Literature DB >> 14562438

New insights into the Jahn-Teller effect through ab initio quantum-mechanical/molecular-mechanical molecular dynamics simulations of CuII in water.

Christian F Schwenk1, Bernd M Rode.   

Abstract

The CuII hydration shell structure has been studied by means of classical molecular dynamics (MD) simulations including three-body corrections and hybrid quantum-mechanical/molecular-mechanical (QM/MM) molecular dynamics (MD) simulations at the Hartree-Fock level. The copper(II) ion is found to be six-fold coordinated and [Cu(H2O)6]2+ exhibits a distorted octahedral structure. The QM/MM MD approach reproduces correctly the experimentally observed Jahn-Teller effect but exhibits faster inversions (< 200 fs) and a more complex behaviour than expected from experimental data. The dynamic Jahn-Teller effect causes the high lability of [Cu(H2O)6]2+ with a ligand-exchange rate constant some orders or magnitude higher than its neighbouring ions NiII and ZnII. Nevertheless, no first-shell water exchange occurred during a 30-ps simulation. The structure of the hydrated ion is discussed in terms of radial distribution functions, coordination numbers, and various angular distributions and the dynamical properties as librational and vibrational motions and reorientational times were evaluated, which lead to detailed information about the first hydration shell. Second-shell water-exchange processes could be observed within the simulation time scale and yielded a mean ligand residence time of approximelty 20 ps.

Entities:  

Year:  2003        PMID: 14562438     DOI: 10.1002/cphc.200300659

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  8 in total

1.  Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations.

Authors:  Haiyun Jin; Puja Goyal; Akshaya Kumar Das; Michael Gaus; Markus Meuwly; Qiang Cui
Journal:  J Phys Chem B       Date:  2015-12-17       Impact factor: 2.991

2.  A high-resolution XAS study of aqueous Cu(II) in liquid and frozen solutions: pyramidal, polymorphic, and non-centrosymmetric.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyam; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2015-02-28       Impact factor: 3.488

3.  Synthesis and crystal structures of novel copper(II) complexes with glycine and substituted phenanthrolines: reactivity towards DNA/BSA and in vitro cytotoxic and antimicrobial evaluation.

Authors:  Duygu İnci; Rahmiye Aydın; Özgür Vatan; Tuba Sevgi; Dilek Yılmaz; Yunus Zorlu; Yusuf Yerli; Bünyemin Çoşut; Elif Demirkan; Nilüfer Çinkılıç
Journal:  J Biol Inorg Chem       Date:  2016-11-10       Impact factor: 3.358

4.  Development and validation of a ReaxFF reactive force field for Cu cation/water interactions and copper metal/metal oxide/metal hydroxide condensed phases.

Authors:  Adri C T van Duin; Vyacheslav S Bryantsev; Mamadou S Diallo; William A Goddard; Obaidur Rahaman; Douglas J Doren; David Raymand; Kersti Hermansson
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

5.  Calculations of hyperfine coupling constant of copper(II) in aqueous environment. Finite temperature molecular dynamics and relativistic effects.

Authors:  Michal Malček; Lukáš Bučinský; Marián Valko; Stanislav Biskupič
Journal:  J Mol Model       Date:  2015-08-18       Impact factor: 1.810

6.  [Cu(aq)]2+ is structurally plastic and the axially elongated octahedron goes missing.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyum
Journal:  J Chem Phys       Date:  2018-05-28       Impact factor: 3.488

7.  EXAFS Study on the Coordination Chemistry of the Solvated Copper(II) Ion in a Series of Oxygen Donor Solvents.

Authors:  Ingmar Persson; Daniel Lundberg; Éva G Bajnóczi; Konstantin Klementiev; Justus Just; Kajsa G V Sigfridsson Clauss
Journal:  Inorg Chem       Date:  2020-07-02       Impact factor: 5.165

8.  Effects of MN4-Type Coordination Structure in Metallophthalocyanine for Bio-Inspired Oxidative Desulfurization Performance.

Authors:  Gai Zhang; Yufan Zhang; Amin Tan; Yan Yang; Min Tian
Journal:  Molecules       Date:  2022-01-28       Impact factor: 4.411

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.