Literature DB >> 31011170

Autonomous dynamic control of DNA nanostructure self-assembly.

Leopold N Green1,2, Hari K K Subramanian3, Vahid Mardanlou4, Jongmin Kim5,6, Rizal F Hariadi7, Elisa Franco8,9.   

Abstract

Biological cells routinely reconfigure their shape using dynamic signalling and regulatory networks that direct self-assembly processes in time and space, through molecular components that sense, process and transmit information from the environment. A similar strategy could be used to enable life-like behaviours in synthetic materials. Nucleic acid nanotechnology offers a promising route towards this goal through a variety of sensors, logic and dynamic components and self-assembling structures. Here, by harnessing both dynamic and structural DNA nanotechnology, we demonstrate dynamic control of the self-assembly of DNA nanotubes-a well-known class of programmable DNA nanostructures. Nanotube assembly and disassembly is controlled with minimal synthetic gene systems, including an autonomous molecular oscillator. We use a coarse-grained computational model to capture nanotube length distribution dynamics in response to inputs from nucleic acid circuits. We hope that these results may find use for the development of responsive nucleic acid materials, with potential applications in biomaterials science, nanofabrication and drug delivery.

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Year:  2019        PMID: 31011170     DOI: 10.1038/s41557-019-0251-8

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  28 in total

1.  A dissipative pathway for the structural evolution of DNA fibres.

Authors:  Felix J Rizzuto; Casey M Platnich; Xin Luo; Yao Shen; Michael D Dore; Christophe Lachance-Brais; Alba Guarné; Gonzalo Cosa; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2021-08-09       Impact factor: 24.427

2.  Standardized excitable elements for scalable engineering of far-from-equilibrium chemical networks.

Authors:  Samuel W Schaffter; Kuan-Lin Chen; Jackson O'Brien; Madeline Noble; Arvind Murugan; Rebecca Schulman
Journal:  Nat Chem       Date:  2022-08-04       Impact factor: 24.274

Review 3.  Dissipative DNA nanotechnology.

Authors:  Erica Del Grosso; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  Nat Chem       Date:  2022-06-06       Impact factor: 24.274

4.  Equilibrium mechanisms of self-limiting assembly.

Authors:  Michael F Hagan; Gregory M Grason
Journal:  Rev Mod Phys       Date:  2021-06-11       Impact factor: 50.485

5.  Switchable supracolloidal 3D DNA origami nanotubes mediated through fuel/antifuel reactions.

Authors:  Saskia Groeer; Andreas Walther
Journal:  Nanoscale       Date:  2020-08-20       Impact factor: 7.790

6.  Double- to Single-Strand Transition Induces Forces and Motion in DNA Origami Nanostructures.

Authors:  Fatih N Gür; Susanne Kempter; Florian Schueder; Christoph Sikeler; Maximilian J Urban; Ralf Jungmann; Philipp C Nickels; Tim Liedl
Journal:  Adv Mater       Date:  2021-08-01       Impact factor: 30.849

7.  Fuel-Driven Transient DNA Strand Displacement Circuitry with Self-Resetting Function.

Authors:  Jie Deng; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-12-02       Impact factor: 15.419

8.  Autocatalytic and oscillatory reaction networks that form guanidines and products of their cyclization.

Authors:  Alexander I Novichkov; Anton I Hanopolskyi; Xiaoming Miao; Linda J W Shimon; Yael Diskin-Posner; Sergey N Semenov
Journal:  Nat Commun       Date:  2021-05-20       Impact factor: 14.919

9.  Dynamic self-assembly of compartmentalized DNA nanotubes.

Authors:  Siddharth Agarwal; Melissa A Klocke; Passa E Pungchai; Elisa Franco
Journal:  Nat Commun       Date:  2021-06-11       Impact factor: 14.919

10.  A small-molecule chemical interface for molecular programs.

Authors:  Vasily A Shenshin; Camille Lescanne; Guillaume Gines; Yannick Rondelez
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

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