Literature DB >> 32675376

CRISPR-CasΦ from huge phages is a hypercompact genome editor.

Patrick Pausch1,2, Basem Al-Shayeb1,3, Ezra Bisom-Rapp4, Connor A Tsuchida1,5, Zheng Li6, Brady F Cress1,2, Gavin J Knott1,2,7, Steven E Jacobsen6,8, Jillian F Banfield1,9, Jennifer A Doudna10,2,8,11,12,13.   

Abstract

CRISPR-Cas systems are found widely in prokaryotes, where they provide adaptive immunity against virus infection and plasmid transformation. We describe a minimal functional CRISPR-Cas system, comprising a single ~70-kilodalton protein, CasΦ, and a CRISPR array, encoded exclusively in the genomes of huge bacteriophages. CasΦ uses a single active site for both CRISPR RNA (crRNA) processing and crRNA-guided DNA cutting to target foreign nucleic acids. This hypercompact system is active in vitro and in human and plant cells with expanded target recognition capabilities relative to other CRISPR-Cas proteins. Useful for genome editing and DNA detection but with a molecular weight half that of Cas9 and Cas12a genome-editing enzymes, CasΦ offers advantages for cellular delivery that expand the genome editing toolbox.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32675376      PMCID: PMC8207990          DOI: 10.1126/science.abb1400

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

Review 1.  Streamlining and simplification of microbial genome architecture.

Authors:  Michael Lynch
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

2.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

3.  Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis.

Authors:  Sang-Dong Yoo; Young-Hee Cho; Jen Sheen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 4.  Rates of evolutionary change in viruses: patterns and determinants.

Authors:  Siobain Duffy; Laura A Shackelton; Edward C Holmes
Journal:  Nat Rev Genet       Date:  2008-03-04       Impact factor: 53.242

5.  Functionally diverse type V CRISPR-Cas systems.

Authors:  Winston X Yan; Pratyusha Hunnewell; Lauren E Alfonse; Jason M Carte; Elise Keston-Smith; Shanmugapriya Sothiselvam; Anthony J Garrity; Shaorong Chong; Kira S Makarova; Eugene V Koonin; David R Cheng; David A Scott
Journal:  Science       Date:  2018-12-06       Impact factor: 47.728

6.  Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a.

Authors:  Daan C Swarts; John van der Oost; Martin Jinek
Journal:  Mol Cell       Date:  2017-04-20       Impact factor: 17.970

7.  Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA.

Authors:  Christopher D Richardson; Graham J Ray; Mark A DeWitt; Gemma L Curie; Jacob E Corn
Journal:  Nat Biotechnol       Date:  2016-01-20       Impact factor: 54.908

8.  Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.

Authors:  Lucas B Harrington; David Burstein; Janice S Chen; David Paez-Espino; Enbo Ma; Isaac P Witte; Joshua C Cofsky; Nikos C Kyrpides; Jillian F Banfield; Jennifer A Doudna
Journal:  Science       Date:  2018-10-18       Impact factor: 47.728

Review 9.  CRISPR-Cas guides the future of genetic engineering.

Authors:  Gavin J Knott; Jennifer A Doudna
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

10.  Repeated, selection-driven genome reduction of accessory genes in experimental populations.

Authors:  Ming-Chun Lee; Christopher J Marx
Journal:  PLoS Genet       Date:  2012-05-10       Impact factor: 5.917

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  95 in total

Review 1.  Application of CRISPR/Cas System in the Metabolic Engineering of Small Molecules.

Authors:  Rajveer Singh; Shivani Chandel; Arijit Ghosh; Dhritiman Dey; Rudra Chakravarti; Syamal Roy; V Ravichandiran; Dipanjan Ghosh
Journal:  Mol Biotechnol       Date:  2021-03-27       Impact factor: 2.695

2.  CRISPR/Cas9 to Silence Long Non-Coding RNAs.

Authors:  Ingrid Arctander Rosenlund; George A Calin; Mihnea P Dragomir; Erik Knutsen
Journal:  Methods Mol Biol       Date:  2021

3.  Expanding the horizons of genome editing in the fruit fly with Cas12a.

Authors:  Ben Ewen-Campen; Norbert Perrimon
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-03       Impact factor: 11.205

4.  DNA interference states of the hypercompact CRISPR-CasΦ effector.

Authors:  Patrick Pausch; Katarzyna M Soczek; Dominik A Herbst; Connor A Tsuchida; Basem Al-Shayeb; Jillian F Banfield; Eva Nogales; Jennifer A Doudna
Journal:  Nat Struct Mol Biol       Date:  2021-08-11       Impact factor: 15.369

Review 5.  Genome-editing approaches and applications: a brief review on CRISPR technology and its role in cancer.

Authors:  Narmadhaa Siva; Sonal Gupta; Ayam Gupta; Jayendra Nath Shukla; Babita Malik; Nidhi Shukla
Journal:  3 Biotech       Date:  2021-02-26       Impact factor: 2.406

6.  Programmable RNA editing with compact CRISPR-Cas13 systems from uncultivated microbes.

Authors:  Chunlong Xu; Yingsi Zhou; Qingquan Xiao; Bingbing He; Guannan Geng; Zikang Wang; Birong Cao; Xue Dong; Weiya Bai; Yifan Wang; Xiang Wang; Dongming Zhou; Tanglong Yuan; Xiaona Huo; Jinsheng Lai; Hui Yang
Journal:  Nat Methods       Date:  2021-05-03       Impact factor: 28.547

Review 7.  Using CRISPR to understand and manipulate gene regulation.

Authors:  Ersin Akinci; Marisa C Hamilton; Benyapa Khowpinitchai; Richard I Sherwood
Journal:  Development       Date:  2021-04-29       Impact factor: 6.868

Review 8.  Single-Base Resolution: Increasing the Specificity of the CRISPR-Cas System in Gene Editing.

Authors:  Roy Rabinowitz; Daniel Offen
Journal:  Mol Ther       Date:  2020-11-26       Impact factor: 11.454

Review 9.  Patient iPSC-derived retinal organoids: Observable retinal diseases in-a-dish.

Authors:  Xiao-Hui Zhang; Zi-Bing Jin
Journal:  Histol Histopathol       Date:  2021-01-22       Impact factor: 2.303

Review 10.  Interactions between bacterial and phage communities in natural environments.

Authors:  Anne Chevallereau; Benoît J Pons; Stineke van Houte; Edze R Westra
Journal:  Nat Rev Microbiol       Date:  2021-08-09       Impact factor: 60.633

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