| Literature DB >> 32709094 |
Łukasz Lewandowski1, Marta Kepinska1, Halina Milnerowicz1.
Abstract
Little is known about the contribution of each of the three superoxide dismutase isozymes (SODs) to the total SOD activity in extracellular fluids. This study was aimed to investigate the alterations in concentration/activity of (SODs) in plasma, in context of sex, obesity, exposition to cigarette smoke, and genotypic variability of five selected single nucleotide polymorphisms (SNPs) in genes SOD1, SOD2, SOD3. Men showed higher SOD1 concentration, lower SOD3 concentration and higher total antioxidative capacity (TAC) values. Intersexual variability was observed in concentration of copper, zinc, and cadmium. The obese showed higher total oxidative capacity regardless of sex. An increase in SOD2 activity was coexistent with obesity in men, and exposition to cigarette smoke in non-obese individuals. Additionally, in state of this exposition, Cu,Zn-SOD contribution to the total SOD was lower. Interestingly, over 90% of the obese were of C/T genotype of rs4880 (SOD2). Non-obese of T/T genotype (rs4880) were of lower total SOD activity due to decrease in both Cu,Zn-SOD and Mn-SOD activities. SNP rs2234694 was associated with differences in concentration of SODs, depending on obesity status. Correlations indicate that both TAC and SODs, together, may adapt to insulin resistance and inflammation-derived oxidative stress found in obesity. This topic should be further investigated.Entities:
Keywords: metals; obesity; oxidative stress; single nucleotide polymorphisms; superoxide dismutase isozymes
Mesh:
Substances:
Year: 2020 PMID: 32709094 PMCID: PMC7404310 DOI: 10.3390/ijms21145069
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of intersexual variability, in individuals not exposed to cigarette smoke.
| Parameter | Women ( | Men ( |
|
|---|---|---|---|
|
| {18.14; | {35.28; |
|
|
| {0.135; | {0.270; |
|
| SOD2 (ng/mL) | {21.80; | {20.19; | 0.9251 |
| SOD2 (ng/mg total protein) | {0.168; | {0.152; | 0.9052 |
|
| {27.71; | {23.24; |
|
| SOD3 (ng/mg total protein) | {0.195; | {0.183; | 0.0643 |
| SOD (U/L) | {1700; | {1749; | 0.2412 |
| SOD (U/g total protein) | {13.20; | {12.64; | 0.3026 |
| SOD (U/mg SODs) | {18.60; | {18.03; | 0.3374 |
| Cu,Zn-SOD (U/L) | {514; | {573; | 0.5977 |
| Cu,Zn-SOD (U/g total protein) | {4.23; | {4.35; | 0.5234 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {8.91; | {7.76; | 0.2030 |
| Cu,Zn-SOD (% SOD activity) | {28.60; | {32.40; | 0.5476 |
| Mn-SOD (U/L) | {979; | {1098; | 0.5194 |
| Mn-SOD (U/g total protein) | {6.86; | {8.60; | 0.5314 |
| Mn-SOD (U/mg SOD2) | {33.27; | {37.76; | 0.5265 |
|
| {0.219; | {0.345; |
|
|
| {3.36; | {5.29; |
|
|
| {976; | {912; |
|
|
| {845; | {961; |
|
|
| {0.74; | {0.94; |
|
|
| {1.68; | {1.12; |
|
Values shown as: 1st quartile; median value; 3rd quartile. ** significant difference (median values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of obesity, in women not exposed to cigarette smoke.
| Parameter | Control Group ( | Obese Group ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | 0.3002 | ||
| SOD1 (ng/mg total protein) | 0.0982 | ||
| SOD2 (ng/mL) | {21.16; | {22.63; | 0.4141 |
| SOD2 (ng/mg total protein) | 0.0691 | ||
| SOD3 (ng/mL) | 0.8747 | ||
| SOD3 (ng/mg total protein) | 0.0903 | ||
| SOD (U/L) | 0.6667 | ||
| SOD (U/g total protein) | 0.8308 | ||
| SOD (U/mg SODs) | 0.1923 | ||
| Cu,Zn-SOD (U/L) | 0.1585 | ||
| Cu,Zn-SOD (U/g total protein) | 0.9566 | ||
| Cu,Zn-SOD (U/mg SOD1+SOD3) | 0.0814 | ||
| Cu,Zn-SOD (% SOD activity) | 0.2033 | ||
| Mn-SOD (U/L) | 0.8311 | ||
| Mn-SOD (U/g total protein) | 0.6625 | ||
| Mn-SOD (U/mg SOD2) | 0.6614 | ||
|
|
| ||
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|
| ||
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|
| ||
| Zn (µg/L) | 0.5005 | ||
|
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| ||
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|
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. * significant difference (mean values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of obesity, in men not exposed to cigarette smoke.
| Parameter | Control Group ( | Obese Group ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | 0.0575 | ||
| SOD1 (ng/mg total protein) | 0.1275 | ||
| SOD2 (ng/mL) | {24.71; | {17.84; | 0.0697 |
| SOD2 (ng/mg total protein) | {0.183; | {0.147; | 0.2968 |
| SOD3 (ng/mL) | 0.8857 | ||
| SOD3 (ng/mg total protein) | 0.4982 | ||
| SOD (U/L) | 0.5392 | ||
| SOD (U/g total protein) | 0.3559 | ||
| SOD (U/mg SODs) | 0.5601 | ||
| Cu,Zn-SOD (U/L) | {530; | {580; | 0.4827 |
| Cu,Zn-SOD (U/g total protein) | {4.35; | {4.79; | 0.5904 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | 0.0648 | ||
| Cu,Zn-SOD (% SOD activity) | 0.3181 | ||
|
|
| ||
|
|
| ||
|
|
| ||
| TAC (mM UAE) | 0.0581 | ||
| MDA (µmol/L) | 0.2350 | ||
| Cu (µg/L) | 0.8293 | ||
| Zn (µg/L) | 0.6960 | ||
| Zn/Cu | 0.5876 | ||
| Cd (mg/g Hb) | 0.3178 |
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. * significant difference (mean values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of exposition to cigarette smoke, in non-obese individuals.
| Parameter | Non-Exposed ( | Exposed ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | {18.86; | {22.52; | 0.7706 |
| SOD1 (ng/mg total protein) | {0.160; | {0.212; | 0.2788 |
| SOD2 (ng/mL) | {21.73; | {21.97; | 0.7589 |
| SOD2 (ng/mg total protein) | {0.169; | {0.168; | 0.6714 |
| SOD3 (ng/mL) | {25.51; | {13.42; | 0.1879 |
| SOD3 (ng/mg total protein) | {0.179; | {0.103; | 0.1779 |
| SOD (U/L) | {1569; | 2087; | 0.0910 |
| SOD (U/g total protein) | {12.15; | {15.61; | 0.1926 |
| SOD (U/mg SODs) | {18.80; | {17.84; | 0.9650 |
| Cu,Zn-SOD (U/L) | {495; | {607; | 0.6911 |
| Cu,Zn-SOD (U/g total protein) | {4.05; | {4.77; | 0.6193 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {9.21; | {7.95; | 0.9185 |
| Cu,Zn-SOD (% SOD activity) | {29.80; | {24.57; | 0.0592 |
|
| {1004; | {1326; |
|
|
| {6.92; | {11.05; |
|
| Mn-SOD (U/mg SOD2) | {34.94; | {33.32; | 0.6929 |
| TAC (mM UAE) | {0.249; | {0.287; | 0.5321 |
| MDA (µmol/L) | {3.86; | {4.40; | 0.9683 |
| Cu (µg/L) | 0.3597 | ||
| Zn (µg/L) | 0.5348 | ||
| Zn/Cu | 0.9811 | ||
|
| {1.09; | {5.32; |
|
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. ** significant difference (median values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of exposition to cigarette smoke, in obese individuals.
| Parameter | Non-Exposed ( | Exposed ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | {30.44; | {27.20; | 0.5469 |
| SOD1 (ng/mg total protein) | {0.267; | {0.206; | 0.4778 |
| SOD2 (ng/mL) | {19.69; | {20.27; | 0.6636 |
| SOD2 (ng/mg total protein) | {0.151; | {0.157; | 0.4478 |
| SOD3 (ng/mL) | {25.64; | {17.34; | 0.1649 |
| SOD3 (ng/mg total protein) | {0.202; | {0.142; | 0.0853 |
| SOD (U/L) | {1971; | {1723; | 1.000 |
| SOD (U/g total protein) | {15.31; | {13.75; | 0.8763 |
| SOD (U/mg SODs) | {17.95; | {20.11; | 0.3488 |
| Cu,Zn-SOD (U/L) | {580; | {652; | 0.6540 |
| Cu,Zn-SOD (U/g total protein) | {5.04; | {5.06; | 0.4380 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {7.21; | {8.92; | 0.8763 |
| Cu,Zn-SOD (% SOD activity) | {29.94; | {28.02; | 0.3907 |
| Mn-SOD (U/L) | {1105; | {1111; | 0.3625 |
| Mn-SOD (U/g total protein) | {9.27; | {8.73; | 0.9243 |
| Mn-SOD (U/mg SOD2) | {37.26; | {42.08; | 0.4668 |
| TAC (mM UAE) | {0.360; | {0.330; | 0.8559 |
| MDA (µmol/L) | {5.83; | {6.22; | 0.3653 |
| Cu (µg/L) | 0.3889 | ||
| Zn (µg/L) | {892; | {860; | 0.3947 |
| Zn/Cu | 0.1263 | ||
|
|
|
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. * significant difference (mean values).
Spearman correlation matrix between selected variables, in the entire population sample (n = 94).
| Variable | Age (years) | TChol (mg/dL) | TG (mg/dL) | HDL-Chol (mg/dL) | LDL-Chol (mg/dL) | CRP (mg/L) | Glucose (mmol/L) | Insulin (mU/L) | BMI | HOMA-IR |
|---|---|---|---|---|---|---|---|---|---|---|
| Cu (µg/L) | 0.25 | 0.48 | 0.25 | 0.37 | 0.34 | |||||
| Zn (µg/L) | 0.28 | −0.42 | 0.24 | 0.22 | ||||||
| Cd (mg/g Hb) | 0.41 | 0.23 | ||||||||
| SOD1 (ng/mL) | 0.32 | −0.48 | 0.28 | 0.30 | ||||||
| SOD2 (ng/mL) | ||||||||||
| SOD3 (ng/mL) | ||||||||||
| SOD (U/L) | −0.24 | −0.26 | −0.26 | −0.31 | −0.21 | −0.28 | ||||
| Cu,Zn-SOD (U/L) | −0.37 | −0.25 | −0.26 | −0.26 | ||||||
| Mn-SOD (U/L) | ||||||||||
| Cu,Zn-SOD | −0.41 | 0.23 | −0.26 | |||||||
| TAC (mM UAE) | 0.43 | 0.30 | −0.37 | 0.32 | 0.42 | 0.23 | 0.59 | 0.23 | ||
| MDA (µmol/L) | 0.28 | 0.23 | −0.33 | 0.34 | 0.27 | 0.24 | 0.48 |
Significant correlations are colored, depending on direction (red—negative, green—positive). Color saturation depends on the magnitude of correlation (ρ value).
Spearman correlation matrix between selected variables, in the entire population sample (n = 94).
| Variable | SOD1 (ng/mL) | SOD2 (ng/mL) | SOD3 (ng/mL) | SOD (U/L) | Cu,Zn-SOD (U/L) | Mn-SOD (U/L) | Cu,Zn-SOD (% SOD activity) | TAC (mM UAE) | MDA (µmol/L) | Cu (µg/L) | Zn (µg/L) | Cd (mg/g Hb) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SOD1 (ng/mL) | −0.29 | 0.23 | 0.19 | 0.33 | 0.24 | 0.36 | ||||||
| SOD2 (ng/mL) | −0.29 | |||||||||||
| SOD3 (ng/mL) | 0.23 | 0.19 | 0.24 | |||||||||
| SOD (U/L) | 0.19 | 0.66 | 0.64 | −0.24 | ||||||||
| Cu,Zn-SOD (U/L) | 0.33 | 0.19 | 0.66 | 0.78 | −0.31 | |||||||
| Mn-SOD (U/L) | 0.64 | −0.55 | −0.30 | 0.22 | ||||||||
| Cu,Zn-SOD (% SOD activity) | 0.24 | 0.24 | 0.78 | −0.55 | −0.28 | |||||||
| TAC (mM UAE) | 0.36 | 0.33 | 0.22 | |||||||||
| MDA (µmol/L) | −0.31 | −0.28 | 0.33 | 0.24 |
Significant correlations are colored, depending on direction (red—negative, green—positive). Color saturation depends on the magnitude of correlation (ρ value).
Contingency table of genotype distribution of the selected single nucleotide polymorphisms (SNPs), in context of obesity.
| SNP (Gene) | Genotype | Control Group ( | Obese Group ( |
|
|---|---|---|---|---|
| rs2234694 ( | A/A | 43 (42.02) | 36 (36.98) | 0.5807 |
| A/C | 7 (7.98) | 8 (7.02) | ||
| rs5746105 ( | C/C | 3 (5.32) | 7 (4.68) | 0.2985 |
| C/T | 24 (22.87) | 19 (20.13) | ||
| T/T | 23 (21.81) | 18 (19.19) | ||
|
| C/C | 8 (5.32) | 2 (4.68) |
|
| C/T | 31 (38.30) | 41 (33.70) | ||
| T/T | 11 (6.38) | 1 (5.62) | ||
| rs927450 ( | T/T | 16 (15.43) | 13 (13.57) | 0.8364 |
| T/C | 22 (23.40) | 22 (20.60) | ||
| C/C | 12 (11.17) | 9 (9.83) | ||
| rs8192287 ( | G/G | 50 | 44 | 1.0000 |
Data shown as count (expected count).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs5746105 (SOD2), in non-obese individuals.
| Parameter | C/C or C/T Genotype ( | T/T Genotype ( |
|---|---|---|
| SOD1 (ng/mL) | {23.43; | {18.86; |
| SOD1 (ng/mg total protein) | {0.160; | {0.161; |
| SOD2 (ng/mL) | {21.97; | {22.34; |
| SOD2 (ng/mg total protein) | {0.168; | {0.176; |
| SOD3 (ng/mL) | {20.50; | {25.46; |
| SOD3 (ng/mg total protein) | {0.158; | {0.184; |
| SOD (U/L) | {1642; | {1602; |
| SOD (U/g total protein) | {11.61; | {13.20; |
| SOD (U/mg SODs) | {20.25; | {16.66; |
| Cu,Zn-SOD (U/L) | {495; | {530; |
| Cu,Zn-SOD (U/g total protein) | {3.90; | {4.05; |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {8.90; | {10.36; |
| Cu,Zn-SOD (% SOD activity) | {27.92; | {25.49; |
| Mn-SOD (U/L) | {1118; | {979; |
| Mn-SOD (U/g total protein) | {8.14; | {8.03; |
| Mn-SOD (U/mg SOD2) | {39.10; | {27.21; |
| TAC (mM UAE) | {0.266; | {0.249; |
| MDA (µmol/L) | {4.05; | {3.82; |
| Cu (µg/L) | {972; | {830; |
| Zn (µg/L) | {853; | {854; |
| Zn/Cu | {0.81; | {0.84; |
Values shown as: {1st quartile; median value; 3rd quartile}.
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs5746105 (SOD2), in obese individuals.
| Parameter | C/C or C/T Genotype ( | T/T Genotype ( |
|---|---|---|
| SOD1 (ng/mL) | {29.64; | {30.12; |
| SOD1 (ng/mg total protein) | {0.225; | {0.274; |
| SOD2 (ng/mL) | {18.17; | {21.66; |
| SOD2 (ng/mg total protein) | {0.151; | {0.166; |
| SOD3 (ng/mL) | {23.57; | {25.60; |
| SOD3 (ng/mg total protein) | {29.64; | {30.12; |
| SOD (U/L) | {2016; | {1697; |
| SOD (U/g total protein) | {16.96; | {12.64; |
| SOD (U/mg SODs) | {19.53; | {18.03; |
| Cu,Zn-SOD (U/L) | {608; | {610; |
| Cu,Zn-SOD (U/g total protein) | {5.12; | {4.81; |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {7.48; | {8.04; |
| Cu,Zn-SOD (% SOD activity) | {28.65; | {29.47; |
| Mn-SOD (U/L) | {1140; | {1047; |
| Mn-SOD (U/g total protein) | {9.71; | {8.96; |
| Mn-SOD (U/mg SOD2) | {42.12; | {36.92; |
| TAC (mM UAE) | {0.360; | {0.324; |
| MDA (µmol/L) | {6.10; | {5.91; |
| Cu (µg/L) | {935; | {960; |
| Zn (µg/L) | {894; | {878; |
| Zn/Cu | {0.79; | {0.72; |
Values shown as: {1st quartile; median value; 3rd quartile}.
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs927450 (SOD2), in non-obese individuals.
| Parameter | C/C Genotype ( | T/C Genotype ( | T/T Genotype ( |
|---|---|---|---|
| SOD1 (ng/mL) | {19.32; | {20.69; | {17.95; |
| SOD1 (ng/mg total protein) | {0.178; | {0.161; | {0.146; |
| SOD2 (ng/mL) | {22.29; | {19.97; | {22.34; |
| SOD2 (ng/mg total protein) | {0.186; | {0.159; | {0.160; |
| SOD3 (ng/mL) | {20.64; | {20.84; | {18.80; |
| SOD3 (ng/mg total protein) | {0.165; | {0.158; | {0.160; |
| SOD (U/L) | {2106; | {1602; | {1539; |
| SOD (U/g total protein) | {15.94; | {12.37; | {9.97; |
| SOD (U/mg SODs) | {23.81; | {17.25; | {17.95; |
| Cu,Zn-SOD (U/L) | {604; | {530; | {436; |
| Cu,Zn-SOD (U/g total protein) | {4.88; | {3.98; | {2.72; |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {11.46; | {7.47; | {9.51; |
| Cu,Zn-SOD (% SOD activity) | {29.13; | {25.49; | {29.15; |
| Mn-SOD (U/L) | {1067; | {1004; | {1060; |
| Mn-SOD (U/g total protein) | {9.40; | {8.12; | {6.08; |
| Mn-SOD (U/mg SOD2) | {38.05; | {30.27; | {33.91; |
| TAC (mM UAE) | {0.214; | {0.266; | {0.265; |
| MDA (µmol/L) | {3.82; | {3.86; | {3.99; |
| Cu (µg/L) | {904; | {853; | {988; |
| Zn (µg/L) | {821; | {902; | {874; |
| Zn/Cu | {0.75; | {0.84; | {0.86; |
Values shown as: {1st quartile; median value; 3rd quartile}.
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs927450 (SOD2), in obese individuals.
| Parameter | C/C Genotype ( | T/C Genotype ( | T/T Genotype ( |
|---|---|---|---|
| SOD1 (ng/mL) | {31.89; | {27.15; | {33.01; |
| SOD1 (ng/mg total protein) | {0.309; | {0.215; | {0.274; |
| SOD2 (ng/mL) | {21.80; | {18.70; | {19.69; |
| SOD2 (ng/mg total protein) | {0.185; | {0.151; | {0.151; |
| SOD3 (ng/m) | {28.16; | {20.09; | {26.76; |
| SOD3 (ng/mg total protein) | {0.239; | {0.147; | {0.226; |
| SOD (U/L) | {1697; | {1995; | {1993; |
| SOD (U/g total protein) | {14.62; | {16.55; | {14.98; |
| SOD (U/mg SODs) | {16.34; | {19.41; | {18.60; |
| Cu,Zn-SOD (U/L) | {656; | {610; | {580; |
| Cu,Zn-SOD (U/g total protein) | {5.66; | {5.05; | {4.79; |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {7.76; | {8.07; | {7.09; |
| Cu,Zn-SOD (% SOD activity) | {31.95; | {28.85; | {33.94; |
| Mn-SOD (U/L) | {1134; | {1125; | {1111; |
| Mn-SOD (U/g total protein) | {9.94; | {9.07; | {9.27; |
| Mn-SOD (U/mg SOD2) | {41.91; | {40.40; | {39.70; |
| TAC (mM UAE) | {0.312; | {0.331; | {0.378; |
| MDA (µmol/L) | {5.98; | {4.63; | {6.33; |
| Cu (µg/L) | {900; | {1002; | {927; |
| Zn (µg/L) | {881; | {900; | {788; |
| Zn/Cu | {0.72; | {0.79; | {0.67; |
Values shown as: {1st quartile; median value; 3rd quartile}.
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs2234694 (SOD1), in non-obese individuals.
| Parameter | A/A Genotype ( | A/C Genotype ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | {18.86; | {24.08; | 0.7427 |
| SOD1 (ng/mg total protein) | {0.16; | {0.18; | 0.9782 |
| SOD2 (ng/mL) | {22.32; | {18.80; | 0.2090 |
| SOD2 (ng/mg total protein) | {0.17; | {0.17; | 0.3544 |
|
| {25.51; | {18.38; |
|
|
| {0.18; | {0.14; |
|
| SOD (U/L) | {1711; | {1528; | 0.5649 |
| SOD (U/g total protein) | {13.20; | {12.05; | 0.8268 |
| SOD (U/mg SODs) | {18.33; | {22.80; | 0.3391 |
| Cu,Zn-SOD (U/L) | {532; | {411; | 0.9346 |
| Cu,Zn-SOD (U/g total protein) | {4.23; | {2.86; | 0.9782 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {8.86; | {9.51; | 0.4908 |
| Cu,Zn-SOD (% SOD activity) | {27.92; | {27.24; | 1.0000 |
| Mn-SOD (U/L) | {1004; | {1098; | 0.3495 |
| Mn-SOD (U/g total protein) | {8.03; | {8.14; | 0.5465 |
| Mn-SOD (U/mg SOD2) | {33.37; | {33.91; | 0.6714 |
| TAC (mM UAE) | {0.25; | {0.27; | 0.7635 |
|
| {3.86; | {4.48; |
|
| Cu (µg/L) | {921; | {853; | 0.6027 |
| Zn (µg/L) | {846; | {902; | 0.3942 |
| Zn/Cu | {0.81; | {0.83; | 0.9129 |
| Cd (mg/g Hb) | {1.62; | {1.12; | 0.5027 |
| Cotinine (ng/mL) | {0.00; | {0.00; | 0.5649 |
| Age (years) | {24; | {28; | 0.5649 |
| BMI | {21.36; | {20.68; | 0.7635 |
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. ** significant difference (median values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs2234694 (SOD1), in obese individuals.
| Parameter | A/A Genotype ( | A/C Genotype ( |
|
|---|---|---|---|
|
| {31.85; | {23.06; |
|
|
| {0.27; | {0.16; |
|
|
| {18.70; | {24.01; |
|
|
| {0.15; | {0.20; |
|
| SOD3 (ng/mL) | {23.40; | {26.68; | 0.5095 |
| SOD3 (ng/mg total protein) | {0.18; | {0.19; | 0.9390 |
| SOD (U/L) | {1953; | {1610; | 0.4590 |
| SOD (U/g total protein) | {15.31; | {12.17; | 0.6944 |
| SOD (U/mg SODs) | {18.03; | {20.82; | 0.7895 |
| Cu,Zn-SOD (U/L) | {610; | {390; | 0.7895 |
| Cu,Zn-SOD (U/g total protein) | {5.18; | {3.78; | 0.6713 |
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {7.86; | {8.03; | 0.3195 |
| Cu,Zn-SOD (% SOD activity) | {29.47; | {22.67; | 0.7654 |
| Mn-SOD (U/L) | {1174; | {886; | 0.2477 |
| Mn-SOD (U/g total protein) | {9.48; | {7.14; | 0.5187 |
| Mn-SOD (U/mg SOD2) | {41.91; | {24.17; | 0.1385 |
| TAC (mM UAE) | {0.33; | {0.34; | 0.9390 |
| MDA (µmol/L) | {5.71; | {6.16; | 0.6869 |
| Cu (µg/L) | {945; | {975; | 0.2763 |
| Zn (µg/L) | {890; | {836; | 0.0622 |
| Zn/Cu | {0.82; | {0.72; | 0.0699 |
| Cd (mg/g Hb) | {1.59; | {1.70; | 0.9860 |
| Cotinine (ng/mL) | {0.00; | {0.00; | 0.8423 |
| Age (years) | {38; | {39; | 0.7540 |
| BMI | {31.42; | {31.57; | 0.7090 |
Values shown as: mean value ± standard deviation and {1st quartile; median value; 3rd quartile}. **—significant difference (median values).
Values of selected pro- and antioxidative parameters, and concentration of selected metals, in context of genotypic variability of rs4880 (SOD2), in non-obese individuals.
| Parameter | C/C or C/T Genotype ( | T/T Genotype ( |
|
|---|---|---|---|
| SOD1 (ng/mL) | {19.78; | {16.72; | 0.5478 |
| SOD1 (ng/mg total protein) | {0.17; | {0.13; | 0.3187 |
| SOD2 (ng/mL) | {22.12; | {20.19; | 0.7105 |
| SOD2 (ng/mg total protein) | {0.17; | {0.14; | 0.5300 |
| SOD3 (ng/mL) | {25.46; | {15.70; | 0.0663 |
|
| {0.18; | {0.11; |
|
|
| {1865; | {1411; |
|
|
| {13.39; | {9.52; |
|
| SOD (U/mg SODs) | {19.32; | {17.20; | 0.4338 |
|
| {532; | {411; |
|
|
| {4.23; | {2.68; |
|
| Cu,Zn-SOD (U/mg SOD1+SOD3) | {10.36; | {8.82; | 0.3618 |
| Cu,Zn-SOD (% SOD activity) | {29.80; | {27.24; | 0.5173 |
| Mn-SOD (U/L) | {1033; | {609; | 0.0539 |
|
| {8.81; | {5.43; |
|
| Mn-SOD (U/mg SOD2) | {35.97; | {19.80; | 0.3618 |
| TAC (mM UAE) | {0.25; | {0.22; | 0.4178 |
| MDA (µmol/L) | {3.86; | {4.05; | 0.3915 |
| Cu (µg/L) | {865; | {989; | 0.2753 |
| Zn (µg/L) | {853; | {895; | 0.3540 |
| Zn/Cu | {0.81; | {0.88; | 0.9632 |
| Cd (mg/g Hb) | {1.64; | {1.03; | 0.2266 |
| Cotinine (ng/mL) | {0.00; | {0.00; | 0.3302 |
| Age (years) | {25; | {27; | 0.4178 |
| BMI | {21.15; | {23.32; | 0.0673 |
Values shown as: {1st quartile; median value; 3rd quartile}. **—significant difference (median values).
The values of selected carbohydrate metabolism and insulin resistance parameters, in context of genotypic variability of rs2234694 (SOD1) and rs4880 (SOD2).
|
| |||
|
|
|
|
|
| Glucose (mmol/L) | {4.94; | {4.67; | 0.2502 |
|
| {10.00; | {7.80; |
|
|
| {2.25; | {1.62; |
|
|
| |||
|
|
|
|
|
|
| {4.50; | {4.72; |
|
|
| {4.70; | {6.50; |
|
|
| {0.97; | {1.28; |
|
Values shown as: {1st quartile; median value; 3rd quartile}. ** significant difference (median values).
Values of selected basic clinical assays: lipidogram, CRP, glucose, insulin concentration and HOMA-IR index, in context of genotypic variability of rs2234694 (SOD1) and rs4880 (SOD2).
|
| |||
| Parameter |
|
|
|
| TChol (mg/dL) | {175; | {184; | 0.2533 |
| TG (mg/dL) | {70; | {60; | 0.9889 |
| HDL-Chol (mg/dL) | {48; | {47; | 0.6443 |
| LDL-Chol (mg/dL) | {99; | {98; | 0.2909 |
| CRP (mg/L) | {0.33; | {0.19; | 0.7220 |
| Glucose (mmol/L) | {4.50; | {4.28; | 0.7058 |
| Insulin (mU/L) | {4.90; | {4.70; | 0.6046 |
| HOMA-IR | {1.02; | {0.91; | 0.6243 |
|
| |||
|
|
|
|
|
| TChol (mg/dL) | {168; | {166; | 0.8540 |
| TG (mg/dL) | {84; | {120; | 0.4158 |
| HDL-Chol (mg/dL) | {43; | {42; | 0.9413 |
| LDL-Chol (mg/dL) | {98; | {96; | 0.8829 |
| CRP (mg/L) | {1.03; | {1.11; | 0.6082 |
| Glucose (mmol/L) | {4.94; | {4.67; | 0.2502 |
|
| {10.00; | {7.80; |
|
|
| {2.25; | {1.62; |
|
|
| |||
|
|
|
|
|
| TChol (mg/dL) | {179; | {178; | 0.8041 |
| TG (mg/dL) | {67; | {75; | 0.3249 |
| HDL-Chol (mg/dL) | {48; | {46; | 0.6449 |
| LDL-Chol (mg/dL) | {98; | {99; | 0.9906 |
| CRP (mg/L) | {0.20; | {0.41; | 0.2008 |
|
| {4.50; | {4.72; |
|
|
| {4.70; | {6.50; |
|
|
| {0.97; | {1.28; |
|
Values shown as: {1st quartile; median value; 3rd quartile}. **—significant difference (median values). Please note, that this table is supplementary to Table 12.
The structure and characteristics of groups: control and obese.
|
| ||||
|
|
|
| ||
| Total count | 50 | 44 | ||
| Sex | M: 21 | F: 29 | M: 24 | F: 20 |
| Exposed to cigarette smoke | NO: 41 | YES: 9 | NO: 27 | YES: 17 |
| Sex (not exposed) | M: 17 | F: 24 | M: 18 | F: 9 |
| Sex (exposed) | M: 4 | F: 5 | M: 6 | F:11 |
|
| ||||
|
|
|
|
| |
|
| {25; | {37; |
| |
| TChol (mg/dL) | {179; | {168; | 0.5809 | |
|
| {67; | {87; |
| |
|
| {48; | {43; |
| |
| LDL-Chol (mg/dL) | {99; | {98; | 0.7743 | |
|
| {0.33; | {1.11; |
| |
|
| {4.50; | {4.89; |
| |
|
| {4.90; | {9.50; |
| |
|
| {21.30; | {31.51; |
| |
|
| {1.00; | {1.85; |
| |
Values shown as: {1st quartile; median value; 3rd quartile}. ** significant difference (median values).
The characteristics of primers used for genotyping (method: PCR-RFLP).
| SNP (Gene) | Primers. 5′–3′ Sequence (Base Pair Count) | Melting T (°C) | Annealing T (°C) | GC Content (%) |
|---|---|---|---|---|
| rs2234694 ( | Forward: CTATCCAGAAAACACGGTGGGCC(23) | 64.2 | 55.0 | 70.6 |
| Reverse: TCTATATTCAATAAATGCTACAAAACC(27) | 55.9 | 50.0 | ||
| rs5746105 ( | Forward: GAGCTCGGTTGATAAAACCAGGG(23) | 62.4 | 58.0 | 52.2 |
| Reverse: ACTCAACAAATTTCATAACCCCGA(24) | 57.6 | 37.5 | ||
| rs4880 ( | Forward: GCCTGCGTAGACGGTCC(17) | 60.0 | 57.0 | 70.6 |
| Reverse: TCGGTGACGTTCAGGTTGTT(20) | 57.3 | 50.0 | ||
| rs927450 ( | Forward: CCTGGAAACCTACATTAAGACTTTG(25) | 57.9 | 57.0 | 40.0 |
| Reverse: CTCTGGGGCCTACACTCTTT(20) | 58.7 | 55.0 | ||
| rs8192287 ( | Forward: TTATGAGTGCGGCTAGTGCC(20) | 60.2 | 57.0 | 55.0 |
| Reverse: TACTCGCCCAGTGACAACAC(20) | 60.0 | 55.0 |
Restriction conditions (PCR-RFLP method genotyping).
| SNP (Gene) | Amplicon Length | Restrictase Restriction Site | Restriction Conditions | Genotype Restriction Fragments |
|---|---|---|---|---|
| rs2234694 ( | 278 bp | HhaI, Thermo Fisher Scientific, cat. no. ER1851 | 37.0 °C, 10 U HhaI, 1.5 h | A/A: 278 bp |
| A/C: 278 bp, 207 bp, 71 bp | ||||
| C/C: 207 bp, 71 bp | ||||
| rs5746105 ( | 259 bp | TasI (Tsp509I), Thermo Fisher Scientific, cat. no. ER1351 | 65.0 °C, 3 U TasI, 2.5 h | C/C: 231 bp, 16 bp, 12 bp |
| C/T: 231 bp, 110 bp, 121 bp, 16 bp, 12 bp | ||||
| T/T: 110 bp, 121 bp, 16 bp, 12 bp | ||||
| rs4880 ( | 231 bp | BsaWI, New England Biolabs, cat. no. R0567S | 60.0 °C, 3 U BsaWI, 2.5 h | C/C: 231 bp |
| C/T: 231 bp, 81 bp, 150 bp | ||||
| T/T: 81 bp, 150 bp | ||||
| rs927450 ( | 83 bp | BstUI, Thermo Fisher Scientific, cat. no. ER0921 | 37.0 °C, 3 U BstUI, 2.5 h | T/T: 81 bp |
| T/C: 81 bp, 35 bp, 48 bp | ||||
| C/C: 35 bp, 48 bp | ||||
| rs8192287 ( | 47 bp | MaeIII, Sigma-Aldrich. cat. no. 10822230001 | 55.0 °C, 3 U MaeIII, 2.5 h | T/T: 47 bp |
| T/G: 47 bp, 32 bp. 15 bp | ||||
| G/G: 32 bp, 15 bp |
Figure A1Examples of electropherograms used in the genotyping of: rs2234694 (SOD1) (a), rs5746105 (SOD2) (b), rs4880 (SOD2) (c).
Figure A2Examples of electropherograms used in the genotyping of: (SOD2) (a), rs8192287 (SOD3) (b).