| Literature DB >> 32714406 |
Xin Yang1, Yahui Li1, Haibing Qian1.
Abstract
BACKGROUND: Esophageal carcinoma (ESCA) is not only a threat to people's health but also the sixth most common cause of cancer-related mortality worldwide.Entities:
Year: 2020 PMID: 32714406 PMCID: PMC7333027 DOI: 10.1155/2020/4821056
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1Flowchart for network pharmacology and bioinformatics analysis of publicly available data.
The detail information of four GEO datasets.
| GEO series | Platform | Gene chip | Normal ( | ESCA ( | Experiment type |
|---|---|---|---|---|---|
| GSE1420 | GPL96 | HG-U133 A | 8 | 8 | Array |
| GSE20347 | GPL571 | HG-U133 A | 17 | 17 | Array |
Figure 2DEGs expression profile in the GEO, GeneCards, and DisGeNET databases. (a) Volcano plots showed the number of DEGs identified from GSE1420. (b) Volcano plots showed the number of DEGS identified from GSE20347. (c) Heat map of DEGs in GSE1420 (top 60). Hot spots ranged from red (high expression) to green (low expression). (d) Heat map of DEGs in GSE20347 (top 60). Hot spots ranged from red (high expression) to green (low expression). (e) Venn diagram demonstrates the intersections of genes between GSE1420 and GSE20347. (f) Venn diagram demonstrates the intersections of genes between GEO, GeneCards, and DisGeNET databases.
Clinical characteristics of ESCA patients.
| Characteristic |
|
|---|---|
| Age | |
| <55 years | 52 (28.42) |
| ≥55 years | 131 (71.58) |
|
| |
| Gender | |
| Female | 27 (14.75) |
| Male | 156 (85.25) |
|
| |
| Survival status | |
| Death | 76 (41.53) |
| Survival | 107 (58.47) |
|
| |
| Alcohol consumption history | |
| Yes | 128 (69.95) |
| No | 55 (30.05) |
|
| |
| Radiation therapy | |
| Yes | 48 (26.23) |
| No | 135 (73.77) |
|
| |
| Pharmaceutical | |
| Yes | 42 (22.95) |
| No | 141 (77.05) |
|
| |
|
| |
| | 2 (1.09) |
| | 32 (17.49) |
| | 44 (24.04) |
| | 100 (54.64) |
| | 5 (2.73) |
|
| |
|
| |
| | 79 (43.17) |
| | 73 (39.89) |
| | 21 (44.48) |
| | 8 (4.37) |
| | 2 (1.09) |
|
| |
| Stage | |
| I | 14 (7.65) |
| II | 92 (50.27) |
| III | 65 (35.52) |
| IV | 12 (6.56) |
|
| |
| Histological grade | |
| | 19 (10.38) |
| | 76 (41.53) |
| | 48 (26.23) |
| | 40 (21.86) |
|
| |
|
| |
| | 148 (80.87) |
| | 12 (6.56) |
| | 23 (12.57) |
Figure 3EpCAM expression and survival analysis in ESCA. (a) EpCAM expression in ESCA (blue dot: low expression; red dot: high expression). (b) The blue line represents ESCA patients with relatively low EpCAM mRNA expression, and the red line represents ESCA patients with high expression of the aforementioned gene.
Figure 4EpCAM expression in ESCA. EpCAM expression was compared between normal tissues and ESCA tissues as well as according to the histologic grade, cancer stage, M classification, patient age, gender, N classification, treatment with radiation, alcohol consumption history, and T classification.
Univariate analysis and multivariate analysis of the correlation of EpCAM expression with OS among ESCA patients.
| Parameter | Univariate analysis | Multivariate analysis | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI |
| HR | 95% CI |
| |
| Age | 1.00 | 0.98–1.03 | 0.731 | 1.02 | 0.98–1.05 | 0.323 |
| Gender | 4.23 | 1.02–17.47 |
| 2.15 | 0.49–9.46 | 0.310 |
| Histologic grade | 1.48 | 0.92–2.36 | 0.102 | 0.94 | 0.53–1.66 | 0.821 |
| Stage | 2.51 | 1.68–3.75 |
| 1.73 | 0.57–5.27 | 0.336 |
|
| 1.32 | 0.90–1.94 | 0.159 | 1.14 | 0.66–1.96 | 0.633 |
|
| 3.64 | 1.60–8.28 |
| 1.87 | 0.27–13.09 | 0.529 |
|
| 1.74 | 1.27–2.39 |
| 1.34 | 0.72–2.46 | 0.363 |
| EpCAM | 1.00 | 1.00–1.01 |
| 1.00 | 1.00–1.01 |
|
Bold values indicate P < 0.05. HR, hazard ratio; CI, confidence interval.
The 2D protein-ligand interaction.
| No. | Compound name | CAS | Score | Hydrogen bond | Hydrophobic interactions |
|---|---|---|---|---|---|
| 1 | Ginsenoside Rg3 | 14197-60-5 | 5.91 | Lys151, Lys221 | Asp232, Leu242, Val220, Pro244, Gly222, |
| 2 | Ginsenoside Rh2 | 78214-33-2 | 5.24 | Leu240 | Glu169, Ile170, Leu233, Asp232, Asp241, |
| 3 | Ginsenoside Rg5 | 186763-78-0 | 4.10 | Lys151, Asp241 | Tyr174, Glu169, Leu233, Leu242, Asp219, |
| 4 | Ginsenoside Rk3 | 364779-15-7 | 3.59 | Lys151, Asp241 | Gly222, Lys229, Arg173, Asp219, Asp232, |
Figure 5Docking modes of ginsenosides with EpCAM. (a) Original ligand (DMU301), (b) ginsenoside Rg3, (c) ginsenoside Rh2, (d) ginsenoside Rg5, and (e) ginsenoside Rk3.