Literature DB >> 32780076

Switchable supracolloidal 3D DNA origami nanotubes mediated through fuel/antifuel reactions.

Saskia Groeer1, Andreas Walther2.   

Abstract

3D DNA origami provide access to the de novo design of monodisperse and functional bio(organic) nanoparticles, and complement structural protein engineering and inorganic and organic nanoparticle synthesis approaches for the design of self-assembling colloidal systems. We show small 3D DNA origami nanoparticles, which polymerize and depolymerize reversibly to nanotubes of micrometer lengths by applying fuel/antifuel switches. 3D DNA nanocylinders are engineered as a basic building block with different numbers of overhang strands at the open sides to allow for their assembly via fuel strands that bridge both overhangs, resulting in the supracolloidal polymerization. The influence of the multivalent interaction patterns and the length of the bridging fuel strand on efficient polymerization and nanotube length distribution is investigated. The polymerized multivalent nanotubes disassemble through toehold-mediated rehybridization by adding equimolar amounts of antifuel strands. Finally, Förster resonance energy transfer yields in situ insights into the kinetics and reversibility of the nanotube polymerization and depolymerization.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32780076      PMCID: PMC7612458          DOI: 10.1039/d0nr04209a

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  52 in total

Review 1.  Multivalency in supramolecular chemistry and nanofabrication.

Authors:  Alart Mulder; Jurriaan Huskens; David N Reinhoudt
Journal:  Org Biomol Chem       Date:  2004-11-05       Impact factor: 3.876

2.  Multivalency and cooperativity in supramolecular chemistry.

Authors:  Jovica D Badjić; Alshakim Nelson; Stuart J Cantrill; W Bruce Turnbull; J Fraser Stoddart
Journal:  Acc Chem Res       Date:  2005-09       Impact factor: 22.384

3.  Enzyme-free nucleic acid logic circuits.

Authors:  Georg Seelig; David Soloveichik; David Yu Zhang; Erik Winfree
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

4.  Guided hierarchical co-assembly of soft patchy nanoparticles.

Authors:  André H Gröschel; Andreas Walther; Tina I Löbling; Felix H Schacher; Holger Schmalz; Axel H E Müller
Journal:  Nature       Date:  2013-11-03       Impact factor: 49.962

5.  Photothermally-triggered self-assembly of gold nanorods.

Authors:  Daniele Fava; Mitchell A Winnik; Eugenia Kumacheva
Journal:  Chem Commun (Camb)       Date:  2009-03-18       Impact factor: 6.222

6.  Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.

Authors:  Thomas Gerling; Klaus F Wagenbauer; Andrea M Neuner; Hendrik Dietz
Journal:  Science       Date:  2015-03-27       Impact factor: 47.728

7.  Protein Nanotube Selectively Cleavable with DNA: Supramolecular Polymerization of "DNA-Appended Molecular Chaperones".

Authors:  Daiki Kashiwagi; Seunghyun Sim; Tatsuya Niwa; Hideki Taguchi; Takuzo Aida
Journal:  J Am Chem Soc       Date:  2017-12-13       Impact factor: 15.419

8.  Autonomous dynamic control of DNA nanostructure self-assembly.

Authors:  Leopold N Green; Hari K K Subramanian; Vahid Mardanlou; Jongmin Kim; Rizal F Hariadi; Elisa Franco
Journal:  Nat Chem       Date:  2019-04-22       Impact factor: 24.427

9.  Information-based autonomous reconfiguration in systems of interacting DNA nanostructures.

Authors:  Philip Petersen; Grigory Tikhomirov; Lulu Qian
Journal:  Nat Commun       Date:  2018-12-18       Impact factor: 14.919

10.  Ultrastructural characterizations of DNA nanotubes using scanning tunneling and atomic force microscopes.

Authors:  Adele Rafati; Pooria Gill
Journal:  J Microsc Ultrastruct       Date:  2015-09-28
View more
  3 in total

1.  Controllable assembly of synthetic constructs with programmable ternary DNA interaction.

Authors:  Huangchen Cui; Tianqing Zhang; Yuhan Kong; Hang Xing; Bryan Wei
Journal:  Nucleic Acids Res       Date:  2022-06-17       Impact factor: 19.160

2.  Molecular communication relays for dynamic cross-regulation of self-sorting fibrillar self-assemblies.

Authors:  Saskia Groeer; Katja Schumann; Sebastian Loescher; Andreas Walther
Journal:  Sci Adv       Date:  2021-11-24       Impact factor: 14.136

3.  Dynamic Shape Transformation of a DNA Scaffold Applied for an Enzyme Nanocarrier.

Authors:  Peng Lin; Huyen Dinh; Eiji Nakata; Takashi Morii
Journal:  Front Chem       Date:  2021-06-24       Impact factor: 5.221

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.