Literature DB >> 35849221

Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil.

Shuai Li1,2, Lei Dong1, Jia-Rui Han1, Guo-Yuan Shi1, Chun-Yan Lu1, Lu Xu1, Wen-Hui Lian1, Dalal Hussien M Alkhalifah3, Wael N Hozzein4,5, Wen-Jun Li6,7.   

Abstract

Two strains designated as SYSU D01084T and SYSU D00799T, were isolated from a sandy soil sample collected from Gurbantunggut Desert in Xinjiang, north-west China. Cells of both strains were Gram-stain-negative, strictly aerobic, long-rod-shaped, oxidase- and catalase-negative, motile or non-motile. Colonies were circular, translucent, convex, smooth and light-yellow in color on R2A agar. The two isolates were found to grow at 4-50 ºC, at pH 6.0-8.0 and with 0-1.0% (w/v) NaCl. Analysis of their 16S rRNA gene sequences indicated that they belonged to the family Chitinophagaceae, and closely related to the genera Paraflavitalea, Niastella, Pseudoflavitalea and Flavitalea. The two novel strains shared 98.1% 16S rRNA sequence similarity and represent different species on the basis of low average nucleotide identity (ANI, 83.8%) and digital DNA-DNA hybridization (dDDH, 51.4%) values. The genomic DNA G + C contents of strains SYSU D01084T and SYSU D00799T were 46.0 and 45.6%, respectively. Phylogenetic trees showed that the two isolates were clustered in an individual lineage and not grouped consistently into any specific genus. The polar lipids contained of phosphatidylethanolamine, four unidentified aminolipids, two unidentified aminoglycolipids, and three or four unidentified lipids. The predominant respiratory quinone was MK-7 and the major fatty acids (> 10%) were identified as iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. Based on the combined phenotypic, genomic and phylogenetic analyses, the two strains represent two novel species of a new genus in the family Chitinophagaceae, for which the name Longitalea gen. nov. is proposed, comprising the type species Longitalea arenae sp. nov. (type strain SYSU D01084T = CGMCC 1.18641T = MCCC 1K05006T = KCTC 82283T) and Longitalea luteola sp. nov. (type strain SYSU D00799T = MCCC 1K04987T = KCTC 82282T = NBRC 114888T).
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Chitinophagaceae; Gurbantunggut Desert; Longitalea arenae sp. nov.; Longitalea gen. nov.; Longitalea luteola sp. nov.; Taxonomy

Mesh:

Substances:

Year:  2022        PMID: 35849221     DOI: 10.1007/s00203-022-03119-x

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.667


  33 in total

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Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

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Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil.

Authors:  Jun Heo; Hang-Yeon Weon; Hayoung Cho; Seung-Beom Hong; Jeong-Seon Kim; Soo-Jin Kim; Soon-Wo Kwon
Journal:  J Microbiol       Date:  2019-11-23       Impact factor: 3.422

4.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

5.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

6.  Niastella gongjuensis sp. nov., isolated from greenhouse soil.

Authors:  Soo-Jin Kim; Jae-Hyung Ahn; Hang-Yeon Weon; Seung-Beom Hong; Soon-Ja Seok; Jeong-Seon Kim; Soon-Wo Kwon
Journal:  Int J Syst Evol Microbiol       Date:  2015-06-25       Impact factor: 2.747

7.  Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.

Authors:  Mincheol Kim; Hyun-Seok Oh; Sang-Cheol Park; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2014-02       Impact factor: 2.747

8.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

9.  Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium.

Authors:  C Gonzalez; C Gutierrez; C Ramirez
Journal:  Can J Microbiol       Date:  1978-06       Impact factor: 2.419

10.  Niastella vici sp. nov., isolated from farmland soil.

Authors:  Lu Chen; Dan Wang; Sining Yang; Gejiao Wang
Journal:  Int J Syst Evol Microbiol       Date:  2016-01-31       Impact factor: 2.747

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