Literature DB >> 7630882

LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions.

A C Wallace1, R A Laskowski, J M Thornton.   

Abstract

The LIGPLOT program automatically generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank file input. The output is a colour, or black-and-white, PostScript file giving a simple and informative representation of the intermolecular interactions and their strengths, including hydrogen bonds, hydrophobic interactions and atom accessibilities. The program is completely general for any ligand and can also be used to show other types of interaction in proteins and nucleic acids. It was designed to facilitate the rapid inspection of many enzyme complexes, but has found many other applications.

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Year:  1995        PMID: 7630882     DOI: 10.1093/protein/8.2.127

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  1366 in total

1.  PDBsum: summaries and analyses of PDB structures.

Authors:  R A Laskowski
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications.

Authors:  J Y Lee; C Chang; H K Song; J Moon; J K Yang; H K Kim; S T Kwon; S W Suh
Journal:  EMBO J       Date:  2000-03-01       Impact factor: 11.598

3.  The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA).

Authors:  W Blankenfeldt; M Asuncion; J S Lam; J H Naismith
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

4.  Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity.

Authors:  T Izard
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

5.  Molecular mimicry of substrate oxygen atoms by water molecules in the beta-amylase active site.

Authors:  G Pujadas; J Palau
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

6.  One site fits both: a model for the ternary complex of folate + NADPH in R67 dihydrofolate reductase, a D2 symmetric enzyme.

Authors:  E E Howell; U Shukla; S N Hicks; R D Smiley; L A Kuhn; M I Zavodszky
Journal:  J Comput Aided Mol Des       Date:  2001-11       Impact factor: 3.686

Review 7.  Classification of protein folds.

Authors:  Robert B Russell
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

8.  Crystal structure of the tetrameric Mad1-Mad2 core complex: implications of a 'safety belt' binding mechanism for the spindle checkpoint.

Authors:  Lucia Sironi; Marina Mapelli; Stefan Knapp; Anna De Antoni; Kuan-Teh Jeang; Andrea Musacchio
Journal:  EMBO J       Date:  2002-05-15       Impact factor: 11.598

9.  Structural basis for recognition by an in vitro evolved affibody.

Authors:  Martin Högbom; Malin Eklund; Per-Ake Nygren; Pär Nordlund
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

10.  Structural basis of rotavirus strain preference toward N-acetyl- or N-glycolylneuraminic acid-containing receptors.

Authors:  Xing Yu; Vi T Dang; Fiona E Fleming; Mark von Itzstein; Barbara S Coulson; Helen Blanchard
Journal:  J Virol       Date:  2012-10-03       Impact factor: 5.103

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