Literature DB >> 19201232

Effects of jump dynamics on solid state nuclear magnetic resonance line shapes and spin relaxation times.

Robert L Vold1, Gina L Hoatson.   

Abstract

This paper describes EXPRESS (EXchange Program for RElaxing Spin Systems), a computer program that simulates the effects of Markovian jump dynamics for a wide variety of solid state nuclear magnetic resonance experiments. A graphical interface is described that facilitates the definition of rotational jumps around non-commuting axes that may occur at arbitrary, different rates. Solid state deuteron NMR is widely used to investigate such processes, and EXPRESS allows simulations of deuteron quadrupole echo and magic angle spinning line (MAS) shapes, as well as partially relaxed line shapes for measurements of anisotropic relaxation of Zeeman and quadrupolar order. Facilities are included for chemical shift tensors (at user-defined orientations relative to the quadrupole coupling tensors), so that EXPRESS is potentially useful for studies of paramagnetic systems where these interactions are of comparable magnitude. Many of the same techniques used for deuterons can be extended to half-integer quadrupolar nuclei. The same interface that specifies rotational "sites" for deuteron NMR studies is usable in EXPRESS to simulate static line shapes, MAS line shapes, and multiple pulse Carr-Purcell-Meiboom-Gill (CPMG) line shapes for the central transition of high spin quadrupoles with second order quadrupole coupling and chemical shift anisotropy. Representative simulations are displayed that show effects of slow libration on deuteron quadrupole echo line shapes and relaxation time anisotropies. EXPRESS is also used to investigate fundamental differences in the mechanism of echo formation in deuteron MAS and quadrupole CPMG experiments, and to illustrate significant differences between these techniques in the context of high spin quadrupolar nuclei. The program is modular and platform-independent, with facilities for users to add routines for experiments not yet envisioned.

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Year:  2009        PMID: 19201232     DOI: 10.1016/j.jmr.2009.01.008

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  35 in total

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Journal:  J Phys Chem B       Date:  2011-12-20       Impact factor: 2.991

2.  Effect of subdomain interactions on methyl group dynamics in the hydrophobic core of villin headpiece protein.

Authors:  Liliya Vugmeyster; Tien Do; Dmitry Ostrovsky; Riqianq Fu
Journal:  Protein Sci       Date:  2013-12-03       Impact factor: 6.725

Review 3.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

4.  MOMD Analysis of NMR Line Shapes from Aβ-Amyloid Fibrils: A New Tool for Characterizing Molecular Environments in Protein Aggregates.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-05-02       Impact factor: 2.991

5.  Comparative Dynamics of Methionine Side-Chain in FMOC-Methionine and in Amyloid Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Chem Phys Lett       Date:  2017-02-14       Impact factor: 2.328

6.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

7.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

8.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

9.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

Review 10.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

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