Literature DB >> 23822310

Dynamics of ligand exchange mechanism at Cu(II) in water: an ab initio quantum mechanical charge field molecular dynamics study with extended quantum mechanical region.

Syed Tarique Moin1, Thomas S Hofer, Alexander K H Weiss, Bernd M Rode.   

Abstract

Ab initio quantum mechanical charge field molecular dynamics (QMCF-MD) were successfully applied to Cu(II) embedded in water to elucidate structure and to understand dynamics of ligand exchange mechanism. From the simulation studies, it was found that using an extended large quantum mechanical region including two shells of hydration is required for a better description of the dynamics of exchanging water molecules. The structural features characterized by radial distribution function, angular distribution function and other analytical parameters were consistent with experimental data. The major outcome of this study was the dynamics of exchange mechanism and reactions in the first hydration shell that could not be studied so far. The dynamical data such as mean residence time of the first shell water molecules and other relevant data from the simulations are close to the results determined experimentally. Another major characteristic of hydrated Cu(II) is the Jahn-Teller distortion which was also successfully reproduced, leading to the final conclusion that the dominating aqua complex is a 6-coordinated species. The ab initio QMCF-MD formalism proved again its capabilities of unraveling even ambiguous properties of hydrated species that are far difficult to explore by any conventional quantum mechanics/molecular mechanics (QM/MM) approach or experiment.

Entities:  

Year:  2013        PMID: 23822310     DOI: 10.1063/1.4811114

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  An Angular Overlap Model for Cu(II) Ion in the AMOEBA Polarizable Force Field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2014       Impact factor: 6.006

2.  Calculations of hyperfine coupling constant of copper(II) in aqueous environment. Finite temperature molecular dynamics and relativistic effects.

Authors:  Michal Malček; Lukáš Bučinský; Marián Valko; Stanislav Biskupič
Journal:  J Mol Model       Date:  2015-08-18       Impact factor: 1.810

3.  [Cu(aq)]2+ is structurally plastic and the axially elongated octahedron goes missing.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyum
Journal:  J Chem Phys       Date:  2018-05-28       Impact factor: 3.488

4.  EXAFS Study on the Coordination Chemistry of the Solvated Copper(II) Ion in a Series of Oxygen Donor Solvents.

Authors:  Ingmar Persson; Daniel Lundberg; Éva G Bajnóczi; Konstantin Klementiev; Justus Just; Kajsa G V Sigfridsson Clauss
Journal:  Inorg Chem       Date:  2020-07-02       Impact factor: 5.165

  4 in total

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