72 h; (d) NaH, indole, DMSO, rt, 12 h.
Figure 2View of the crystal structure of (R)-8g with our numbering scheme, displacement ellipsoids are drawn at the 30% probability level.
Figure 3View of the crystal structure of (S)-8g with our numbering scheme, displacement ellipsoids are drawn at the 30% probability level.
Anti-Candida activity of propanol derivatives 8a–g and 11a–m.
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| |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Compound | A | B | C | D | R1 | R2 | X | Y | MIC 1 (µg/mL) |
|
| CH | CH | N | CH | H | H | H | F | 0.03 |
|
| CH | CH | N | CH | H | H | H | Cl | 0.02 |
|
| CH | CH | N | CH | H | H | H | Br | 0.02 |
|
| CH | CH | N | CH | H | H | F | F | 0.00035 |
|
| CH | CH | N | CH | H | H | Cl | Cl | 0.062 |
|
| CH | CH | N | CH | H | H | H | CF3 | 0.23 |
|
| N | CH | N | CH | H | H | H | F | 0.21 |
|
| N | CH | N | CH | H | H | H | Cl | 0.024 |
|
| N | CH | N | CH | H | H | H | Br | 0.027 |
|
| N | CH | N | CH | H | H | F | F | 0.0198 |
|
| N | CH | N | CH | H | H | Cl | Cl | 0.000259 |
|
| N | CH | N | CH | H | H | Cl | Cl | 0.023 |
|
| N | CH | N | CH | H | H | Cl | Cl | 0.000256 |
|
| N | CH | N | CH | H | H | H | CF3 | 0.009 |
|
| N | CH | N | CH | CH3 | H | F | F | 0.022 |
|
| N | CH | N | CH | CH3 | H | Cl | Cl | 0.0058 |
|
| N | CH | N | CH | H | CH3 | F | Cl | 0.0011 |
|
| N | CH | N | CH | H | CH3 | Cl | Cl | 0.007 |
|
| N | CH | N | CH | CH3 | CH3 | F | F | 0.157 |
|
| N | CH | N | CH | CH3 | CH3 | Cl | Cl | 1.246 |
|
| N | N | CH | CH | H | H | Cl | Cl | >100 |
|
| N | CH | CH | N | H | H | Cl | Cl | >100 |
|
| 0.005 | ||||||||
|
| 0.02 | ||||||||
1 Minimum inhibitory concentration (MIC = IC80, µg/mL) was expressed as the mean of triplicate measures.
MIC 1 (µg/mL) spectrum of compounds 8a–g, 11a–k, ketoconazole (KTC), and FLC.
| Compound | ATCC2091 | CA98002 | CA98005 | ATCC6258 | CK98002 | CK98003 | CL98001 | ATCC90018 |
|---|---|---|---|---|---|---|---|---|
|
| 0.131 | 0.205 | 0.148 | >33.5 | 12.761 | 28.597 | 0.231 | 2.11 |
|
| 0.215 | 0.165 | 0.106 | >35.2 | 2.723 | >35.183 | 0.222 | 1.3 |
|
| 0.357 | 0.25 | 0.21 | >39.6 | 5.076 | 36.565 | 0.25 | 1.84 |
|
| 0.726 | 0.609 | 0.439 | 3.863 | 5.692 | 5.205 | 0.068 | 0.614 |
|
| 0.19 | 0.251 | 0.274 | 1.2 | 1.8 | 0.28 | 0.116 | 0.24 |
|
| 2.12 | 0.32 | 0.258 | 22.121 | 18.306 | 16.225 | 0.173 | 2.466 |
|
| 0.437 | 0.404 | 0.437 | 19.24 | 21.426 | 18.668 | 0.259 | 2.523 |
|
| 0.258 | 0.261 | 0.222 | 2.434 | 12.666 | 2.434 | 0.208 | 2.046 |
|
| 0.477 | 0.338 | 0.286 | 1.51 | 2.463 | 2.503 | 0.215 | 2.026 |
|
| 0.021 | 0.026 | 0.064 | 2.181 | 1.55 | 24.05 | 0.021 | 0.201 |
|
| <0.004 | <0.004 | <0.004 | 0.08 | 2.788 | 3.563 | <0.004 | 0.15 |
|
| 1.007 | 2.75 | 2.707 | 24.398 | 22.074 | 19.363 | 9.682 | >38.726 |
|
| <0.039 | <0.039 | 0.026 | 0.167 | 0.022 | 0.039 | 0.024 | 0.027 |
|
| 0.247 | 0.233 | 0.749 | 19.091 | 10.557 | 3.068 | 0.199 | 2 |
|
| 0.199 | 0.302 | 0.516 | 17.572 | 7.589 | 5.452 | 0.232 | 2.505 |
|
| 0.526 | 0.321 | 0.269 | >40 | >40 | >40 | 0.181 | >40 |
|
| 0.136 | 0.033 | 0.265 | 1.4 | 0.81 | 0.7 | 0.023 | 0.309 |
|
| 0.026 | 0.044 | 0.03 | 3.01 | 0.803 | 1.685 | 0.025 | 0.245 |
|
| 0.256 | 0.382 | 2.409 | 17.97 | 11.472 | 13.92 | 0.256 | 4.015 |
|
| 2.741 | 1.121 | 2.99 | 25.293 | 20.226 | >41.532 | 2.866 | 9.76 |
|
| 0.008 | 0.009 | 0.006 | 0.079 | 0.37 | 0.43 | 0.007 | 0.064 |
|
| 0.07 | 1 | 0.57 | 7.5 | 2 | 6.7 | 0.55 | 0.6 |
1 MIC (IC80, µg/mL) was expressed as the mean of triplicate measures. ATCC strains are reference strains (American Type Culture Collection). ATCC2091 is a Candida albicans strain. ATCC6258 is a Candida krusei strain. ATCC90018 is a Candida parapsilosis strain. CA = Candida albicans. CK = Candida krusei. CL = Candida lusitaniae.
Cytotoxicity activity on MRC-5 cells of propanol derivatives 8a–g and 11a–k.
| Compound | IC50 1 (µM) |
|---|---|
|
| 50 |
|
| 37 |
|
| 31 |
|
| 34 |
|
| 31 |
|
| 36 |
|
| >100 |
|
| >100 |
|
| 38 |
|
| 197.2 |
|
| 35.0 2 |
|
| 32 |
|
| 30 |
|
| 76 |
|
| 190.7 |
|
| 157 |
|
| 105.4 |
|
| 19 |
|
| 25 |
|
| 97.3 |
|
| 69.1 |
|
| >100 |
1 IC50 (half-maximal inhibitory concentration) values (µM) were expressed as the mean of triplicate measures. 2 Cytotoxicity activity of 8g previously determined [28].
Selectivity of compounds 11d, 8g, and its enantiomers on a panel of human P450-dependent enzymes (CYP19, CYP17, CYP26A1, CYP11B1, and CYP11B2).
| Compound | CYP19 1 IC50 (µM) | CYP17 2 IC50 (µM) | CYP26A1 3 IC50 (µM) | CYP11B1 4 IC50 (µM) (Inhibition Effect) | CYP11B2 4 IC50 (µM) (Inhibtion Effect) |
|---|---|---|---|---|---|
|
| 3.58 | - | - | - | - |
| (89) | (no inhibition) | ||||
|
| - | - | - | - | - |
| (27) | (<10%) | no inhibition | slight inhibition | ||
|
| - | - | 34 | - | - |
| (51) | (<5% inhibition) | - | no inhibition | slight inhibition | |
|
| - | - | 18 | - | - |
| (72) | (<5% inhibition) | - | no inhibition | no inhibition | |
|
| 29.75 | - | - | - | - |
|
| 0.030 | not active | - | - | - |
|
| 0.163 | - | - | - | - |
|
| 0.025 | - | - | - | - |
|
| - | - | 7 | - | - |
|
| - | 0.15 | - | - | - |
|
| - | 4.5 | 10 | - | - |
1 Values are the mean of at least two experiments performed in duplicate. % inhibition was determined at 36 µM. 2 Values are the mean of two experiments performed in duplicate. % inhibition was determined at 2.5 µM. 3 The IC50 values are the mean (±5%) of two experiments. 4 The results were obtained from three to four independent experiments.
Figure 4Predicted binding pose of (S)-8g (light green) using CaCYP51.
Figure 5Predicted binding pose of (R)-8g (cream) using CaCYP51.
Figure 6A schematic of detailed ligand atom interactions with the protein residues. Interactions that occur more than 30.0% of the simulation time in the selected trajectory (0.00 through 100.00 ns) are shown.
Figure 7A schematic of detailed ligand atom interactions of (R)-8g and (S)-8g with the protein residues of wild-type CaCYP51 protein. Interactions that occur more than 30.0% of the simulation time in the selected trajectory (0 through 100 ns) are shown. (Hydrophobic (purple), water bridges (blue), H-bonds (green), ionic (pink)).
Figure 83D images of (R)-8g (cyan) and (S)-8g (magenta) ligand-CaCYP51 protein complexes after MD simulation, showing key binding amino acids and positioning of the triazole ring above the heme (orange).
Figure 9CaCYP51-posaconazole complex (PDB 5FSA) with posaconazole (yellow) positioned along the access channel and above the heme (orange). (R)-8g (cyan) and (S)-8g (magenta) are aligned after MD simulations.