Literature DB >> 32623267

Clinical, molecular, and epidemiological characterization of the SARS-CoV-2 virus and the Coronavirus Disease 2019 (COVID-19), a comprehensive literature review.

Esteban Ortiz-Prado1, Katherine Simbaña-Rivera2, Lenin Gómez-Barreno3, Mario Rubio-Neira4, Linda P Guaman5, Nikolaos C Kyriakidis6, Claire Muslin7, Ana María Gómez Jaramillo8, Carlos Barba-Ostria9, Doménica Cevallos-Robalino10, Hugo Sanches-SanMiguel11, Luis Unigarro12, Rasa Zalakeviciute13, Naomi Gadian14, Andrés López-Cortés15.   

Abstract

Coronaviruses are an extensive family of viruses that can cause disease in both animals and humans. The current classification of coronaviruses recognizes 39 species in 27 subgenera that belong to the family Coronaviridae. From those, at least 7 coronaviruses are known to cause respiratory infections in humans. Four of these viruses can cause common cold-like symptoms. Those that infect animals can evolve and become infectious to humans. Three recent examples of these viral jumps include SARS CoV, MERS-CoV and SARS CoV-2 virus. They are responsible for causing severe acute respiratory syndrome (SARS), Middle East respiratory syndrome (MERS) and the most recently discovered coronavirus disease during 2019 (COVID-19). COVID-19, a respiratory disease caused by the SARS-CoV-2 virus, was declared a pandemic by the World Health Organization (WHO) on 11 March 2020. The rapid spread of the disease has taken the scientific and medical community by surprise. Latest figures from 20 May 2020 show more than 5 million people had been infected with the virus, causing more than 330,000 deaths in over 210 countries worldwide. The large amount of information received daily relating to COVID-19 is so abundant and dynamic that medical staff, health authorities, academics and the media are not able to keep up with this new pandemic. In order to offer a clear insight of the extensive literature available, we have conducted a comprehensive literature review of the SARS CoV-2 Virus and the Coronavirus Diseases 2019 (COVID-19).
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  COVID-19; Coronavirus; Pandemic; Review; SARS-CoV-2

Mesh:

Year:  2020        PMID: 32623267      PMCID: PMC7260568          DOI: 10.1016/j.diagmicrobio.2020.115094

Source DB:  PubMed          Journal:  Diagn Microbiol Infect Dis        ISSN: 0732-8893            Impact factor:   2.803


  209 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Hand-Hygiene Mitigation Strategies Against Global Disease Spreading through the Air Transportation Network.

Authors:  Christos Nicolaides; Demetris Avraam; Luis Cueto-Felgueroso; Marta C González; Ruben Juanes
Journal:  Risk Anal       Date:  2019-12-23       Impact factor: 4.000

Review 3.  Coronavirus pathogenesis and the emerging pathogen severe acute respiratory syndrome coronavirus.

Authors:  Susan R Weiss; Sonia Navas-Martin
Journal:  Microbiol Mol Biol Rev       Date:  2005-12       Impact factor: 11.056

4.  A promoter-level mammalian expression atlas.

Authors:  Alistair R R Forrest; Hideya Kawaji; Michael Rehli; J Kenneth Baillie; Michiel J L de Hoon; Vanja Haberle; Timo Lassmann; Ivan V Kulakovskiy; Marina Lizio; Masayoshi Itoh; Robin Andersson; Christopher J Mungall; Terrence F Meehan; Sebastian Schmeier; Nicolas Bertin; Mette Jørgensen; Emmanuel Dimont; Erik Arner; Christian Schmidl; Ulf Schaefer; Yulia A Medvedeva; Charles Plessy; Morana Vitezic; Jessica Severin; Colin A Semple; Yuri Ishizu; Robert S Young; Margherita Francescatto; Intikhab Alam; Davide Albanese; Gabriel M Altschuler; Takahiro Arakawa; John A C Archer; Peter Arner; Magda Babina; Sarah Rennie; Piotr J Balwierz; Anthony G Beckhouse; Swati Pradhan-Bhatt; Judith A Blake; Antje Blumenthal; Beatrice Bodega; Alessandro Bonetti; James Briggs; Frank Brombacher; A Maxwell Burroughs; Andrea Califano; Carlo V Cannistraci; Daniel Carbajo; Yun Chen; Marco Chierici; Yari Ciani; Hans C Clevers; Emiliano Dalla; Carrie A Davis; Michael Detmar; Alexander D Diehl; Taeko Dohi; Finn Drabløs; Albert S B Edge; Matthias Edinger; Karl Ekwall; Mitsuhiro Endoh; Hideki Enomoto; Michela Fagiolini; Lynsey Fairbairn; Hai Fang; Mary C Farach-Carson; Geoffrey J Faulkner; Alexander V Favorov; Malcolm E Fisher; Martin C Frith; Rie Fujita; Shiro Fukuda; Cesare Furlanello; Masaaki Furino; Jun-ichi Furusawa; Teunis B Geijtenbeek; Andrew P Gibson; Thomas Gingeras; Daniel Goldowitz; Julian Gough; Sven Guhl; Reto Guler; Stefano Gustincich; Thomas J Ha; Masahide Hamaguchi; Mitsuko Hara; Matthias Harbers; Jayson Harshbarger; Akira Hasegawa; Yuki Hasegawa; Takehiro Hashimoto; Meenhard Herlyn; Kelly J Hitchens; Shannan J Ho Sui; Oliver M Hofmann; Ilka Hoof; Furni Hori; Lukasz Huminiecki; Kei Iida; Tomokatsu Ikawa; Boris R Jankovic; Hui Jia; Anagha Joshi; Giuseppe Jurman; Bogumil Kaczkowski; Chieko Kai; Kaoru Kaida; Ai Kaiho; Kazuhiro Kajiyama; Mutsumi Kanamori-Katayama; Artem S Kasianov; Takeya Kasukawa; Shintaro Katayama; Sachi Kato; Shuji Kawaguchi; Hiroshi Kawamoto; Yuki I Kawamura; Tsugumi Kawashima; Judith S Kempfle; Tony J Kenna; Juha Kere; Levon M Khachigian; Toshio Kitamura; S Peter Klinken; Alan J Knox; Miki Kojima; Soichi Kojima; Naoto Kondo; Haruhiko Koseki; Shigeo Koyasu; Sarah Krampitz; Atsutaka Kubosaki; Andrew T Kwon; Jeroen F J Laros; Weonju Lee; Andreas Lennartsson; Kang Li; Berit Lilje; Leonard Lipovich; Alan Mackay-Sim; Ri-ichiroh Manabe; Jessica C Mar; Benoit Marchand; Anthony Mathelier; Niklas Mejhert; Alison Meynert; Yosuke Mizuno; David A de Lima Morais; Hiromasa Morikawa; Mitsuru Morimoto; Kazuyo Moro; Efthymios Motakis; Hozumi Motohashi; Christine L Mummery; Mitsuyoshi Murata; Sayaka Nagao-Sato; Yutaka Nakachi; Fumio Nakahara; Toshiyuki Nakamura; Yukio Nakamura; Kenichi Nakazato; Erik van Nimwegen; Noriko Ninomiya; Hiromi Nishiyori; Shohei Noma; Shohei Noma; Tadasuke Noazaki; Soichi Ogishima; Naganari Ohkura; Hiroko Ohimiya; Hiroshi Ohno; Mitsuhiro Ohshima; Mariko Okada-Hatakeyama; Yasushi Okazaki; Valerio Orlando; Dmitry A Ovchinnikov; Arnab Pain; Robert Passier; Margaret Patrikakis; Helena Persson; Silvano Piazza; James G D Prendergast; Owen J L Rackham; Jordan A Ramilowski; Mamoon Rashid; Timothy Ravasi; Patrizia Rizzu; Marco Roncador; Sugata Roy; Morten B Rye; Eri Saijyo; Antti Sajantila; Akiko Saka; Shimon Sakaguchi; Mizuho Sakai; Hiroki Sato; Suzana Savvi; Alka Saxena; Claudio Schneider; Erik A Schultes; Gundula G Schulze-Tanzil; Anita Schwegmann; Thierry Sengstag; Guojun Sheng; Hisashi Shimoji; Yishai Shimoni; Jay W Shin; Christophe Simon; Daisuke Sugiyama; Takaai Sugiyama; Masanori Suzuki; Naoko Suzuki; Rolf K Swoboda; Peter A C 't Hoen; Michihira Tagami; Naoko Takahashi; Jun Takai; Hiroshi Tanaka; Hideki Tatsukawa; Zuotian Tatum; Mark Thompson; Hiroo Toyodo; Tetsuro Toyoda; Elvind Valen; Marc van de Wetering; Linda M van den Berg; Roberto Verado; Dipti Vijayan; Ilya E Vorontsov; Wyeth W Wasserman; Shoko Watanabe; Christine A Wells; Louise N Winteringham; Ernst Wolvetang; Emily J Wood; Yoko Yamaguchi; Masayuki Yamamoto; Misako Yoneda; Yohei Yonekura; Shigehiro Yoshida; Susan E Zabierowski; Peter G Zhang; Xiaobei Zhao; Silvia Zucchelli; Kim M Summers; Harukazu Suzuki; Carsten O Daub; Jun Kawai; Peter Heutink; Winston Hide; Tom C Freeman; Boris Lenhard; Vladimir B Bajic; Martin S Taylor; Vsevolod J Makeev; Albin Sandelin; David A Hume; Piero Carninci; Yoshihide Hayashizaki
Journal:  Nature       Date:  2014-03-27       Impact factor: 49.962

Review 5.  Interferon-stimulated genes and their antiviral effector functions.

Authors:  John W Schoggins; Charles M Rice
Journal:  Curr Opin Virol       Date:  2011-12       Impact factor: 7.090

6.  Epidemiology of seasonal influenza in the Middle East and North Africa regions, 2010-2016: Circulating influenza A and B viruses and spatial timing of epidemics.

Authors:  Saverio Caini; Clotilde El-Guerche Séblain; Meral A Ciblak; John Paget
Journal:  Influenza Other Respir Viruses       Date:  2018-02-19       Impact factor: 4.380

7.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

8.  A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.

Authors:  Jasper Fuk-Woo Chan; Shuofeng Yuan; Kin-Hang Kok; Kelvin Kai-Wang To; Hin Chu; Jin Yang; Fanfan Xing; Jieling Liu; Cyril Chik-Yan Yip; Rosana Wing-Shan Poon; Hoi-Wah Tsoi; Simon Kam-Fai Lo; Kwok-Hung Chan; Vincent Kwok-Man Poon; Wan-Mui Chan; Jonathan Daniel Ip; Jian-Piao Cai; Vincent Chi-Chung Cheng; Honglin Chen; Christopher Kim-Ming Hui; Kwok-Yung Yuen
Journal:  Lancet       Date:  2020-01-24       Impact factor: 79.321

Review 9.  Viral Innate Immune Evasion and the Pathogenesis of Emerging RNA Virus Infections.

Authors:  Tessa Nelemans; Marjolein Kikkert
Journal:  Viruses       Date:  2019-10-18       Impact factor: 5.048

10.  Association of human leukocyte antigen class II alleles with severe Middle East respiratory syndrome-coronavirus infection.

Authors:  Ali H Hajeer; Hanan Balkhy; Sameera Johani; Mohammed Z Yousef; Yaseen Arabi
Journal:  Ann Thorac Med       Date:  2016 Jul-Sep       Impact factor: 2.219

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  96 in total

1.  Study on clinical characteristics of 173 cases of COVID-19 and effect of glucocorticoid on nucleic acid negative conversion.

Authors:  Enqing Fu; Ruina Ma; Linxu Wang; Han Fu; Wangping Li
Journal:  Am J Transl Res       Date:  2021-05-15       Impact factor: 4.060

Review 2.  Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection.

Authors:  Seyed Hamid Safiabadi Tali; Jason J LeBlanc; Zubi Sadiq; Oyejide Damilola Oyewunmi; Carolina Camargo; Bahareh Nikpour; Narges Armanfard; Selena M Sagan; Sana Jahanshahi-Anbuhi
Journal:  Clin Microbiol Rev       Date:  2021-05-12       Impact factor: 26.132

3.  Clinical frailty score as an independent predictor of outcome in COVID-19 hospitalised patients.

Authors:  Gouri Koduri; Sriya Gokaraju; Maria Darda; Vinod Warrier; Irina Duta; Fiona Hayes; Iman El Sayed; Yasser Noeman-Ahmed
Journal:  Eur Geriatr Med       Date:  2021-06-04       Impact factor: 3.269

4.  Authors' response.

Authors:  Manindra Agrawal; Madhuri Kanitkar; M Vidyasagar
Journal:  Indian J Med Res       Date:  2021 Jan & Feb       Impact factor: 2.375

Review 5.  The crucial contribution of the universities on the SARS-CoV-2 surveillance in Ecuador: Lessons for developing countries.

Authors:  Daniela Santander-Gordon; Gabriel A Iturralde; Byron Freire-Paspuel; Marlon S Zambrano-Mila; Diana C Morales; Paolo A Vallejo-Janeta; Barbara Coronel; Heberson Galvis; Tatiana Jaramillo; Christian D Bilvao; Maria B Rodriguez-Paredes; Sebastian Rodriguez-Pazmiño; Juan C Laglaguano; Henry Herrera; Ana Maria Tito; Esteban Ortiz-Prado; Ismar A Rivera-Olivero; Aquiles R Henriquez-Trujillo; Tannya Lozada; Miguel Angel Garcia-Bereguiain
Journal:  One Health       Date:  2021-05-25

6.  Clinical course and outcomes of COVID-19 in hematopoietic cell transplant patients, a regional report from the Middle East.

Authors:  Riad El Fakih; Alfadil Haroon; Feras Alfraih; Murtadha K Al-Khabori; Mohsen Alzahrani; Ahmad Alhuraiji; Abdulaziz Hamadah; Naif I AlJohani; Bader Alahmari; Mohammed F Essa; Ibraheem H Motabi; Imran K Tailor; Reem S Almaghrabi; Khalil Al-Farsi; Ibraheem Abosoudah; Mouhab Ayas; Tusneem A Elhassan; Ashraf M Suhebeh; Syed Osman Ahmed; Saud Alhayli; Panayotis Kaloyannidis; Ahmad Alsaeed; Khalid Al Anezi; Sameer Alamoudi; Moussab Damlaj; Hani Al Hashmi; Mahmoud Aljurf
Journal:  Bone Marrow Transplant       Date:  2021-04-27       Impact factor: 5.483

Review 7.  Back to basics in COVID-19: Antigens and antibodies-Completing the puzzle.

Authors:  Monica Neagu; Daniela Calina; Anca Oana Docea; Carolina Constantin; Tommaso Filippini; Marco Vinceti; Nikolaos Drakoulis; Konstantinos Poulas; Taxiarchis Konstantinos Nikolouzakis; Demetrios A Spandidos; Aristidis Tsatsakis
Journal:  J Cell Mol Med       Date:  2021-03-18       Impact factor: 5.310

8.  Surge of severe acute respiratory syndrome coronavirus 2 infections linked to single introduction of a virus strain in Myanmar, 2020.

Authors:  Myat Htut Nyunt; Hnin Ohnmar Soe; Kay Thi Aye; Wah Wah Aung; Yi Yi Kyaw; Aung Kyaw Kyaw; Theingi Win Myat; Aung Zaw Latt; Min Min Win; Aye Aye Win; Yin Min Htun; Khaing Mar Zaw; Phyu Win Ei; Kyaw Thu Hein; Lai Lai San; Nan Aye Thida Oo; Htin Lin; Nan Cho Nwe Mon; Khin Than Yee; Khin Lapyae Htun; Lynn Pa Pa Aye; Yamin Ko Ko; Thitsar Htet Htet Htoo; Kham Mo Aung; Hnin Azili; Soe Soe Han; Ni Ni Zaw; Su Mon Win; Wai Myat Thwe; Thin Thin Aye; Myat Su Hlaing; Wai Yan Minn; Pyae Phyo Thu; Hlaing Myat Thu; Zaw Than Htun
Journal:  Sci Rep       Date:  2021-05-13       Impact factor: 4.379

Review 9.  Risk of COVID-19 in Chagas Disease Patients: What Happen with Cardiac Affectations?

Authors:  Alejandro Diaz-Hernandez; Maria Cristina Gonzalez-Vazquez; Minerva Arce-Fonseca; Olivia Rodriguez-Morales; Maria Lilia Cedilllo-Ramirez; Alejandro Carabarin-Lima
Journal:  Biology (Basel)       Date:  2021-05-06

10.  Eosinophils and Chronic Respiratory Diseases in Hospitalized COVID-19 Patients.

Authors:  Marcela Valverde-Monge; José A Cañas; Blanca Barroso; Diana Betancor; Laura Ortega-Martin; Alicia Gómez-López; María Jesús Rodríguez-Nieto; Ignacio Mahíllo-Fernández; Joaquín Sastre; Victoria Del Pozo
Journal:  Front Immunol       Date:  2021-06-02       Impact factor: 7.561

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