The structures of the solvated copper(II) ion in water and nine organic oxygen donor solvents with similar electron-pair donor ability, but with different space-demanding properties at coordination, have been studied by EXAFS. N,N'-Dimethylpropyleneurea and N,N,N',N'-tetramethylurea are sufficiently space demanding at coordination to make the axial positions not accessible, resulting in square-planar copper(II) solvate complexes with an intense green color. The mean Cu-O bond distances in these two solvate complexes are 1.939(3) and 1.935(3) Å, respectively. The best fits of the remaining solvates, which are light blue in different hues, are obtained with a Jahn-Teller distorted-octahedral model consisting of four strongly bound solvent molecules in the equatorial positions at 1.96(2) Å and two in the axial positions but with different Cu-Oax bond distances: ca. 2.15 and 2.32 Å. This is in agreement with observations in solid-state structures of compounds containing hexaaquacopper(II) complexes crystallizing in noncentrosymmetric space groups and all reported crystal structures containing a [Cu(H2O)5(O-ligand)] complex with Jahn-Teller distortion. Such a structure is in agreement with previous EPR and EXAFS studies proving the hydrated copper(II) ion to be a noncentrosymmetric complex in aqueous solution. The refinements of the EXAFS data of the solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, [Cu(H2O)6]SiF6, Cu(NO3)2·2.5H2O, and CuSO4·5H2O gave Cu-O bond distances significantly different from those reported in the crystallographic studies but similar to the configuration and bond distances in the hydrated copper(II) ion in aqueous solution. This may depend on whether the orientation of the axial positions is random in one or three dimensions, giving a mean structure of the solid with symmetry higher than that of the individual complexes. This study presents the very first experimental data from the new X-ray absorption spectroscopy beamline Balder at the MAX IV synchrotron radiation facility in Lund, Sweden, as well as the utilized properties of the beamline.
The structures of the solvated copper(II) ion in water and nine organicoxygen donor solvents with similar electron-pair donor ability, but with different space-demanding properties at coordination, have been studied by EXAFS. N,N'-Dimethylpropyleneurea and N,N,N',N'-tetramethylureaare sufficiently space demanding at coordination to make the axial positions not accessible, resulting in square-planarcopper(II) solvate complexes with an intense green color. The mean Cu-O bond distances in these two solvate complexesare 1.939(3) and 1.935(3) Å, respectively. The best fits of the remaining solvates, which are light blue in different hues, are obtained with a Jahn-Teller distorted-octahedral model consisting of four strongly bound solvent molecules in the equatorial positions at 1.96(2) Å and two in the axial positions but with different Cu-Oax bond distances: ca. 2.15 and 2.32 Å. This is in agreement with observations in solid-state structures of compounds containing hexaaquacopper(II)complexescrystallizing in noncentrosymmetric space groups and all reported crystal structures containing a [Cu(H2O)5(O-ligand)] complex with Jahn-Teller distortion. Such a structure is in agreement with previous EPR and EXAFS studies proving the hydrated copper(II) ion to be a noncentrosymmetriccomplex in aqueous solution. The refinements of the EXAFS data of the solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, [Cu(H2O)6]SiF6, Cu(NO3)2·2.5H2O, and CuSO4·5H2O gave Cu-O bond distances significantly different from those reported in the crystallographic studies but similar to the configuration and bond distances in the hydrated copper(II) ion in aqueous solution. This may depend on whether the orientation of the axial positions is random in one or three dimensions, giving a mean structure of the solid with symmetry higher than that of the individual complexes. This study presents the very first experimental data from the new X-ray absorption spectroscopy beamline Balder at the MAX IV synchrotron radiation facility in Lund, Sweden, as well as the utilized properties of the beamline.
The most debated hydrated
metal ion by far in recent years is copper(II). It was assumed for
a long time that the hydrated copper(II) ion is six-coordinate with
a tetragonally elongated octahedral configuration along a 4-fold axis,
known as Jahn–Teller distortion,[1−3] in aqueous solution.
It can be concluded that a majority of the solid compounds containing
a hydrated copper(II) ion have this configuration[4,5] (Table S1). This has led many to believe that
the same structure is also present in aqueous solution, even though
a structure of a metalcomplex in the solid state cannot be related
to its structure in solution.[6] Linear electric
field EPR studies gave the first indications that the hydrated copper(II)
ion in aqueous solution was not centrosymmetric, as required by a
regular Jahn–Teller distorted octahedron.[7,8] A
combined neutron scattering and molecular dynamics study proposed
that the hydrated copper(II) ion is five-coordinate in aqueous solution.[9] This study was followed a by series of publications
using EXAFS and XANES spectroscopy, X-ray and neutron scattering on
liquids, and DFT and QM/MD simulations on different levels to study
the coordination chemistry of the hydrated copper(II) ion in aqueous
solution.[10−25] A majority of these studies propose a tetragonally elongated square-pyramidal
configuration as the most likely or stable structure,[9,10,13,15,16,25] but several
studies have proposed dynamic equilibria among four-, five-, and/or
six-coordinated hydrate complexes,[14,19,20,22,23] as well as a six-coordinate Jahn–Teller distorted-octahedral
configuration.[11,12,18,21] This shows that the discussion of the structure
of the hydrated copper(II) ion aqueous solution is still a matter
of debate.The most extensive experimental studies have been
performed by Frank and co-workers, who in a series of studies have
applied XANES and high-k EXAFS spectroscopy on both
aqueous solutions and frozen samples of the hydrated copper(II) ion.[13,22,25] They have applied three basic
models: five-coordination in a tetragonally elongated square-pyramidal
configuration and six-coordination in Jahn–Teller distorted-octahedral
configurations with equal (centrosymmetric) and different Cu–O
bond distances in the axial positions (noncentrosymmetric). The EXAFS
data of an aqueous copper(II) solution were fitted equally well with
square-pyramidal and noncentrosymmetric Jahn–Teller distorted-octahedral
models, with Cu–O bond distances of 1.97 and 2.21 Å and
of 1.97, 2.19, and 2.33 Å, respectively.[22] On the other hand, in the refinement of XANES data using the MXAN
program, the best fit was obtained with a square-pyramidal model with
Cu–O bond distances of 1.95 and 2.23 Å.[22] Studies on frozen samples of 1,3-propanediol and 1,5-pentanediol
aqueous glasses revealed asymmetricsix-coordination with Cu–Oeq, Cu–Oax1, and Cu–Oax2 bond distances of 4 × 1.94, 2.22, and 2.34 Å, respectively,
from EXAFS data, while MXAN data revealed coppersites with two kinds
of six-coordination, asymmetric Jahn–Teller distorted-octahedral
(4 × 1.94, 1 × 2.14, and 2.28 Å) and capped-square-pyramidal
configurations (5 × 1.94 and 2.22 Å), and five-coordinated
sites in a square-pyramidal configuration (4 × 1.95 and 2.23
Å).[25] D’Angelo and co-workers
have studied the solvated copper(II) ion methanol, dimethyl sulfoxide
and acetontrile solution by combined XANES and EXAFS, showing that
tetragonally elongated square-pyramidal coordination is preferred
in these solvents.[26,27]It is important to emphasize
that techniques such as EXAFS and XANES spectroscopy cannot give an
absolute answer about the structure, as several models may fit the
experimental data equally or almost equally well and the starting
model may affect the outcome of the refinement. It is therefore important
to test as many reasonable structure models as possible. Calculations
have shown that the energy barrier between centrosymmetric Jahn–Teller
distorted [Cu(H2O)4(H2O)2]2+ and noncentrosymmetric [Cu(H2O)4(H2O)(H2O)]2+ is small, −82
meV (−7.95 kJ mol–1).[17] Independent QMCF/MD molecular dynamics calculations did
observe this delicate energy balance, resulting in a mean equilibrium
geometry with Cu–O bond distances of 4 × 2.03, 2.15, and
2.30 Å and 4 × 2.07 and 2 × 2.2 Å including and
excluding the second hydration shell into the QM zone, respectively,
and a B3LYP/MM simulation, 4 × 2.02 and 2 × 2.29 Å.[11,12]In order to give another perspective on this debate, a survey
and analysis of reported solid-state structures containing four-,
five-, and six-coordinate copper(II) hydrates and other copper(II)complexes with oxygen donor ligands are presented in this study. Of
these structures, a large majority have a Jahn–Teller distorted-octahedral
geometry around copper(II). Of the 139 reported crystal structures
containing a [Cu(H2O)6]2+ ion, 105
report a regular Jahn–Teller distorted configuration with pairwise
equal Cu–O bond distances due to symmetry rules of the space
groups. The mean Cu–Oeq and Cu–Oax bond distances in these structures are 1.981 and 2.332 Å, respectively
(Table S1). Two structures containing a
[Cu(H2O)6]2+ ion crystallize in a
centrosymmetric space group, but the copper in the [Cu(H2O)6]2+ ion is not in the center of symmetry,[28,29] and another five structures crystallize in noncentrosymmetric space
groups.[30−33] In these seven structures the axial Cu–O bond distances are
significantly different with mean distances of 2.298 and 2.362 Å
(Table S1). A limited number of the hexaaquacopper(II)complexesare reported to have regular or slightly irregular octahedral
configurations: 7 and 21, respectively (Table S1).To further check whether there are more examples
showing a significant difference in the Cu–Oax bond
distances, crystal structures containing complexes with the composition
[Cu(H2O)5O′], where O′ is a monodentate
oxygen donor ligand, with reported Jahn–Teller distortion were
summarized, as such complexescannot individually be centrosymmetric.
Indeed, all of these structures display significantly different Cu–Oax bond distances (Table S2), and
they all have similarCu–O bond distances in the equatorial
positions independent of whether the O′ ligand binds in an
equatorial or an axial position. Four of these structures have water
molecules in the axial positions, and the difference in Cu–Oax bond distance is 0.07–0.43 Å, and a similar
pattern is seen in the compounds with the O′ ligand in the
axial position (Table S2).A possible
reason as to why a majority of the structures with hexaaquacopper(II)
ions crystallize in centrosymmetric space groups is that the direction
of possibly different Cu–Oax bond distances is randomly
distributed in the structure. The mean structure, from a crystallographic
point of view, becomes centrosymmetric with identical Cu–Oax bond distances. This is certainly also the case for the
28 crystal structures reporting an apparent regular or a slightly
distorted octahedral [Cu(H2O)6]2+ complex, but here the random orientation of the axial positions
is distributed in three dimensions (Table S1). When the orientation of the axial positions is randomly distributed
in the structure, the mean structure has a higher symmetry in comparison
to the individual complexes, and the observed space group is thereby
allowed to have higher symmetry in comparison to the individual complexes.
By using a lattice-independent structure method such as EXAFS the
distances to the absorbing atom are independent of orientation in
space, giving the actual distance distribution. A
previous EXAFS study has shown that the crystal structures of [Cu(H2O)6](BrO3)2 and [Cu(H2O)6]SiF6, and some other six-coordinate
homolepticcopper(II)complexes displaying regular octahedral geometry,
actually have a distorted geometry with two well-separated distances.[34] This “too high symmetry” effect
has been also seen in e.g. the crystal structures of [Sc(H2O)8.0](CF3SO3)3 and [Lu(H2O)8.2](CF3SO3)3.[35,36] In these two cases, a phase transition to
lower symmetry takes place on cooling and the true structure is observed
in the low-temperature phases. EXAFS studies have shown that these
complexes have the same structure independent of the temperature of
the solid or in aqueous solution.[35,36]The
number of tetra- and pentaaquacopper(II)complexes with no other ligands
within the sum of the van der Waals radii[37] reported in crystallographic studies is low. Only four structures,
each with a tetra- or pentaaquacopper(II) ion, have been reported
(Table S3). Due to the limited number of
such reported structures, the literature search was extended to all
four-and five-coordinate copper(II)complexes with oxygen donor ligands.
The four-coordinate complexes have all a square-planarcoordination
geometry with a mean Cu–O bond distance of 1.928 Å (68
structures) (Table S3). Of the five-coordinate
copper(II)complexes with oxygen donor ligands all except one display
a tetragonally elongated square-pyramidal geometry, with the last
one being a trigonal bipyramid (Table S3). The mean Cu–O bond distance in the square-pyramidal copper(II)complexes is 1.955 Å in the equatorial plane and 2.258 Å
to the ligand in the axial position (37 structures) (Table S3).To summarize the present knowledge about
the structure of the hydrated copper(II) ion in aqueous solution,
(1) there is strong evidence that it is noncentrosymmetric, as shown
by linear electric field EPR[6,7] and X-ray absorption
spectroscopy studies,[13,22,25] (2) different kinds of theoretical simulations have shown that [Cu(H2O)5]2+ and [Cu(H2O)5··H2O]2+ units are more stable in
aqueous solution in comparison to a regular Jahn–Teller distorted
[Cu(H2O)6]2+ ion,[9−16,21−23,25] and (3) solid-state structures containing [Cu(H2O)6]2+ ions crystallize in noncentrosymmetric
space groups or in centrosymmetric space groups but the copper in
[Cu(H2O)6]2+ is not in the center
of symmetry and [Cu(H2O)5(O′)] complexes
display a significant difference in the axial Cu–O bond distances
as discussed above.The aim of this study is to collect high-quality
EXAFS data to high k values of solvated copper(II)
ions in solution in series of oxygen donor solvents and to test which
of the three different models, a tetragonally elongated square pyramid
(5-coordination) and tetragonally elongated octahedra with the same
or different axial Cu–O bond distances (6-coordination), fit
the data best and to make comparisons to previously reported EXAFS
and MXAN studies[13,22,25] on the hydrated copper(II) ion in aqueous solution. The studied
solvents all have similar physicochemical properties (Table S4) and represent increasing spatial demand
upon coordination in order to study whether lower coordination numbers
are present for the solvents most space-demanding at coordination.
For example, it has previously been reported that the copper(II) ion
is four-coordinate in hexamethylphosphoric triamide, a space-demanding
solvent at coordination.[38] Another aim
is to confirm or disprove whether the Cu–O bond distances reported
in the crystal structures of [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, [Cu(H2O)6]SiF6, Cu(NO3)2·2.5H2O, and CuSO4·5H2Oare in agreement with the Cu–O bond
distances obtained by EXAFS. If the crystallographic investigations
of the reported structures cannot be confirmed by EXAFS, it becomes
evident that crystallographic studies of compounds crystallizing in
e.g. centrosymmetric space groups may result in structural information
with higher symmetry in comparison to the individual units, e.g. metalcomplexes, thereby leading to an incorrect description.
Experimental Section
Chemicals
Methanol (CH3OH; MeOH), N,N-dimethylformamide ((CH3)2NCHO; dmf), N,N-diethylformamide ((CH3CH2)2NCHO; def), N,N-dimethylacetamide ((CH3)2NC(CH3)O; dma), N,N-diethylacetamide ((CH3CH2)2NC(CH3)O; dea), N,N-dimethylpropionamide ((CH3)2NC(CH3CH2)O; dmp), N,N-diethylpropionamide
((CH3CH2)2NC(CH3CH2)O; dep), N,N,N′,N′-tetramethylurea ((CH3)2N)2CO; tmu), and N,N′-dimethylpropyleneurea ((CH2)3N(CH3)2CO; dmpu), all Sigma-Aldrich, were used
as purchased except for dmpu, which was purified by distillation over
calcium hydride (CaH2; Merck) under reduced pressure and
stored over 3 Å molecularsieves in a dark bottle. Deionized
water that was further purified by a Milli-Q Plus Ultrapure water
system, giving water with 18.2 MΩ cm resistance was used in
syntheses of the hydrated copper(II) salts and in the preparation
of aqueous solutions.Copper powder (Aldrich, 99.9999% purity,
lot #1297) was dissolved in concentrated nitric acid (Merck, analytical
grade). After a part of the obtained solution was cooled in a refrigerator,
solid copper(II) nitrate hemipentahydrate (Cu(NO3)2·2.5H2O) precipitated. After dilution of the
remaining part of this solution with deionized water, a 5 mol dm–3 sodium hydroxide solution (prepared from sodium hydroxide
(NaOH; Merck, analytical grade) was added to precipitate copper(II)
hydroxide, which was rinsed several times with water. Anhydrous copper(II)trifluoromethanesulfonate (Cu(CF3SO3)2) was prepared by adding an excess of trifluoromethanesulfonic acid
(CF3SO3H; Fluka) dropwise to an aqueous slurry
of copper(II) hydroxide until a clear solution was obtained. The obtained
solution was filtered, and water and excess acid were boiled off at
approximately 450 K in an oven. The resulting anhydrous copper(II)trifluoromethanesulfonate was repeatedly ground using a mortar and
pestle with oven drying at 450 K in between until a fine, dry, almost
white powder was obtained. The dry salt was stored in the oven at
450 K to avoid uptake of water. Hexaaquacopper(II) perchlorate ([Cu(H2O)6](ClO4)2) was prepared
by dissolving copper(II) hydroxide in dilute perchloric acid (HClO4), the volume was reduced, and precipitation took place after
cooling in a refrigerator. Copper(II) sulfate pentahydrate (CuSO4·5H2O) was prepared in the same way as the
perchlorate salt but using dilute sulfuric acid, prepared from concentrated
sulfuric acid (Merck, analytical grade, 98%). The identities of the
prepared solid compounds were confirmed by determinations of the unit
cell parameters crystallographically.
Solutions and Crystals
The solutions for the EXAFS studies were prepared by dissolving
anhydrous copper(II) trifluoromethanesulfonate in the respective solvent
to a concentration of 0.19 mol dm–3 (Table S5). All solutions, except the dmpu and
tmu solutions, are light blue with somewhat different hues. The dmpu
and tmu solutions are dark green. In another experiment a saturated
copper(II) trifluoromethanesulfonatedmpu solution was stored in a
refrigerator for several years. Only low-quality single-crystals of
tetrakis(N,N′-dimethylpropyleneurea)copper(II)trifluoromethanesulfonate monosolvate ([Cu(dmpu)4](CF3SO3)2·dmpu; 1) were
obtained. The reported crystal structure represents the best of these.
Repeated attempts to prepare better crystals, using different common
methods, failed.
Balder Beamline at the MAX IV Synchrotron
Light Facility, Lund, Sweden
Copper K-edge X-ray absorption
data were collected in transmission mode at the Balder beamline at
the MAX IV synchrotron light facility, Lund University, Lund, Sweden.
Balder is a new high-flux wiggler beamline for X-ray absorption and
emission spectroscopy at the 3.0 GeV storage ring.[39] High data acquisition speed is crucial to be able to perform
X-ray spectroscopy experiments over 2000 eV without significant radiation
damage. The double-crystal fixed exit monochromator (DCM) (FMB Oxford)
is equipped with a direct drive motor on the Bragg axis, allowing
for scan speeds up to 0.5 s/1000 eV. In the current configuration
of the data acquisition a full EXAFS scan can be performed within
acquisition times down to 12 s. Spectra were acquired using a continuous
scan scheme, where the Bragg axis as well as the vertical beam offset
are moved simultaneously with constant velocity to fix the vertical
position of the beam. The Bragg axis is equipped with a rotary encoder
with a resulting resolution of 50 counts/μrad. Data acquisition
was performed using an Em# electrometer device,[40] which is an MAX IV codevelopment together with ALBA of
Spain. The acquisition is (hardware) triggered at predefined positions
of the Bragg axis on the basis of a comparison of the encoder readout
with a look-up table of trigger positions at FPGA (field programmable
gate array) level utilizing the PandABox developed at Soleil in France,
and Diamond in the United Kingdom.[41] The
DCM is equipped with two sets of crystals, Si(111) and Si(311), of
which the Si(111) crystal set was employed in this study. A vertically
position sensitive ionization chamber is coupled in closed-loop operation
to a piezo drive on the pitch axis of the second monochromator crystal
for further stabilization of the beam position on the sample during
a scan. Custom-developed ionization chambers were used for transmission
measurements. The ion chambers are 30 cm long; the first one, I0, contained 1.5 bar of N2 (applied potential 2.0
kV) and the second one, I1, contained 0.2 bar of Ar and
1.8 bar of N2 (applied potential 2.5 kV).
Extended X-ray
Absorption Fine Structure (EXAFS)
The copper K-edge X-ray
absorption data in this study were collected in transmission mode.
The liquid sample cells were made of a 3.0 mm Teflon spacer and Kapton
foil windows held together with titanium frames. The solid samples
were measured as pressed pellets with cellulose or polyethylene as
the binding medium. The XAS spectra were measured in continuous energy
scanning at a speed of 50 s/full EXAFS spectrum (kmax = 18 Å–1). The monochromatic
flux at the sample was ∼1012 photons/s with a spot
size of approximately 0.10 (horizontal) × 2.0 (vertical) mm.
For each sample, 20 repeats were examined for possible radiation damage
and afterward accumulated into an average spectrum. Radiation damage,
if it happens, is in solid samples seen as sharp bends on the absorption
coefficient curves and as color variation of the sample visible live
by a macro camera. In general, only a single EXAFS scan was recorded
on each sample position. Immediately before the start of each repeat,
the sample was shifted by 0.20 mm horizontally into a fresh position
to avoid radiation dose accumulation. It was seen that aqueous solutions
and solid hydrates were the most prone to radiation damage, due to
water radiolysis as reported before.[42] In
such cases, when bubbles were seen rapidly forming or abnormal changes
in the EXAFS spectrum were observed, the scanning speed was increased
to 25 s/full EXAFS spectrum. The energy axis was calibrated with repeated
spectra of a copper foil with the first inflection point assigned
as 8980.3 eV.[43] The EXAFSPAK[44] program package was used for data treatment.
The EXAFS oscillations were extracted using standard procedures for
pre-edge subtraction, spline removal, and data normalization.[45] Model fitting, including both single and multiple
backscattering pathways, was performed with theoretical phase and
amplitude functions calculated ab initio by means
of the computer code FEFF7.[46] The k3-weighted EXAFS oscillation was analyzed using
a nonlinear least-squares fitting procedure.
Large-Angle X-ray Scattering
(LAXS)
The scattering from the free surface of a saturated
dmpu solution of copper(II) trifluoromethanesulfonate, (∼0.8
mol dm–3) was measured with a large-angle θ–θ
goniometer, as previously described.[47,48] Intensity
data were collected in the range 1 < θ < 65° using
Mo Kα radiation (λ = 0.7107 Å), following the same
procedure as described elsewhere.[49] The
experimental intensities were corrected for absorption and polarization
and normalized to a stoichiometric unit of volume corresponding to
one copper atom. After subtraction of the structure-independent coherent
and Compton scattering, the remaining structure-dependent intensity
function i(s) was Fourier-transformed
to obtain a modified radial distribution function (RDF), expressed
in the form D(r) – 4πr2r0. Minor erroneous
peaks below 1.2 Å in the RDFs were removed by a Fourier back-transform
procedure to align the intensity function before fitting the model
functions. The KURVLR program[50] was used
for data treatment and the STEPLR program[51] for least-squares refinements of model parameters by comparing calculated
intensity contributions for distinct interatomic interactions with
the experimental reduced intensities for values of s > 3.7 Å–1 (s = (4π/λ)
sin θ).
Single-Crystal X-ray Diffraction
Data collection were performed on a Bruker SMART platform equipped
with a CCD area detector and a graphite monochromator using Mo Kα (λ = 0.7107 Å) radiation at ambient room
temperature. A hemisphere of data with 1271 frames was collected using
the ω scan method (0.3° frame width). The crystal to detector
distance was 50 mm. The first 50 frames were remeasured at the end
of the data collection to monitor crystal and instrument stability.
The structure was solved by direct methods in the SHELX 2016/6 program
package[52] and refined using full-matrix
least squares on F.Non-hydrogen atoms were treated anisotropically. Hydrogen atoms were
calculated in ideal positions riding on their respective carbon atoms.
Crystal and experimental data for 1 are summarized in Table .
Table 1
Crystallographic Data for 1
C38H72CuF6N12O12S2
mol wt
1130.73
cryst syst
monoclinic
space group
P21/c
a/Å
12.629(6)
b/Å
21.740(10)
c/Å
10.050(5)
α/deg
90
β/deg
103.046(8)
γ/deg
90
V/Å3
2688(2)
T/K
298(2)
Z
2
ρcalcd/g cm–3
1.397
μ/mm–1
0.570
cryst size/mm
0.27 × 0.22 ×
0.18
θ
range/deg
1.66–25.68
index ranges
–15 ≤ h ≤ 15, −23
≤ k ≤ 26, −11 ≤ l ≤ 12
no. of measd rflns
13755
no. of unique rflns (Rint)
5094 (0.0511)
refinement method
full-matrix least squares on F2
final R1, wR2 (I >
2σ(I))a
0.0727, 0.1960
final R1, wR2 (all data)a
0.1197, 0.2324
max diff peak/e Å–3
0.377
max diff hole/e Å–3
–0.273
R values are defined as R1 = ∑||Fo| – |Fc||/∑|Fo| and wR2 = [∑[w(Fo2 – Fc2)]/∑[w(Fo2)2]]0.5.
R values are defined as R1 = ∑||Fo| – |Fc||/∑|Fo| and wR2 = [∑[w(Fo2 – Fc2)]/∑[w(Fo2)2]]0.5.
UV–Vis Spectrophotometry
A PerkinElmer Lambda 2 double-beam spectrophotometer was used to
record the UV–vis spectra of the copper(II) trifluoromethanesulfonate
solutions studied by EXAFS. The recorded spectra after appropriate
dilution are shown in Figure S1.
Results
and Discussion
EXAFS Study of the Hydrated Copper(II) ion
in Aqueous Solution and the Solid State
In this study EXAFS
data on an aqueous solution of copper(II) trifluoromethanesulfonate
and the solids [Cu(H2O)6](ClO4)2, Cu(NO3)2·2.5H2O, and
CuSO4·5H2O have been collected at the Balder
beamline. They are compared with data on a 0.50 mol dm–3 aqueous solution of copper(II) perchlorate and the solids [Cu(H2O)6](BrO3)2, and [Cu(H2O)6]SiF6, collected at beamline 4-1
(old station) at the Stanford Synchrotron Radiation Lightsource (SSRL),
reported in ref (34). The EXAFS spectra of the aqueous solutions and the solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, and [Cu(H2O)6]SiF6 almost superimpose each other, showing
that they have identical or at least very similar structures (Figure ). Also solid Cu(NO3)2·2.5H2O almost superimposes with
the aqueous copper(II) solutions, implying a structural similarity
even though copper(II) binds nitrate oxygens in the equatorial and
axial positions[53−55] (Figure ). The data collected at SSRL have been refitted with the
three models used in this study. The results of the refinements of
the EXAFS data of the aqueous solutions and these solids are summarized
in Table . The best
fit of the hydrated copper(II) ion in aqueous solution is obtained
by a model with four Cu–Oeq bond distances in the
equatorial plane at 1.956(3) Å and two separate Cu–Oax bond distances of 2.14(2) and 2.32(2) Å, which are
in close agreement with an EXAFS study reported by Frank et al.[22] In the solids [Cu(H2O)6](ClO4)2 and [Cu(H2O)6]SiF6, the Cu–Oeq bond distances are
within the limit of errors the same, 1.963(6) Å, the Cu–Oax bond distances are slightly longer than those in aqueous
solution, 2.18(1), 2.34(1) Å and 2.21(2), 2.32(3) Å, respectively.
In solid [Cu(H2O)6](BrO3)2 the Cu–Oeq and Cu–Oax bond distances
are slightly longer, 1.967(5), 2.21(2) Å and 2.42(2) Å.
Figure 1
Raw EXAFS
spectra of a 0.20 mol dm–3 aqueous copper(II) trifluoromethanesulfonate
solution (black line), 0.50 mol dm–3 aqueous copper(II)
perchlorate solution (reported in ref (34), purple line, offset 4), solid [Cu(H2O)6](ClO4)2 (red line, offset 4),
solid Cu(NO3)2·2.5H2O (blue
line, offset 6), solid [Cu(H2O)6](BrO4)2 (reported in ref (34), yellow line, offset 8), and [Cu(H2O)6]SiF6 (reported in ref (34), green line, offset 10).
Table 2
Summary of Refinements of EXAFS Data
Using a Noncentrosymmetric Tetragonally Elongated Octahedral Geometry
of the Hydrated Copper(II) ion in Water (aq) and the Solid State for
[Cu(H2O)6](ClO4)2 (A), Cu(NO3)2·2.5H2O
(B), CuSO4·5H2O (C), [Cu(H2O)6](BrO3)2 (D), and [Cu(H2O)6]SiF6 (E)a
water
water*
A
B
C
D*
E*
d(Cu–Oeq)
1.957(3)
1.954(8)
1.963(3)
1.959(3)
1.959(3)
1.967(5)
1.962(6)
σ2(Cu–Oeq)
0.0055(3)
0.0069(8)
0.0060(3)
0.0052(3)
0.0051(3)
0.0052(7)
0.0050(8)
n(Cu–Oeq)
4
4
4
4
4
4
4
d(Cu–Oax1)
2.14(2)
2.15(5)
2.184(8)
2.176(6)
2.218(9)
2.21(2)
2.21(2)
σ2(Cu–Oax1)
0.007(2)
0.012(6)
0.0065(9)
0.0072(6)
0.0066(7)
0.010(2)
0.011(4)
n(Cu–Oax1)
1
1
1
1
1
1
1
d(Cu–Oax2)
2.32(2)
2.36(4)
2.343(8)
2.394(8)
2.376(9)
2.42(2)
2.32(3)
σ2(Cu–Oax2)
0.009(2)
0.014(6)
0.0076(8)
0.0084(8)
0.0074(9)
0.010(2)
0.012(3)
n(Cu–Oax2)
1
1
1
1
1
1
1
d(MS(CuO4))
3.914b
3.908b
3.926b
3.917b
3.918b
3.934b
3.924b
σ2(MS(CuO4))
0.012(3)
0.013(4)
0.010(3)
0.010(2)
0.032(3)
0.010(4)
0.010(4)
n(MS(CuO4))
3*4
3*4
3*4
3*4
3*4
3*4
3*4
d(Cu–S1)
3.58(2)
σ2(Cu–S1)
0.012(3)
n(Cu–S1)
1
d(Cu–S2)
3.74(7)
σ2(Cu–S2)
0.024(8)
n(Cu–S2)
1
S02
0.93(4)
1.03(4)
1.06(4)
0.95(3)
1.05(3)
0.72(5)
0.84(5)
E0
8989.7(5)
8988.7(6)
8989.6(5)
8989.6(3)
8989.9(5)
8989.5(5)
8989.9(5)
F
18.14
8.19
16.36
7.98
12.85
8.19
9.69
Definitions: distance, d/Å;
Debye-Waller coefficient, σ2/Å2;
number of distances, n; amplitude reduction factor, S02; threshold energy, E0/eV; weighted F factor, F. The asterisk denotes data collected at SSRL in 2001. Estimated
errors within parentheses include the statistical errors from the
refinements and estimated experimental errors. Parameters without
following parentheses have been fixed.
The linear multiple scattering distance with in the CuO4 equatorial plane has been linked to the Cu–O bond
distance.
Raw EXAFS
spectra of a 0.20 mol dm–3 aqueous copper(II) trifluoromethanesulfonate
solution (black line), 0.50 mol dm–3 aqueous copper(II)
perchlorate solution (reported in ref (34), purple line, offset 4), solid [Cu(H2O)6](ClO4)2 (red line, offset 4),
solid Cu(NO3)2·2.5H2O (blue
line, offset 6), solid [Cu(H2O)6](BrO4)2 (reported in ref (34), yellow line, offset 8), and [Cu(H2O)6]SiF6 (reported in ref (34), green line, offset 10).Definitions: distance, d/Å;
Debye-Waller coefficient, σ2/Å2;
number of distances, n; amplitude reduction factor, S02; threshold energy, E0/eV; weighted F factor, F. The asterisk denotes data collected at SSRL in 2001. Estimated
errors within parentheses include the statistical errors from the
refinements and estimated experimental errors. Parameters without
following parentheses have been fixed.The linear multiple scattering distance with in the CuO4 equatorial plane has been linked to the Cu–O bond
distance.The mean Cu–Oeq and Cu–Oax bond distance in solid Cu(NO3)2·2.5H2O have been refined to 1.959(3), 2.176(6),
and 2.39(1) Å, respectively (Table ). The fitting using models with copper binding
four solvent molecules in the equatorial plane and two in an axial
position at the same Cu–Oax bond distance (centrosymmetric
Jahn–Teller distorted-octahedral geometry) or only one solvent
molecule in the axial position of a tetragonally elongated square
pyramid are slightly worse than the model with different bond distances
in the axial positions. The structure parameters obtained in the refinements
applying these models are given in Table and Table S6.
The fit of raw EXAFS data and the Fourier transforms are shown in Figures and 3, respectively.
Figure 2
Fit of raw EXAFS data of (a) solid copper(II)
sulfate pentahydrate (CuSO4·5H2O, offset
10), (b) solid hexaaquacopper(II) hexafluorosilicate ([Cu(H2O)6]SiF6, offset 8), (c) solid hexaaquacopper(II)
bromate ([Cu(H2O)6](BrO3)2, offset 6), (d) solid hexaaquacopper(II) nitrate (Cu(NO3)2·2.5H2O, offset 4), (e) solid hexaaquacopper(II)
perchlorate ([Cu(H2O)6](ClO4)2, offset 2), and (f) aqueous solution of copper(II) trifluoromethanesulfonate
(no offset).
Figure 3
Fit of Fourier transforms of EXAFS data of (a)
solid copper(II) sulfate pentahydrate (CuSO4·5H2O, offset 1.0), (b) solid hexaaquacopper(II) hexafluorosilicate
([Cu(H2O)6]SiF6, offset 0.8), (c)
solid hexaaquacopper(II) bromate ([Cu(H2O)6](BrO3)2, offset 0.6), (d) solid hexaaquacopper(II) nitrate
([Cu(H2O)6](NO3)2, offset
0.4), (e) hexaaquacopper(II) perchlorate (Cu(NO3)2·2.5H2O, offset 0.2), and (f) aqueous solution of
copper(II) trifluoromethanesulfonate (no offset).
Fit of raw EXAFS data of (a) solid copper(II)sulfate pentahydrate (CuSO4·5H2O, offset
10), (b) solid hexaaquacopper(II) hexafluorosilicate ([Cu(H2O)6]SiF6, offset 8), (c) solid hexaaquacopper(II)
bromate ([Cu(H2O)6](BrO3)2, offset 6), (d) solid hexaaquacopper(II)nitrate (Cu(NO3)2·2.5H2O, offset 4), (e) solid hexaaquacopper(II)
perchlorate ([Cu(H2O)6](ClO4)2, offset 2), and (f) aqueous solution of copper(II) trifluoromethanesulfonate
(no offset).Fit of Fourier transforms of EXAFS data of (a)
solid copper(II) sulfate pentahydrate (CuSO4·5H2O, offset 1.0), (b) solid hexaaquacopper(II) hexafluorosilicate
([Cu(H2O)6]SiF6, offset 0.8), (c)
solid hexaaquacopper(II) bromate ([Cu(H2O)6](BrO3)2, offset 0.6), (d) solid hexaaquacopper(II)nitrate
([Cu(H2O)6](NO3)2, offset
0.4), (e) hexaaquacopper(II) perchlorate (Cu(NO3)2·2.5H2O, offset 0.2), and (f) aqueous solution of
copper(II) trifluoromethanesulfonate (no offset).The three crystallographic studies on [Cu(H2O)6](ClO4)2 have reported very different Cu–O
bond distance distributions, in spite of reporting the same space
group, P21/c (No. 14) (Table S7).[56−58] Two of these report very similar unit cell parameters,[56,57] while the third study differs significantly[58] (Table S7). In the first reported structure,[56] the hydrated copper(II) ion is six-coordinate
with the expected Cu–Oeq bond distances for a Jahn–Teller
distorted complex. By a fit the present EXAFS data with the reported
Cu–O bond distances fixed, the fit is reasonable but the axial
distances are clearly wrong with a very large Debye–Waller
coefficient, σ2 = 0.05 Å2, and a
remaining wave in the residual (Figure S2a); the corresponding Fourier transform (FT) is shown in Figure S3a. The other two reported structures[57,58] propose pairwise Cu–O bond distances at 2.090, 2.164, and
2.280 Å and 1.969, 2.084, and 2.202 Å, respectively, which
are in strong contradiction to most other reported hexaaquacopper(II)complexes (Table S1). The calculated EXAFS
spectra based on the reported Cu–O bond distances are almost
completely out of phase in comparison to the experimental EXAFS data
(Figure S2b,c) and the corresponding FTs
in Figure a.The crystallographic studies of [Cu(H2O)6](BrO3)2 and [Cu(H2O)6]SiF6 report a regular octahedral structure of the hexaaquacopper(II)
ion with Cu–O bond distances of 2.079 and 2.074 Å,[59,60] respectively, but they have been proven to have a nonregular octahedral
geometry as reported before.[34] The calculated
EXAFS functions on these structures are completely out of phase with
the experimental data (Figure S2d,e) and
the corresponding FTs in Figure S3b,c,
showing that the reported structures from crystallography cannot be
correct as discussed above and before.[34]The crystal structure of Cu(NO3)2·2.5H2O has been reported in three papers.[53−55] Copper(II)
binds two water molecules and two nitrate oxygens in the equatorial
positions at Cu–O bond distances of 1.959 and 1.986 Å,
respectively and additionally three nitrate oxygens at longer distances,
one at 2.391 Å and two close to 2.66 Å[53] (Table S7b). The other two determinations
report slightly different Cu–O bond distances, 2.476 and two
close to 2.62 Å (Table S7b).[54,55] The fit of the EXAFS data gave a mean Cu–Oeq bond
distance of 1.959 Å and three longer Cu–Oax/Cu···N distances to nitrate ions at 2.183(5), 2.398(5),
and 2.734(8) Å. The Cu–Oeq bond distance obtained
in this EXAFS study is slightly shorter (1.959(3) Å) than the
mean distances in the reported crystallographic investigations (1.972
and 1.990 Å)[53,55] but is in agreement with the
Cu–Oeq distances in aqueous solution and the other
salts containing hydrated copper(II) ions (Table ). It is interesting to note that the Cu–O
bond distance at 2.39(1) Å fits perfectly, and the longest Cu–O/N
distances fit reasonably well with distances reported in the crystallographic
study of Cu(NO3)2·2.5H2O. However,
these distances cannot be refined without the presence of a relatively
short Cu–Oax bond distance, refined to 2.176(6)
Å, which is absent in the crystal structure. The best possible
fit of the EXAFS data with the reported Cu–O bond distances
in ref (53) is shown
in Figure S2f and the corresponding FT
in Figure S3d. In solid CuSO4·5H2O, which crystallizes in the centrosymmetric
space group P1̅ (No. 2), copper binds four
water molecules in the equatorial plane and two sulfateoxygens in
the axial positions in room-temperature studies.[61−66] The mean Cu–Oeq bond distances in CuSO4·5H2O obtained by EXAFS in this study, 1.959(3) Å
(Table ), is in very
good agreement with those in the reported crystallographic studies.
However, for the axial positions two different Cu–Oax bond distances are discerned, 2.22(1) and 2.38(1) Å (Table ). The long Cu–Oax,SO4 bond distance is in good agreement with that reported
distances in the crystallographic studies,[61−66] while the short Cu–Oax,SO4 bond distance obtained
in this EXAFS study is significantly shorter. The fit of the raw EXAFS
data and the Fourier transforms of the studied solid copper(II) hydrates
are shown in Figures and 3, respectively, and the refined structure
parameters are given in Table . Also in this case it is proven that the crystallographically
determined Cu–O bond distances are not in full agreement with
the experimental EXAFS data as shown in Figure S2g and the corresponding FT data in Figure S3e.These results show that the structure of the [Cu(H2O)6]2+ complex in solid [Cu(H2O)6(ClO4)2, [Cu(H2O)6](BrO3)2, and [Cu(H2O)6]SiF6, the [Cu(OH2)2(ONO2)2]·unit in Cu(NO3)2·2.5H2O, and the [Cu(H2O)4(OSO3)2] unit in CuSO4·5H2O reported from crystallographic studies cannot be confirmed by the
lattice-independent EXAFS method. All of the analyzed solid-state
structures were solved in centrosymmetric space groups, which required
pairwise equal Cu–O bond distances or a regular octahedral
geometry. It therefore seems likely that the Cu–Oax bonds in these compounds also may have different bond lengths, according
to the EXAFS results, and that they are randomly oriented in the solid
state in either one dimension, resulting in an apparent centrosymmetric
Jahn–Teller distorted-octahedral configuration, or in three
dimensions, resulting in regular or slightly distorted octahedra.
As a consequence, it seems likely that most of the reported crystal
structures containing a hexaaquacopper(II) ion crystallizing in a
centrosymmetric space group actually have a similar bond distance
distribution in the axial positions, as observed in aqueous solution
and the five solids analyzed in this study. It is therefore important
to complement crystallographic studies with a lattice-independent
method such as EXAFS to secure that a high-symmetry model indeed is
the correct one for complexes which may have a lower symmetry. Coordination
geometries where such a check is vital are those for metalcomplexes
with Jahn–Teller distorted-octahedral and capped-trigonal-prismaticconfigurations.
Structure of the Solvated Copper(II) Ion
in Methanol and Six Amide Solvents Studied by EXAFS
The structure
of the solvated copper(II) ion in methanol, dmf, def, dma, dea, dmp,
and dep show the same pattern as in water with four solvent molecules
in the equatorial positions at ca. 1.96 Å and two significantly
different axial Cu–O bond distances. No homolepticcopper(II)methanol solvate has been reported in the solid state,[4] and only four copper(II)complexes with four bound methanol
molecules have been reported.[67−70] The mean Cu–Oeq bond distance in
the methanol-solvated copper(II) ion in solution has been refined
to 1.975(4) Å, and the Cu–Oax bond distances
have been refined to 2.202(8) and 2.34(1) Å. The mean Cu···C
distance and the Cu–Oeq–C three-legged scattering
path were refined to 3.03(2) and 3.18(4) Å, respectively, which
corresponds to a Cu–O–C bond angle of 128(2)°,
assuming a O–C bond distance of 1.39 Å, which is in full
agreement with the bond angles in the reported solid solvates.[67−70] Zitolo and D’Angelo have reported an EXAFS and MXAN analysis
of the methanol solvated copper(II) ion in solution. They tested two
models, a tetragonally elongated square-pyramidal and a centrosymmetric
Jahn–Teller distorted-octahedral configuration, showing that
the tetragonally elongated square pyramid did fit best with a mean
Cu–Oeq bond distance of 1.98 Å, a Cu–Oax distance of 2.27 Å, and a mean Cu–Oeq–C bond angle of 129.5°.[26] They reported also that the dimethyl sulfoxide and acetonitrile
solvated copper(II) ions also have a tetragonally elongated square-pyramidal
configuration in solution.[26,27]Six structures
of solid compounds containing a hexakis(dmf)copper(II) ion have been
reported, three of which display a Jahn–Teller distorted-octahedral
configuration,[71−73] while the other three have an irregular octahedral
geometry.[74−76] The mean Cu–Oeq bond distance in
the dmf-solvated copper(II) ion in dmf solution has been refined to
1.963(3) Å, and the Cu–O bond distances in the axial positions
have been refined to 2.178(8) and 2.33(1) Å. The Cu···C
distance and the Cu–O–C three-legged scattering path
have been refined to 2.855(7) and 3.03(2) Å, respectively, which
corresponds to a Cu–O–C bond angle of 124(1)°,
assuming a O=C bond distance of 1.25 Å, which is in full
agreement with the bond angles in the reported structures containing
hexakis(dmf)copper(II) ions.[71−76]No structures of any hexacoordinate copper(II)complex with
the remaining amide solvents used in this study have been reported.[4] In the structure of tetrakis(dma)copper(II) perchlorate,
four dma molecules are bound in the equatorial positions, and perchlorate
oxygensare present in the axial positions at long distance but shorter
than the van der Waals radii of copper and oxygen.[37,77] The results of the EXAFS studies of the def-, dma-, dea-, dmp-,
and dep-solvated copper(II) ion in the respective solvents are fully
in line with the results obtained in dmf. The fit of raw EXAFS data
and Fourier transforms are shown in Figures and 5, respectively,
and the refined structure parameters are given in Table . The Cu–Oeq bond distances in the dmf- and def-solvated copper(II) ions are
slightly longer than in the dma, dea, dmp, and depcopper(II) solvates
(Table ). The Cu–O–C
angles in the dmf and defcopper(II) solvates, 124(1)°, are significantly
smaller than the dma, dea, dmp and dep angles, 130(1)° (Table ). This pattern is
also seen in the solid structures of dmf- and dma-solvated copper(II)
ions with mean Cu–O–C bond angles of 124.5 and 129.6°,
respectively.[71−77] With an alkyl group binding to the amidecarbon, the electron density
on the oxygen becomes slightly smaller and the binding character slightly
more electrostatic in comparison to formamides with a hydrogen binding
to the amidecarbon. The fits of raw EXAFS data and the Fourier transform
of the methanol and amide solvent copper(II) solvates are shown in Figures and 5, respectively, and the refined structure parameters are given
in Table .
Figure 4
Fit of raw EXAFS data
of copper(II) trifluoromethanesulfonate in (a) N,N-dimethylpropylene urea (dmpu, offset +18), (b) N,N,N’N’-tetramethylurea (tmu, offset +16), (c) N,N-diethylpropionamide
(dep, offset +14), (d) N,N-dimethylpropionamide (dmp,
offset +12), (e) N,N-diethylacetamide (dea, offset
+10), (f) N,N-dimethylacetamide (dma, offset +8),
(g) N,N-diethylformamide (def, offset +6), (h) N,N-dimethylformamide (dmf, offset +4), (i) methanol (offset
+2), and (j) aqueous solution acidified with trifluoromethanesulfonic
acid.
Figure 5
Fit of Fourier transforms of EXAFS data of (a) N,N-dimethylpropylene urea (dmpu, offset +1.8), (b) N,N,N′,N′-tetramethylurea (tmu, offset +1.6),
(c) N,N-diethylpropionamide (dep, offset +1.4), (d) N,N-dimethylpropionamide (dmp, offset +1.2), (e) N,N-diethylacetamide (dea, offset +1.0), (f) N,N-dimethylacetamide (dma, offset +0.8), (g) N,N-diethylformamide
(def, offset +0.6), (h) N,N-dimethylformamide (dmf,
offset + 0.4), (i) methanol (offset +0.2), and (j) aqueous solution
acidified with trifluoromethanesulfonic acid.
Table 3
Summary of Refinements of EXAFS Data Using a Noncentrosymmetric
Tetragonally Elongated Octahedral Geometry of the Solvated Copper(II)
ion in Water (aq), Methanol (M), N,N-Dimethylformamide
(dmf), N,N-Dimethylacetamide (dma), N,N-Dimethylpropionamide (dmp), N,N-Diethylformamide (def), N,N-Dimethylacetamide(dea), N,N-Dimethylpropionamide (dep), N,N′-Dimethylpropyleneurea (dmpu), and N,N,N′,N′-Tetramethylurea (tmu)a
water
methanol
dmf
def
dma
dea
dmp
dep
dmpu
tmu
d(Cu–Oeq)
1.957(3)
1.975(3)
1.963(3)
1.967(3)
1.956(3)
1.956(3)
1.952(3)
1.951(3)
1.939(3)
1.935(3)
σ2(Cu–Oeq)
0.0055(3)
0.0064(3)
0.0061(3)
0.0058(3)
0.0060(3)
0.0061(3)
0.0062(3)
0.0058(3)
0.0057(3)
0.0060(3)
n(Cu–Oeq)
4
4
4
4
4
4
4
4
4
4
d(Cu–Oax1)
2.14(2)
2.202(8)
2.178(8)
2.186(3)
2.14(1)
2.17(1)
2.16(3)
2.11(4)
σ2(Cu–Oax1)
0.007(2)
0.0069(8)
0.0068(8)
0.007(1)
0.007(2)
0.007(2)
0.011(2)
0.014(4)
n(Cu–Oax1)
1
1
1
1
1
1
1
1
d(Cu–Oax2)
2.32(2)
2.34(1)
2.33(1)
2.34(1)
2.32(2)
2.34(2)
2.30(4)
2.27(4)
σ2(Cu–Oax2)
0.009(2)
0.007(2)
0.008(1)
0.007(2)
0.010(2)
0.014(3)
0.014(5)
0.013(5)
n(Cu–Oax2)
1
1
1
1
1
1
1
1
d(MS(CuO4))
3.914
3.951
3.926
3.935
3.912
3.913
3.904
3.902
3.878
3.870
σ2(MS(CuO4))
0.012(3)
0.011(3)
0.012(2)
0.012(2)
0.009(3)
0.009(2)
0.011(4)
0.009(4)
0.009(3)
0.014(5)
n(MS(CuO4))
3*4
3*4
3*4
3*4
3*4
3*4
3*4
3*4
3*4
3*4
d(Cu–C)
3.03(2)
2.855(7)
2.859(9)
2.93(1)
2.92(1)
2.94(1)
2.94(1)
2.85(1)
2.91(2)
σ2(Cu–C)
0.013(2)
0.009(4)
0.009(1)
0.011(1)
0.011(1)
0.012(1)
0.011(2)
0.014(2)
0.013(3)
n(Cu–C)
4
4
4
4
4
4
4
4
4
d(Cu–O–C)
3.18(4)
3.03(2)
3.03(3)
3.07(2)
3.06(2)
3.07(1)
3.08(1)
3.02(4)
3.09(1)
σ2(Cu–O–C)
0.026(5)
0.011(3)
0.013(2)
0.010(1)
0.011(2)
0.010(1)
0.009(1)
0.009(2)
0.011(1)
n(Cu–O–C)
8
8
8
8
8
8
8
8
8
∠Cu–O–C
127.9(5)
123.9(3)
123.9(3)
130.9(4)
130.3(4)
132.2(6)
131.8(6)
d(Cu–N)
3.99(1)
3.99(2)
4.00(2)
4.01(2)
4.01(2)
4.01(3)
σ2(Cu–N)
0.009(4)
0.010(2)
0.010(2)
0.010(2)
0.009(3)
0.010(3)
n(Cu–N)
4
4
4
4
4
4
d(Cu–N–C)
4.27(4)
4.29(4)
4.24(5)
4.25(4)
4.24(7)
4.22(6)
σ2(Cu–N–C)
0.006(4)
0.006(4)
0.012(5)
0.012(4)
0.015(9)
0.012(7)
n(Cu–N–C)
8
8
8
8
8
8
S02
0.93(4)
1.09(4)
1.10(4)
1.07(4)
1.09(4)
1.10(4)
1.10(4)
0.95(5)
0.92(3)
0.97(4)
E0
8989.7(5)
8990.0(5)
8989.8(5)
8991.1(5)
8989.9(5)
8988.9(5)
8989.5(5)
8989.5(5)
8988.2(5)
8987.3(5)
F
18.14
18.26
16.13
19.73
14.95
12.91
17.09
16.80
20.93
23.85
Definitions: distance; d/Å, Debye–Waller
coefficient, σ2/Å2; number of distances, n; amplitude reduction factor, S02; threshold energy, E0/eV;
weighted F factor, F. Estimated
errors within parentheses includes the statistical errors from the
refinements and estimated experimental errors. Parameters without
following parentheses have been fixed.
The linear multiple scattering distance with in the CuO4 equatorial plane has been linked to the Cu–O bond
distance.
Definitions: distance; d/Å, Debye–Waller
coefficient, σ2/Å2; number of distances, n; amplitude reduction factor, S02; threshold energy, E0/eV;
weighted F factor, F. Estimated
errors within parentheses includes the statistical errors from the
refinements and estimated experimental errors. Parameters without
following parentheses have been fixed.The linear multiple scattering distance with in the CuO4 equatorial plane has been linked to the Cu–O bond
distance.Fit of raw EXAFS data
of copper(II) trifluoromethanesulfonate in (a) N,N-dimethylpropyleneurea (dmpu, offset +18), (b) N,N,N’N’-tetramethylurea (tmu, offset +16), (c) N,N-diethylpropionamide
(dep, offset +14), (d) N,N-dimethylpropionamide (dmp,
offset +12), (e) N,N-diethylacetamide (dea, offset
+10), (f) N,N-dimethylacetamide (dma, offset +8),
(g) N,N-diethylformamide (def, offset +6), (h) N,N-dimethylformamide (dmf, offset +4), (i) methanol (offset
+2), and (j) aqueous solution acidified with trifluoromethanesulfonic
acid.Fit of Fourier transforms of EXAFS data of (a) N,N-dimethylpropyleneurea (dmpu, offset +1.8), (b) N,N,N′,N′-tetramethylurea (tmu, offset +1.6),
(c) N,N-diethylpropionamide (dep, offset +1.4), (d) N,N-dimethylpropionamide (dmp, offset +1.2), (e) N,N-diethylacetamide (dea, offset +1.0), (f) N,N-dimethylacetamide (dma, offset +0.8), (g) N,N-diethylformamide
(def, offset +0.6), (h) N,N-dimethylformamide (dmf,
offset + 0.4), (i) methanol (offset +0.2), and (j) aqueous solution
acidified with trifluoromethanesulfonic acid.
Test of Different Models in the Refinements of EXAFS Data
The refined structure parameters of the solvated copper(II) ions
using three models, a tetragonally elongated square pyramid and centrosymmetric
and noncentrosymmetric tetragonally elongated octahedra, need to be
compared. The solid compounds have all a well-defined composition,
which suggests that a five-coordinate complex can be excluded. A comparison
of the two Jahn–Teller distorted models shows that the mean
Cu–Oax bond distance in the centrosymmetric model
becomes fairly close to the average of the two Cu–Oax bond distances in the noncentrosymmetric model (Table and Table S6). Furthermore, the Debye–Waller coefficients, σ2, become unreasonably large, strongly indicating that the
distance consists of at least two separated distances. Applying the
noncentrosymmetric model with two well-separated Cu–Oax bond distances results in the refined Debye–Waller coefficients
are within the expected values for bond distances of this kind, 0.005–0.009
Å–1. This strongly indicates that the Cu–Oax bond distances in the studied solid hydrates and solvates
are different and are well separated with a difference of 0.15–0.20
Å (Tables and 3).For the studied solutions the tetragonally
elongated square-pyramidal model has to be included as well in this
comparison. Applying the centrosymmetric octahedral model results
in very large Debye–Waller coefficients for the Cu–Oax bond distances as found in the solid hydrate samples discussed
above (Table S8a). When the square-pyramidal
model is applied, the Cu–Oax bond distance becomes
close to the value obtained by using the centrosymmetric octahedral
model but the Debye–Waller coefficients becomes significantly
smaller, 0.009–0.014 Å2 (Table S8b), but still of an order indicating a wide bond distance
distribution for a single bond.The pattern of bond distances
and Debye–Waller coefficients and the fact that the EXAFS spectra
of solid [Cu(H2O)6](ClO4)2, Cu(NO3)2·2.5H2O, [Cu(H2O)6](BrO3)2, and [Cu(H2O)6]SiF6 and the aqueous solutions of
copper(II) superimpose (Figure ) strongly indicate the hydrated copper(II) ion and the solvated
copper(II) ion in methanol and the six amide solvents bind six solvent
molecules in a noncentrosymmetric tetragonally elongated octahedral
geometry. This model is in full agreement with the observation using
EPR that the hydrated copper(II) ion is noncentrosymmetric in aqueous
solution[6,7] and is in full agreement with the EXAFS
studies reported by Frank et al.[13,22,25] The survey of structure determinations of solid compounds
containing a hexaaquacopper(II) ion or a pentaaqua(O-ligand)copper(II)complex described in the Introduction strongly
indicates that individual copper(II)complexes in fact are six-coordinate
and noncentrosymmetric. It is therefore very important to apply a
non-lattice-dependent method such as EXAFS to determine the structures
of such compounds.
Structure of the Solvated Copper(II) Ion
in dmpu and tmu Studied by EXAFS
In the solvents which are
space demanding upon coordination, dmpu and tmu, the axial positions
are protected by the ligands in the equatorial positions (see below),
resulting in square-planarcomplexes. It was not possible to locate
any more solvent molecules within a reasonable bond distance. The
Cu–O bond distances in the dmpu- and tmu-solvated copper(II)
ions are significantly shorter, 1.939(3) and 1.935(3) Å, respectively,
than the shortest Cu–Oeq bond distances in the hexasolvated
copper(II) ions, 1.954(3) Å, for acetamide and propionamide (Table ) but are in agreement
with four-coordinated copper(II)complexes with oxygen donor ligands
(Table S3). The copper(II) trifluoromethanesulfonate
solutions in dmpu and tmu have an intense dark green color due to
a strong absorption band in the UV region and another at around 800
nm, both tailing into the visible region (Figure S1).
Structure of the dmpu-Solvated Copper(II)
Ion in dmpu Solution Studied by LAXS
The radial distribution
function of a LAXS study of a 0.8 mol dm–3 copper(II)trifluoromethanesulfonate solution shows a peak just below 2 Å
assigned to the Cu–O bond distance and refined to 1.93(2) Å
(Figure ). The LAXS
model used includes interatomic interactions between the copper(II)
ion and the solvating ligands and interactions within the solvent
molecules and within the anions.
Figure 6
(Top) LAXS radial distribution curves
for a 0.8 mol dm–3 copper(II) trifluoromethanesulfonate
dmpu (top) separate model contributions (offset 14) of the tetrakis(dmpu)copper(II)
complex (solid line), the trifluoromethanesulfonate ion (dashed line),
and dmpu solvent (dotted line); (middle) experimental RDF with D(r) −4pr2ρ0 (solid line), sum of model contributions (dashed
line), and difference (dotted line); (bottom) reduced LAXS intensity
functions s.i(s) (thin line) and model s.icalc(s) (thick line).
(Top) LAXS radial distribution curves
for a 0.8 mol dm–3 copper(II) trifluoromethanesulfonatedmpu (top) separate model contributions (offset 14) of the tetrakis(dmpu)copper(II)
complex (solid line), the trifluoromethanesulfonate ion (dashed line),
and dmpu solvent (dotted line); (middle) experimental RDF with D(r) −4pr2ρ0 (solid line), sum of model contributions (dashed
line), and difference (dotted line); (bottom) reduced LAXS intensity
functions s.i(s) (thin line) and model s.icalc(s) (thick line).
Crystal Structure of [Cu(dmpu)4](CF3SO3)2·dmpu (1)
The crystal
structure of 1 consists of tetrakis(N,N’-dimethylpropyleneurea)copper(II) and trifluoromethanesulfonate ions,
and with an additional noncoordinated N,N′-dimethylpropyleneurea molecule in the lattice. The almost planardmpu molecules are stacked perpendicular to the equatorial plane with
two crystallographically independent ligands having Cu–O bond
distances of 1.900(3) and 1.902(3) Å, with Cu–O–C
angles of 127.3(3) and 129.5(3)°, respectively, forming a regular
square-planarcoordination (Figure ). The low quality of the crystal made it necessary
to add additional loose structural restraints to obtain sound results.
For both of the ligand molecules, it was possible to refine two alternate
positions, C14A/B and C24A/B, for the middle propylenecarbon with
partial occupancies at 73/27 and 53/47%, respectively, whereas the
other ligand molecule showed the typical half-chair formation partial
distribution refinement of its carbon, C14. The copper(II) methyl
carbon distances Cu–Care approximately 3.7(1) Å, at roughly
45° from the flat CuO4 plane. Bond distances and angles
in the trifluoromethanesulfonate ions are in agreement with those
in previous studies, but due to disorder alternative positions were
added.[4] The noncoordinated dmpuoxygen
is 7.8 Å away from the copper(II) ion. Selected crystallographic
data are given in Table , and selected bond distances and angles are given in Table . By a view perpendicular to
the CuO4 plane of the tetrakis(N,N’-dimethylpropyleneurea)copper(II) ion it is clearly seen that the
dmpu methyl groups effectively hinder access of ligands to the axial
positions. Furthermore, the methyl groups near the axial position
have no bonding properties to the copper(II) ion.
Figure 7
Structure of the tetrakis(dmpu)copper(II)
unit in 1. Ellipsoids for all non-hydrogen atoms are
set at 40% probability.
Table 4
Selected
Bond Distances (Å) and Angles (deg) from the Crystal Structure
Determination of Solid [Cu(dmpu)4](CF3SO3)2·dmpu
bond
distance
bond angle
Cu–O1
1.900(3)
O1–Cu–O2
90.15(14)
Cu–O2
1.902(3)
O1–Cu–O2′
89.86(14)
Structure of the tetrakis(dmpu)copper(II)
unit in 1. Ellipsoids for all non-hydrogen atoms are
set at 40% probability.
Summary of the Coordination Chemistry of the Hydrated and Solvated
Copper(II) Ions
Even though a large majority of the hexaaquacopper(II)complexes reported in the solid state are found to be centrosymmetric
(Table S1), it has not been possible to
confirm this with the lattice-independent EXAFS method in this study.
It therefore seems very likely that the direction of the short and
long axial Cu–O bond distances can be randomly distributed
in solid compounds, resulting in a mean structure with higher symmetry
in comparison to the symmetry of the individual complexes. This seems
also to be the case for hexaaquacopper(II) ions reported to have a
regular or somewhat irregular octahedral geometry, as some of these
have been shown to have the expected Jahn–Teller distortion
(vide supra). Of the complexes without a center of
symmetry or with the center of symmetry not on copper in the [Cu(H2O)6]2+ complex, only a few display almost
similarCu–Oax distances, while the remaining structures
display significant different Cu–Oax distances (Table S1). Furthermore, all reported [Cu(H2O)5(O-donor ligand)] complexes with Jahn–Teller
distortion display significantly different Cu–Oax distances independent of whether the O-donor ligand is in equatorial
or axial position (Table S2). The high k range EXAFS data collected in this study and by Frank
et al.[22] allows a high resolution of distances.
Using a model with two different axial Cu–Oax bond
distances resulted in stable refinements independent of the system.
This includes all solvents where copper(II) is six-coordinate, all
studied solvents except tmu and dmpu, and the solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2, [Cu(H2O)6]SiF6, Cu(NO3)2·2.5H2O, and CuSO4·5H2O. The similar UV–vis
spectra of the hydrated copper(II) ion in aqueous solution and the
solvated copper(II) ion in methanol, dmf, def, dma, dea, dmp, and
dep further support a similarconfiguration (Figure S1).
Conclusions
The structure of the
solvated copper(II) ion in 10 oxygen donor solvents with similar bonding
characteristics but with different space-demanding properties on coordination
have been studied by EXAFS spectroscopy. In the solvents with large
space-demanding properties on coordination, dmpu and tmu, copper(II)
is shown to have a square-planarconfiguration with mean Cu–O
bond distances of 1.93(2) Å. The best fits in the other solvents
are obtained with a noncentrosymmetric tetragonally elongated octahedral
model with different axial Cu–O bond distances with mean Cu–Oeq, Cu–Oax1, and Cu–Oax2 bond distances of ca. 1.96, 2.15, and 2.32 Å, respectively.
This model is in full agreement with that proposed by Frank et al.
for the hydrated copper(II) ion from EXAFS studies.[13,22,25] However, from the point-of-view of EXAFS
data other configurations such as tetragonally elongated square pyramidal
cannot be ruled out. EPR studies have shown that the hydrated copper(II)
ion in aqueous solution is noncentrosymmetric.[7,8] A
large number of number of theoretical simulations have concluded that
[Cu(H2O)5]2+ and [Cu(H2O)5···H2O]2+ configurations
are more stable in aqueous solution in comparison to the centrosymmetric
Jahn–Teller distorted-octahedral configuration.[11,12,15,16,21,23] An in-depth
survey of solid-state structures containing isolated hydrated copper(II)
ions has shown that hexaaquacopper(II)complexescrystallizing in
noncentrosymmetric space groups as well as in centrosymmetric space
groups where the center of symmetry is not on the copper in the [Cu(H2O)6]2+ ion display significantly different
Cu–O bond distances in the axial positions (Table S1). Furthermore, all of the [Cu(H2O)5(O-ligand)] complexes displaying Jahn–Teller distortion
show the same splitting in the Cu–Oax bond distances
independent of the position of the O-ligand (Table S2). EXAFS spectra of aqueous copper(II) solutions and the
solids [Cu(H2O)6](ClO4)2, [Cu(H2O)6](BrO3)2,
and [Cu(H2O)6]SiF6 are superimposable,
strongly indicating that the hydrated copper(II) ions in these salts
have the same or very similarconfigurations around copper as in aqueous
solution. This is in spite of the fact that the crystallographic studies
report centrosymmetric structures with a regular octahedral configuration
for the last two complexes. This strongly indicates that copper(II)complexes reported to be centrosymmetric in the solid state are mean
structures of noncentrosymmetric entities with random orientation
of the copper(II)complex in the individual unit cells. A summary
of the present information from different methods and publications
is as follows.The hydrated
copper(II) ion in aqueous solution is six-coordinate with a noncentrosymmetric
tetragonally elongated octahedral geometry, and the difference in
the Cu–Oax bond distances is on the order of 0.2
Å,The solvated copper(II) ion in
the seven organicoxygen donor solvents without steric demands on
coordination have the same configuration in solution as that of the
hydrated copper(II) ion.The solvated
copper(II) ion has a four-coordinate square-planarconfiguration in
space-demanding solvents on coordination, as the axial positions become
inaccessible.It seems very likely that
all six-coordinate copper(II)complexes reported to be centrosymmetric
in the solid state have a noncentrosymmetric tetragonally elongated
octahedral configuration with a random orientation of at least the
axial ligands, but as crystallography gives the mean of all unit cells
in the solid, the mean structure becomes centrosymmetric.
Authors: Christina M. V. Stålhandske; Ingmar Persson; Magnus Sandström; Ewa Kamienska-Piotrowicz Journal: Inorg Chem Date: 1997-07-02 Impact factor: 5.165
Authors: Pushparani Micheal Raj; Laurent Barbe; Martin Andersson; Milena De Albuquerque Moreira; Dörthe Haase; James Wootton; Susan Nehzati; Ann E Terry; Ross J Friel; Maria Tenje; Kajsa G V Sigfridsson Clauss Journal: RSC Adv Date: 2021-09-07 Impact factor: 4.036
Authors: Kirill K Geyl; Sergey V Baykov; Stanislav A Kalinin; Alexandr S Bunev; Marina A Troshina; Tatiana V Sharonova; Mikhail Yu Skripkin; Svetlana O Kasatkina; Sofia I Presnukhina; Anton A Shetnev; Mikhail Yu Krasavin; Vadim P Boyarskiy Journal: Biomedicines Date: 2022-02-16