Literature DB >> 19283268

Conformations, structural transitions and visible near-infrared absorption spectra of four-, five- and six-coordinated Cu(II) aqua complexes.

Katia Júlia de Almeida1, N Arul Murugan, Zilvinas Rinkevicius, Håkan Wilhelm Hugosson, Olav Vahtras, Hans Agren, Amary Cesar.   

Abstract

We have performed Car-Parrinello molecular dynamics simulations at ambient conditions for four-, five- and six-coordinated Cu(II) aqua complexes. The molecular geometry has been investigated in terms of Cu-O, Cu-H bond lengths and O-Cu-O bond angles and compared with earlier experimental measurement results and theoretical calculations. We find that the average Cu-O and Cu-H bond lengths increase with increasing coordination number. We have also observed relatively faster structural transition in the case of five-coordinated complex between trigonal bipyramidal and square pyramidal geometry. This result deviates from the findings of the earlier report (A. Pasquarello et al., Science, 2001, 291, 856) on copper(II) in aqueous solution and we attribute these differences to the neglect of solvent environment in our calculations. The averaged absorption spectra for the copper(II) aqua complexes have been computed using spin-restricted density functional linear response formalism taking 100 snap shots from a trajectory of 0.48 ps. We find that the calculated spectra are significantly different, showing clear features that distinguish each coordination model. Comparison with the experimentally reported absorption spectra is made wherever it is possible and the results obtained favor the distorted fivefold-coordination arrangement for the molecular structure of the Cu(II) ion in aqueous solution.

Entities:  

Year:  2008        PMID: 19283268     DOI: 10.1039/b806423g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  8 in total

1.  Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations.

Authors:  Haiyun Jin; Puja Goyal; Akshaya Kumar Das; Michael Gaus; Markus Meuwly; Qiang Cui
Journal:  J Phys Chem B       Date:  2015-12-17       Impact factor: 2.991

2.  An Angular Overlap Model for Cu(II) Ion in the AMOEBA Polarizable Force Field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2014       Impact factor: 6.006

3.  Calculations of hyperfine coupling constant of copper(II) in aqueous environment. Finite temperature molecular dynamics and relativistic effects.

Authors:  Michal Malček; Lukáš Bučinský; Marián Valko; Stanislav Biskupič
Journal:  J Mol Model       Date:  2015-08-18       Impact factor: 1.810

4.  A valence bond model for aqueous Cu(II) and Zn(II) ions in the AMOEBA polarizable force field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Comput Chem       Date:  2012-12-05       Impact factor: 3.376

5.  [Cu(aq)]2+ is structurally plastic and the axially elongated octahedron goes missing.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyum
Journal:  J Chem Phys       Date:  2018-05-28       Impact factor: 3.488

6.  EXAFS Study on the Coordination Chemistry of the Solvated Copper(II) Ion in a Series of Oxygen Donor Solvents.

Authors:  Ingmar Persson; Daniel Lundberg; Éva G Bajnóczi; Konstantin Klementiev; Justus Just; Kajsa G V Sigfridsson Clauss
Journal:  Inorg Chem       Date:  2020-07-02       Impact factor: 5.165

7.  Ionization Energies and Redox Potentials of Hydrated Transition Metal Ions: Evaluation of Domain-Based Local Pair Natural Orbital Coupled Cluster Approaches.

Authors:  Sinjini Bhattacharjee; Miho Isegawa; Miquel Garcia-Ratés; Frank Neese; Dimitrios A Pantazis
Journal:  J Chem Theory Comput       Date:  2022-02-22       Impact factor: 6.006

8.  Changes in active-site geometry on X-ray photoreduction of a lytic polysaccharide monooxygenase active-site copper and saccharide binding.

Authors:  Tobias Tandrup; Sebastian J Muderspach; Sanchari Banerjee; Gianluca Santoni; Johan Ø Ipsen; Cristina Hernández-Rollán; Morten H H Nørholm; Katja S Johansen; Flora Meilleur; Leila Lo Leggio
Journal:  IUCrJ       Date:  2022-08-17       Impact factor: 5.588

  8 in total

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