Literature DB >> 25769508

Genome sequences as the type material for taxonomic descriptions of prokaryotes.

William B Whitman1.   

Abstract

Genome sequencing of type strains promises to revolutionize prokaryotic systematics by greatly improving the identification of species, elucidating the functional properties of taxonomic groups, and resolving many of the ambiguities in the phylogeny of the higher taxa. Genome sequences could also serve as the type material for naming prokaryotic taxa, which will greatly expand the nomenclature governed by the Bacteriological Code to include many fastidious and uncultured organisms and endosymbionts of great biological interest.
Copyright © 2015 Elsevier GmbH. All rights reserved.

Keywords:  Bacteriological Code; Genomics; Type strain

Mesh:

Substances:

Year:  2015        PMID: 25769508     DOI: 10.1016/j.syapm.2015.02.003

Source DB:  PubMed          Journal:  Syst Appl Microbiol        ISSN: 0723-2020            Impact factor:   4.022


  27 in total

1.  Uncultivated microbes in need of their own taxonomy.

Authors:  Konstantinos T Konstantinidis; Ramon Rosselló-Móra; Rudolf Amann
Journal:  ISME J       Date:  2017-07-21       Impact factor: 10.302

2.  Comparative Genomics of the Genus Lactobacillus Reveals Robust Phylogroups That Provide the Basis for Reclassification.

Authors:  Elisa Salvetti; Hugh M B Harris; Giovanna E Felis; Paul W O'Toole
Journal:  Appl Environ Microbiol       Date:  2018-08-17       Impact factor: 4.792

3.  Reply to the commentary "Uncultivated microbes-in need of their own nomenclature?"

Authors:  Konstantinos T Konstantinidis; Ramon Rosselló-Móra; Rudolf Amann
Journal:  ISME J       Date:  2018-01-15       Impact factor: 10.302

4.  Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Authors:  Ainsley C Nicholson; Christopher A Gulvik; Anne M Whitney; Ben W Humrighouse; James Graziano; Brian Emery; Melissa Bell; Vladimir Loparev; Phalasy Juieng; Jarrett Gartin; Chantal Bizet; Dominique Clermont; Alexis Criscuolo; Sylvain Brisse; John R McQuiston
Journal:  Antonie Van Leeuwenhoek       Date:  2017-08-30       Impact factor: 2.271

Review 5.  Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type.

Authors:  William B Whitman; Maria Chuvochina; Brian P Hedlund; Philip Hugenholtz; Konstantinos T Konstantinidis; Alison E Murray; Marike Palmer; Donovan H Parks; Alexander J Probst; Anna-Louise Reysenbach; Luis M Rodriguez-R; Ramon Rossello-Mora; Iain Sutcliffe; Stephanus N Venter
Journal:  Syst Appl Microbiol       Date:  2022-07-20       Impact factor: 4.064

6.  It is time for a new type of type to facilitate naming the microbial world.

Authors:  M Palmer; I Sutcliffe; S N Venter; B P Hedlund
Journal:  New Microbes New Infect       Date:  2022-06-01

7.  A complete domain-to-species taxonomy for Bacteria and Archaea.

Authors:  Donovan H Parks; Maria Chuvochina; Pierre-Alain Chaumeil; Christian Rinke; Aaron J Mussig; Philip Hugenholtz
Journal:  Nat Biotechnol       Date:  2020-04-27       Impact factor: 54.908

8.  Parapseudoflavitalea muciniphila gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a human peritoneal tumour and reclassification of Pseudobacter ginsenosidimutans as Pseudoflavitalea ginsenosidimutans comb. nov.

Authors:  Paul A Lawson; Nisha B Patel; Ahmed Mohammed; Edward R B Moore; Alexander S Lo; Armando Sardi; Jeffrey M Davis; D Annie Doyle; Yvonne Hui; Traci Testerman
Journal:  Int J Syst Evol Microbiol       Date:  2020-06-05       Impact factor: 2.747

9.  Ecophysiology of the Cosmopolitan OM252 Bacterioplankton (Gammaproteobacteria).

Authors:  Emily R Savoie; V Celeste Lanclos; Michael W Henson; Chuankai Cheng; Eric W Getz; Shelby J Barnes; Douglas E LaRowe; Michael S Rappé; J Cameron Thrash
Journal:  mSystems       Date:  2021-06-29       Impact factor: 6.496

Review 10.  Prokaryotic taxonomy and nomenclature in the age of big sequence data.

Authors:  Philip Hugenholtz; Maria Chuvochina; Aharon Oren; Donovan H Parks; Rochelle M Soo
Journal:  ISME J       Date:  2021-04-06       Impact factor: 10.302

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