Literature DB >> 35713533

Controllable assembly of synthetic constructs with programmable ternary DNA interaction.

Huangchen Cui1, Tianqing Zhang1, Yuhan Kong2, Hang Xing2, Bryan Wei1.   

Abstract

Compared with the dual binding components in a binary interaction, the third component of a ternary interaction often serves as modulator or regulator in biochemical processes. Here, we presented a programmable ternary interaction strategy based on the natural DNA triplex structure. With the DNA triplex-based ternary interaction, we have successfully demonstrated controllable hierarchical assemblies from nanometer scale synthetic DNA nanostructure units to micrometer scale live bacteria. A selective signaling system responsive to orthogonal nucleic acid signals via ternary interaction was also demonstrated. This assembly method could further enrich the diversified design schemes of DNA nanotechnology.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2022        PMID: 35713533      PMCID: PMC9262601          DOI: 10.1093/nar/gkac478

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  43 in total

1.  Programmable cell adhesion encoded by DNA hybridization.

Authors:  Ravi A Chandra; Erik S Douglas; Richard A Mathies; Carolyn R Bertozzi; Matthew B Francis
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-30       Impact factor: 15.336

Review 2.  Molecular engineering of guanine-rich sequences: Z-DNA, DNA triplexes, and G-quadruplexes.

Authors:  Osman Doluca; Jamie M Withers; Vyacheslav V Filichev
Journal:  Chem Rev       Date:  2013-02-07       Impact factor: 60.622

3.  Assembly of the particle of tobacco mosaic virus from RNA and disks of protein.

Authors:  P J Butler; A Klug
Journal:  Nat New Biol       Date:  1971-01-13

4.  Gigadalton-scale shape-programmable DNA assemblies.

Authors:  Klaus F Wagenbauer; Christian Sigl; Hendrik Dietz
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

Review 5.  DNA triple helices: biological consequences and therapeutic potential.

Authors:  Aklank Jain; Guliang Wang; Karen M Vasquez
Journal:  Biochimie       Date:  2008-02-21       Impact factor: 4.079

6.  Oligodeoxyribonucleotide length and sequence effects on intermolecular purine-purine-pyrimidine triple-helix formation.

Authors:  A J Cheng; M W Van Dyke
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

7.  Hierarchical Assembly of Nucleic Acid/Coiled-Coil Peptide Nanostructures.

Authors:  Alex Buchberger; Chad R Simmons; Nour Eddine Fahmi; Ronit Freeman; Nicholas Stephanopoulos
Journal:  J Am Chem Soc       Date:  2020-01-05       Impact factor: 15.419

8.  Rational Design of Allosteric Nanodevices Based on DNA Triple Helix.

Authors:  Tianqing Zhang; Bryan Wei
Journal:  J Am Chem Soc       Date:  2021-10-04       Impact factor: 15.419

Review 9.  Triplex-forming oligonucleotides: a third strand for DNA nanotechnology.

Authors:  Arun Richard Chandrasekaran; David A Rusling
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

10.  Programmed synthesis of three-dimensional tissues.

Authors:  Michael E Todhunter; Noel Y Jee; Alex J Hughes; Maxwell C Coyle; Alec Cerchiari; Justin Farlow; James C Garbe; Mark A LaBarge; Tejal A Desai; Zev J Gartner
Journal:  Nat Methods       Date:  2015-08-31       Impact factor: 28.547

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