Literature DB >> 33980687

Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection.

Seyed Hamid Safiabadi Tali1,2, Jason J LeBlanc3,4,5,6, Zubi Sadiq1, Oyejide Damilola Oyewunmi1, Carolina Camargo7, Bahareh Nikpour8, Narges Armanfard8,9, Selena M Sagan7,10, Sana Jahanshahi-Anbuhi11.   

Abstract

The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory disease coronavirus 2 (SARS-CoV-2), has led to millions of confirmed cases and deaths worldwide. Efficient diagnostic tools are in high demand, as rapid and large-scale testing plays a pivotal role in patient management and decelerating disease spread. This paper reviews current technologies used to detect SARS-CoV-2 in clinical laboratories as well as advances made for molecular, antigen-based, and immunological point-of-care testing, including recent developments in sensor and biosensor devices. The importance of the timing and type of specimen collection is discussed, along with factors such as disease prevalence, setting, and methods. Details of the mechanisms of action of the various methodologies are presented, along with their application span and known performance characteristics. Diagnostic imaging techniques and biomarkers are also covered, with an emphasis on their use for assessing COVID-19 or monitoring disease severity or complications. While the SARS-CoV-2 literature is rapidly evolving, this review highlights topics of interest that have occurred during the pandemic and the lessons learned throughout. Exploring a broad armamentarium of techniques for detecting SARS-CoV-2 will ensure continued diagnostic support for clinicians, public health, and infection prevention and control for this pandemic and provide advice for future pandemic preparedness.
Copyright © 2021 American Society for Microbiology.

Entities:  

Keywords:  2019-nCoV; COVID-19; NAAT; PCR; SARS-CoV-2; antigen; biomarkers; coronavirus; next-generation sequencing; serology

Mesh:

Year:  2021        PMID: 33980687      PMCID: PMC8142517          DOI: 10.1128/CMR.00228-20

Source DB:  PubMed          Journal:  Clin Microbiol Rev        ISSN: 0893-8512            Impact factor:   26.132


  511 in total

Review 1.  Emerging technologies for the clinical microbiology laboratory.

Authors:  Blake W Buchan; Nathan A Ledeboer
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

2.  Potential preanalytical and analytical vulnerabilities in the laboratory diagnosis of coronavirus disease 2019 (COVID-19).

Authors:  Giuseppe Lippi; Ana-Maria Simundic; Mario Plebani
Journal:  Clin Chem Lab Med       Date:  2020-06-25       Impact factor: 3.694

3.  Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.

Authors:  Motoki Goto; Eiichi Honda; Atsuo Ogura; Akio Nomoto; Ken-Ichi Hanaki
Journal:  Biotechniques       Date:  2009-03       Impact factor: 1.993

Review 4.  SARS-CoV-2 from faeces to wastewater treatment: What do we know? A review.

Authors:  Paola Foladori; Francesca Cutrupi; Nicola Segata; Serena Manara; Federica Pinto; Francesca Malpei; Laura Bruni; Giuseppina La Rosa
Journal:  Sci Total Environ       Date:  2020-06-24       Impact factor: 7.963

5.  Novel rapid identification of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) by real-time RT-PCR using BD Max Open System in Taiwan.

Authors:  Cherng-Lih Perng; Ming-Jr Jian; Chih-Kai Chang; Jung-Chung Lin; Kuo-Ming Yeh; Chien-Wen Chen; Sheng-Kang Chiu; Hsing-Yi Chung; Yi-Hui Wang; Shu-Jung Liao; Shih-Yi Li; Shan-Shan Hsieh; Shih-Hung Tsai; Feng-Yee Chang; Hung-Sheng Shang
Journal:  PeerJ       Date:  2020-06-17       Impact factor: 2.984

6.  Pharynx gargle samples are suitable for SARS-CoV-2 diagnostic use and save personal protective equipment and swabs.

Authors:  Monika Malecki; Jessica Lüsebrink; Stefanie Teves; Andreas F Wendel
Journal:  Infect Control Hosp Epidemiol       Date:  2020-05-11       Impact factor: 3.254

7.  Comparison of the Panther Fusion and a laboratory-developed test targeting the envelope gene for detection of SARS-CoV-2.

Authors:  Catherine A Hogan; Malaya K Sahoo; ChunHong Huang; Natasha Garamani; Bryan Stevens; James Zehnder; Benjamin A Pinsky
Journal:  J Clin Virol       Date:  2020-04-24       Impact factor: 3.168

8.  A human circulating immune cell landscape in aging and COVID-19.

Authors:  Yingfeng Zheng; Xiuxing Liu; Wenqing Le; Lihui Xie; He Li; Wen Wen; Si Wang; Hongyang Wang; Guang-Hui Liu; Shuai Ma; Zhaohao Huang; Jinguo Ye; Wen Shi; Yanxia Ye; Zunpeng Liu; Moshi Song; Weiqi Zhang; Jing-Dong J Han; Juan Carlos Izpisua Belmonte; Chuanle Xiao; Jing Qu; Wenru Su
Journal:  Protein Cell       Date:  2020-08-11       Impact factor: 14.870

9.  Antibody Responses to SARS-CoV-2 in Patients With Novel Coronavirus Disease 2019.

Authors:  Juanjuan Zhao; Quan Yuan; Haiyan Wang; Wei Liu; Xuejiao Liao; Yingying Su; Xin Wang; Jing Yuan; Tingdong Li; Jinxiu Li; Shen Qian; Congming Hong; Fuxiang Wang; Yingxia Liu; Zhaoqin Wang; Qing He; Zhiyong Li; Bin He; Tianying Zhang; Yang Fu; Shengxiang Ge; Lei Liu; Jun Zhang; Ningshao Xia; Zheng Zhang
Journal:  Clin Infect Dis       Date:  2020-11-19       Impact factor: 9.079

Review 10.  Multimodality imaging of COVID-19 pneumonia: from diagnosis to follow-up. A comprehensive review.

Authors:  Anna Rita Larici; Giuseppe Cicchetti; Riccardo Marano; Biagio Merlino; Lorenzo Elia; Lucio Calandriello; Annemilia Del Ciello; Alessandra Farchione; Giancarlo Savino; Amato Infante; Luigi Larosa; Cesare Colosimo; Riccardo Manfredi; Luigi Natale
Journal:  Eur J Radiol       Date:  2020-08-17       Impact factor: 3.528

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  42 in total

1.  Comparison of next generation diagnostic systems (NGDS) for the detection of SARS-CoV-2.

Authors:  Antonio O Sanchez; Anna R Ochoa; Sallie L Hall; Chet R Voelker; Rachel E Mahoney; Jennifer S McDaniel; August Blackburn; Susana N Asin; Tony T Yuan
Journal:  J Clin Lab Anal       Date:  2022-02-17       Impact factor: 2.352

Review 2.  Role of molecular diagnostics in the clinical management of SARS-CoV-2 infection: advantages and drawbacks.

Authors:  C Martín-Higuera; I Muñoz-Gallego; M D Folgueira
Journal:  Rev Esp Quimioter       Date:  2021-09-30       Impact factor: 1.553

Review 3.  Two Years into the COVID-19 Pandemic: Lessons Learned.

Authors:  Severino Jefferson Ribeiro da Silva; Jessica Catarine Frutuoso do Nascimento; Renata Pessôa Germano Mendes; Klarissa Miranda Guarines; Caroline Targino Alves da Silva; Poliana Gomes da Silva; Jurandy Júnior Ferraz de Magalhães; Justin R J Vigar; Abelardo Silva-Júnior; Alain Kohl; Keith Pardee; Lindomar Pena
Journal:  ACS Infect Dis       Date:  2022-08-08       Impact factor: 5.578

4.  COVID-19 active case findings based on self-collected saliva samples with CRISPR-Cas12a detection.

Authors:  Naphat Chantaravisoot; Pornchai Kaewsapsak; Oraphan Mayuramart; Pattaraporn Nimsamer; Suwanan Mankhong; Nantinee Chomta; Rungnapa Bootsri; Isara Alee; Piriya Wongkongkathep; Sombat Treeprasertsuk; Sunchai Payungporn
Journal:  Exp Biol Med (Maywood)       Date:  2022-04-27

Review 5.  Advances in diagnostic tools for respiratory tract infections: from tuberculosis to COVID-19 - changing paradigms?

Authors:  Zoran Stojanovic; Filipe Gonçalves-Carvalho; Alicia Marín; Jorge Abad Capa; Jose Domínguez; Irene Latorre; Alicia Lacoma; Cristina Prat-Aymerich
Journal:  ERJ Open Res       Date:  2022-09-12

Review 6.  Lessons from SARS‑CoV‑2 and its variants (Review).

Authors:  Ziwen Qin; Yan Sun; Jian Zhang; Ling Zhou; Yujuan Chen; Chuanjun Huang
Journal:  Mol Med Rep       Date:  2022-06-22       Impact factor: 3.423

7.  Evaluation of the analytical performance of three chemiluminescence serological assays for detecting anti-SARS-CoV-2 antibodies.

Authors:  Bruna Lo Sasso; Luisa Agnello; Rosaria Vincenza Giglio; Concetta Scazzone; Davide Massa; Anna Maria Ciaccio; Caterina Maria Gambino; Matteo Vidali; Marcello Ciaccio
Journal:  Clin Exp Med       Date:  2022-10-19       Impact factor: 5.057

8.  Factors which impact the length of hospitalisation and death rate of COVID-19 patients based on initial triage using capillary blood gas tests: a single centre study.

Authors:  Tomasz Ilczak; Alicja Micor; Wioletta Waksmańska; Rafał Bobiński; Marek Kawecki
Journal:  Sci Rep       Date:  2022-10-19       Impact factor: 4.996

Review 9.  Advances in laboratory detection methods and technology application of SARS-CoV-2.

Authors:  Xiucai Zhang; Hanyan Meng; Huihui Liu; Qing Ye
Journal:  J Med Virol       Date:  2021-12-10       Impact factor: 20.693

Review 10.  Laboratory Diagnosis of SARS-CoV-2 Pneumonia.

Authors:  Melissa R Gitman; Maryia V Shaban; Alberto E Paniz-Mondolfi; Emilia M Sordillo
Journal:  Diagnostics (Basel)       Date:  2021-07-15
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