Literature DB >> 32584038

Structural Dynamics by NMR in the Solid State: The Unified MOMD Perspective Applied to Organic Frameworks with Interlocked Molecules.

Eva Meirovitch1, Zhichun Liang2, Jack H Freed2.   

Abstract

The microscopic-order-macroscopic-disorder (MOMD) approach for NMR lineshape analysis has been applied to the University of Windsor Dynamic Materials (UWDM) of types 1, 2, α-3, β-3, and 5, which are metal-organic frameworks (MOFs) comprising mobile mechanically interlocked molecules (MIMs). The mobile MIM components are selectively deuterated crown ether macrocycles - 24C6, 22C6, and B24C6. Their motion is described in MOMD by an effective/collective dynamic mode characterized by a diffusion tensor, R, a restricting/ordering potential, u, expanded in the Wigner rotation matrix elements, D0, KL, and features of local geometry. Experimental 2H lineshapes are available over 220 K (on average) and in some cases 320 K. They are reproduced with axial R, u given by the terms D0,02 and D0,|2|2, and established local geometry. For UWDM of types 1, β-3, and 5, where the macrocycle resides in a relatively loose space, u is in the 1-3 kT, R∥ in the (1.0-2.5) × 106 s-1, and R⊥ in the (0.4-2.5) × 104 s-1 range; the deuterium atom is bonded to a carbon atom with tetrahedral coordination character. For UWDM of types 2 and α-3, where the macrocycle resides in a much tighter space, a substantial change in the symmetry of u and the coordination character of the 2H-bonded carbon are detected at higher temperatures. The activation energies for R∥ and R⊥ are characteristic of each system. The MOMD model is general; effective/collective dynamic modes are treated. The characteristics of motion, ordering, and geometry are physically well-defined; they differ from case to case in extent and symmetry but not in essence. Physical clarity and consistency provide new insights. A previous interpretation of the same experimental data used models consisting of collections of independent simple motions. These models are specific to each case and temperature. Within their scope, generating consistent physical pictures and comparing cases are difficult; possible collective modes are neglected.

Entities:  

Mesh:

Year:  2020        PMID: 32584038      PMCID: PMC7666760          DOI: 10.1021/acs.jpcb.0c03687

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  22 in total

1.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

2.  Reducing bias in the analysis of solution-state NMR data with dynamics detectors.

Authors:  Albert A Smith; Matthias Ernst; Beat H Meier; Fabien Ferrage
Journal:  J Chem Phys       Date:  2019-07-21       Impact factor: 3.488

3.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

4.  Stochastic modeling of macromolecules in solution. II. Spectral densities.

Authors:  Antonino Polimeno; Mirco Zerbetto; Daniel Abergel
Journal:  J Chem Phys       Date:  2019-05-14       Impact factor: 3.488

5.  Stochastic modeling of macromolecules in solution. I. Relaxation processes.

Authors:  Antonino Polimeno; Mirco Zerbetto; Daniel Abergel
Journal:  J Chem Phys       Date:  2019-05-14       Impact factor: 3.488

6.  Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  Solid State Nucl Magn Reson       Date:  2017-11-21       Impact factor: 2.293

7.  Characterization of leucine side-chain reorientation in collagen-fibrils by solid-state 2H NMR.

Authors:  L S Batchelder; C E Sullivan; L W Jelinski; D A Torchia
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

8.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

9.  Effects of jump dynamics on solid state nuclear magnetic resonance line shapes and spin relaxation times.

Authors:  Robert L Vold; Gina L Hoatson
Journal:  J Magn Reson       Date:  2009-01-19       Impact factor: 2.229

10.  Thermally Driven Dynamics of a Rotaxane Wheel about an Imidazolium Axle inside a Metal-Organic Framework.

Authors:  Nasim Farahani; Kelong Zhu; Christopher A O'Keefe; Robert W Schurko; Stephen J Loeb
Journal:  Chempluschem       Date:  2016-05-25       Impact factor: 2.863

View more
  2 in total

1.  The N-Terminal Domain of Aβ40-Amyloid Fibril: The MOMD Perspective of its Dynamic Structure from NMR Lineshape Analysis.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-02-05       Impact factor: 2.991

2.  Structural Dynamics by NMR in the Solid State: II. The MOMD Perspective of the Dynamic Structure of Metal-Organic Frameworks Comprising Several Mobile Components.

Authors:  Eva Meirovitch; Zhichun Liang; Robert W Schurko; Stephen J Loeb; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-03-25       Impact factor: 3.466

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.