Literature DB >> 6952191

Characterization of leucine side-chain reorientation in collagen-fibrils by solid-state 2H NMR.

L S Batchelder, C E Sullivan, L W Jelinski, D A Torchia.   

Abstract

We have used 2H quadrupole-echo NMR spectroscopy to study the molecular dynamics of the leucine side chain in collagen fibrils labeled with [2H10]leucine. X-ray crystallographic studies of leucine and small leucyl-containing peptides and proteins [Benedetti, C. (1977) in Proceedings of the Fifth American Peptides Symposium, eds, Goodman, M. & Meienhofer, J. (Wiley, New York), pp. 257--274; Janin, J., Wodak, S., Levitt, M. & Maigret, B. (1978) J. Mol. Biol. 125, 357--386] show that the amino acid side chain exists predominantly in only two of the nine possible conformations. 2H NMR spectra of polycrystalline D,L [2H10]leucine obtained from -45 degrees C to +100 degrees C showed that interconversion of the two conformations did not take place on the 2H NMR timescale in this temperature range. In contrast, experimental lineshapes observed for [2H10]leucine-labeled collagen fibrils from -85 degrees C to +30 degrees C were simulated by using a model in which the side chain hops at various rates between the two predominant conformations found by the x-ray studies. A small difference between calculated and observed linewidths above the freezing point of water can be accounted for by backbone reorientation or by the presence of a small percentage of other side-chain conformations. Thus, these results provide strong evidence that the two predominant x-ray conformations not only exist in the fibrils as the preferred orientations but interconvert at rates that are proportional to temperature over the range - 85 degrees C to +30 degrees C. These observations concur with previous NNR studies of collagen fibrils that demonstrated a mobile contact region between collagen molecules.

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Year:  1982        PMID: 6952191      PMCID: PMC345746          DOI: 10.1073/pnas.79.2.386

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

1.  13C Magnetic resonance evidence for anisotropic molecular motion in collagen fibrils.

Authors:  D A Torchia; D L VanderHart
Journal:  J Mol Biol       Date:  1976-06-14       Impact factor: 5.469

2.  2H NMR study of molecular motion in collagen fibrils.

Authors:  L W Jelinski; C E Sullivan; D A Torchia
Journal:  Nature       Date:  1980-04-10       Impact factor: 49.962

3.  Conformation of amino acid side-chains in proteins.

Authors:  J Janin; S Wodak
Journal:  J Mol Biol       Date:  1978-11-05       Impact factor: 5.469

4.  Investigation of labeled amino acid side-chain motion in collagen using 13C nuclear magnetic resonance.

Authors:  L W Jelinski; D A Torchia
Journal:  J Mol Biol       Date:  1980-04       Impact factor: 5.469

5.  Deuterium nuclear magnetic resonance of specifically labeled native collagen. Investigation of protein molecular dynamics using the quadrupolar echo technique.

Authors:  L W Jelinski; C E Sullivan; L S Batchelder; D A Torchia
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

6.  13C/1H high power double magnetic resonance investigation of collagen backbone motion in fibrils and in solution.

Authors:  L W Jelinski; D A Torchia
Journal:  J Mol Biol       Date:  1979-09-05       Impact factor: 5.469

  6 in total
  38 in total

1.  Rotational orientation of monomers within a designed homo-oligomer transmembrane helical bundle.

Authors:  Kathleen P Howard; Wei Liu; Evan Crocker; Vikas Nanda; James Lear; William F Degrado; Steven O Smith
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

2.  Helix packing and orientation in the transmembrane dimer of gp55-P of the spleen focus forming virus.

Authors:  Wei Liu; Evan Crocker; Stefan N Constantinescu; Steven O Smith
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

3.  Solid-state NMR studies of a diverged microsomal amino-proximate delta12 desaturase peptide reveal causes of stability in bilayer: tyrosine anchoring and arginine snorkeling.

Authors:  William J Gibbons; Ethan S Karp; Nick A Cellar; Robert E Minto; Gary A Lorigan
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

Review 4.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

5.  MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-05-02       Impact factor: 2.991

6.  Interpreting the equatorial diffraction pattern of collagenous tissues in the light of molecular motion.

Authors:  S Lees
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

7.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

8.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

9.  Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example.

Authors:  Mei Hong; Tatiana V Mishanina; Sarah D Cady
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

10.  Enhancement of electron spin echo envelope modulation spectroscopic methods to investigate the secondary structure of membrane proteins.

Authors:  Lishan Liu; Indra D Sahu; Daniel J Mayo; Robert M McCarrick; Kaylee Troxel; Andy Zhou; Erin Shockley; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2012-08-30       Impact factor: 2.991

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