Literature DB >> 32501783

Parapseudoflavitalea muciniphila gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a human peritoneal tumour and reclassification of Pseudobacter ginsenosidimutans as Pseudoflavitalea ginsenosidimutans comb. nov.

Paul A Lawson1, Nisha B Patel1, Ahmed Mohammed2,3, Edward R B Moore4, Alexander S Lo5, Armando Sardi6, Jeffrey M Davis7, D Annie Doyle1, Yvonne Hui3, Traci Testerman3.   

Abstract

A Gram-stain-negative, microaerophilic, non-motile, rod-shaped bacterium strain designated PMP191FT, was isolated from a human peritoneal tumour. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the organism formed a lineage within the family Chitinophagaceae that was distinct from members of the genus Pseudoflavitalea (95.1-95.2 % sequence similarity) and Pseudobacter ginsenosidimutans (94.4 % sequence similarity). The average nucleotide identity values between strain PMP191FT and Pseudoflavitalea rhizosphaerae T16R-265T and Pseudobacter ginsenosidimutans Gsoil 221T was 68.9 and 62.3% respectively. The only respiratory quinone of strain PMP191FT was MK-7 and the major fatty acids were iso-C15 : 0, iso-C15 : 1 G and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c). The polar lipids consisted of phosphatidylethanolamine and some unidentified amino and glycolipids. The G+C content of strain PMP191FT calculated from the genome sequence was 43.4 mol%. Based on phylogenetic, phenotypic and chemotaxonomic evidence, strain PMP191FT represents a novel species and genus for which the name Parapseudoflavitalea muciniphila gen. nov., sp. nov. is proposed. The type strain is PMP191FT (=DSM 104999T=ATCC BAA-2857T = CCUG 72691T). The phylogenetic analyses also revealed that Pseudobacter ginsenosidimutans shared over 98 % sequence similarly to members of the genus Pseudoflavitalea. However, the average nucleotide identity value between Pseudoflavitalea rhizosphaerae T16R-265T, the type species of the genus and Pseudobacter ginsenosidimutans Gsoil 221T was 86.8 %. Therefore, we also propose that Pseudobacter ginsenosidimutans be reclassified as Pseudoflavitalea ginsenosidimutans comb. nov.

Entities:  

Keywords:  Chitinophagaceae; Parapseudoflavitalea; Pseudoflavitalea; Pseudomyxoma peritonei; cancer

Mesh:

Substances:

Year:  2020        PMID: 32501783      PMCID: PMC7395617          DOI: 10.1099/ijsem.0.004204

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  33 in total

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Authors:  P Kämpfer; N Lodders; E Falsen
Journal:  Int J Syst Evol Microbiol       Date:  2010-04-09       Impact factor: 2.747

4.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

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Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
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Review 6.  The application of ecological theory toward an understanding of the human microbiome.

Authors:  Elizabeth K Costello; Keaton Stagaman; Les Dethlefsen; Brendan J M Bohannan; David A Relman
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7.  Pseudomyxoma peritonei is a disease of MUC2-expressing goblet cells.

Authors:  Jerome T O'Connell; James S Tomlinson; Alice A Roberts; Kathryn F McGonigle; Sanford H Barsky
Journal:  Am J Pathol       Date:  2002-08       Impact factor: 4.307

8.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

9.  Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Soonjae Kwon; Jeongmin Lim; Yeseul Kim; Hyungseok Seo; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2017-05-30       Impact factor: 2.747

10.  Pseudoflavitalea rhizosphaerae gen. nov., sp. nov., isolated from rhizosphere of tomato, and proposal to reclassify Flavitalea soli as Pseudoflavitalea soli comb. nov.

Authors:  Soo-Jin Kim; Hayoung Cho; Jae-Hyung Ahn; Hang-Yeon Weon; Soon-Ja Seok; Jeong-Seon Kim; Soon-Wo Kwon
Journal:  Int J Syst Evol Microbiol       Date:  2016-07-27       Impact factor: 2.747

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  1 in total

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Journal:  Arch Microbiol       Date:  2022-07-18       Impact factor: 2.667

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