| Literature DB >> 32498469 |
Ashraf S Hassan1, Ahmed A Askar2, Ahmed M Naglah3,4, Abdulrahman A Almehizia3,5, Ahmed Ragab6.
Abstract
AEntities:
Keywords: DHFR; DNA gyrase; Schiff bases; antimicrobial; antiproliferative; enzyme inhibitor; molecular docking; pyrazole moiety
Mesh:
Substances:
Year: 2020 PMID: 32498469 PMCID: PMC7321065 DOI: 10.3390/molecules25112593
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structures of bioactive Schiff bases and pyrazole compounds I–IX.
Scheme 1The synthesis of starting materials (1a–d, 3 and 4) and the structure of (2 and 5).
Scheme 2The synthesis of Bis-pyrazole Schiff bases (6a–d and 7a–d).
Scheme 3The synthesis of Schiff bases tethered mono-pyrazole moiety (8a–d and 9a–d).
Inhibition zone (IZ) in mm ± standard deviation of Schiff bases (6a–d, 7a–d, 8a–d, and 9a–d) and reference drugs against pathogenic microbes.
| Schiff Bases and References Drugs |
|
|
| |||||
|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
| |
|
| 21 ± 0.4 | 25 ± 0.31 | 21 ± 0.11 | 24 ± 0.2 | 20 ± 0.15 | 18 ± 0.16 | 22 ± 0.35 | 13 ± 0.3 |
|
| 30 ± 0.5 | 24 ± 0.12 | 29 ± 0.55 | 25 ± 0.81 | 24 ± 0.2 | 20 ± 0.16 | 22 ± 0.56 | 18 ± 0.15 |
|
| 20 ± 0.11 | 23 ± 0.29 | 21 ± 0.54 | 22 ± 0.43 | NA | 15 ± 0.36 | 17 ± 0.21 | 9 ± 0.35 |
|
| 13 ± 0.41 | NA | 14 ± 0.47 | 19 ± 0.33 | 12 ± 0.63 | NA | 13.0 ± 0.2 | NA |
|
| 20 ± 0.4 | 19 ± 0.31 | 21 ± 0.11 | 18 ± 0.2 | 20 ± 0.15 | 18 ± 0.16 | 13 ± 0.35 | 15 ± 0.3 |
|
| 28 ± 0.16 | 23 ± 0.55 | 25 ± 0.3 | 21 ± 0.14 | 24 ± 0.78 | 22 ± 0.12 | 21 ± 0.2 | 17 ± 0.45 |
|
| 32 ± 0.22 | 33 ± 0.53 | 29 ± 0.17 | 30 ± 0.29 | 27 ± 0.73 | 29 ± 0.2 | 27 ± 0.5 | 22 ± 0.11 |
|
| 23 ± 0.22 | 24 ± 0.33 | 22 ± 0.35 | 27 ± 0.3 | 17 ± 0.74 | 17 ± 0.12 | 20 ± 0.5 | 15 ± 0.14 |
|
| 27 ± 0.5 | 26 ± 0.14 | 25 ± 0.33 | 23 ± 0.14 | 25 ± 0.85 | 23 ± 0.11 | 24 ± 0.3 | 20 ± 0.82 |
|
| 15 ± 0.45 | NA | 12 ± 0.74 | 14 ± 0.21 | NA | 15 ± 0.2 | 12 ± 0.65 | NA |
|
| 22 ± 0.41 | 17 ± 0.78 | 25 ± 0.14 | 18 ± 0.3 | NA | 14 ± 0.52 | 19 ± 0.65 | NA |
|
| 24 ± 0.5 | 25 ± 0.77 | 23 ± 0.65 | 26 ± 0.11 | 21±0.2 | 23 ± 0.65 | 25 ± 0.33 | 21 ± 0.16 |
|
| 25 ± 0.21 | 21 ± 0.17 | 19 ± 0.14 | 22 ± 0.18 | 17 ± 0.2 | 20 ± 0.33 | 22 ± 0.19 | 19 ± 0.55 |
|
| 25 ± 0.87 | 21 ± 0.3 | 24 ± 0.35 | 23 ± 0.2 | 21 ± 0.55 | 23 ± 0.4 | 19 ± 0.25 | 17 ± 0.5 |
|
| 22 ± 0.18 | 22 ± 0.34 | 21 ± 0.72 | 23 ± 0.44 | NA | 23 ± 0.33 | 21 ± 0.5 | 19 ± 0.28 |
|
| 18 ± 0.12 | 16 ± 0.54 | NA | 15 ± 0.96 | NA | 12 ± 0.61 | 18 ± 0.2 | 14 ± 0.38 |
|
| 25 ± 0.22 | 25 ± 0.11 | 22 ± 0.25 | 23 ± 0.2 | 20 ± 0.5 | 21 ± 0.55 | NA | NA |
|
| NA | NA | NA | NA | NA | NA | 22 ± 0.2 | 18 ± 0.32 |
NA: no activity (8 mm), weak activity (8–12 mm), moderate activity (12–15 mm), strong activity (>15 mm), solvent (8 mm), and Bacillus subtilis (Bs), Staphylococcus aureus (Sa), Enterococcus faecalis (Ef), Escherichia coli (Ec), Pseudomonas aeruginosa (Pa), Salmonella typhi (St), Candida albicans (Ca), and Fusarium oxysporum (Fo).
Minimal inhibitory concentrations (MIC, µg/mL) and the minimum bactericidal concentrations (MBC, µg/mL) of the potent Schiff bases against bacterial pathogens.
| The Potent Schiff Bases | Gram-Positive | Gram-Negative | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
| |||||||
| MIC | MBC | MIC | MBC | MIC | MBC | MIC | MBC | MIC | MBC | MIC | MBC | |
|
| 7.81 | 14.05 | 15.62 | 31.25 | 9.25 | 18.5 | 62.5 | 87.5 | 31.25 | 53.12 | 15.62 | 28.11 |
|
| 5.57 | 10.58 | 1.95 | 3.7 | 3.9 | 6.63 | 7.81 | 12.49 | 31.25 | 59.37 | 3.9 | 6.63 |
|
| 9.25 | 18.5 | 31.25 | 53.12 | 7.81 | 15.62 | 18.51 | 36.5 | 55.5 | 88.8 | 31.25 | 56.25 |
|
| 1.95 | 3.9 | 5.57 | 5.57 | 3.9 | 6.63 | 0.97 | 1.94 | 5.57 | 10.58 | 7.81 | 12.49 |
|
| 3.9 | 6.63 | 7.81 | 15.62 | 15.62 | 31.25 | 7.81 | 15.62 | 27.77 | 55.54 | 18.51 | 36.5 |
|
| 4.5 | 9.2 | 7.81 | 15.62 | 3.9 | 7.41 | 7.81 | 14.05 | 15.62 | 31.25 | 5.57 | 10.58 |
|
| 31.25 | 40.62 | 62.5 | 87.5 | 62.5 | 93.75 | 15.62 | 18.74 | 62.5 | 87.5 | 31.25 | 43.75 |
Bacillus subtilis (Bs), Staphylococcus aureus (Sa), Enterococcus faecalis (Ef), Escherichia coli (Ec), Pseudomonas aeruginosa (Pa), and Salmonella typhi (St).
Minimal inhibitory concentrations (MIC, µg/mL) and the minimum fungicidal concentrations (MFC, µg/mL) of the potent Schiff bases against fungi pathogen.
| The Potent Schiff Bases |
| |||
|---|---|---|---|---|
|
|
| |||
| MIC | MFC | MIC | MFC | |
|
| 31.25 | 53.12 | 55.5 | 88.8 |
|
| 15.62 | 28.11 | 31.25 | 46.87 |
|
| 31.25 | 41.65 | 55.54 | 87.5 |
|
| 7.81 | 15.62 | 15.62 | 27.77 |
|
| 9.25 | 17.57 | 31.25 | 56.25 |
|
| 7.81 | 12.49 | 15.62 | 26.55 |
|
| 15.62 | 34.62 | 31.25 | 65.62 |
Candida albicans (Ca) and Fusarium oxysporum (Fo).
The IC50 (µM) of Schiff bases (6b, 7b, 7c, 8a, 8d, and 9b) against the two cancer cell lines HepG-2 and MCF-7 as well as Vero cells (ATCC CCL-81) cell lines.
| The Potent Schiff Bases | IC50 (µM) | ||
|---|---|---|---|
| HepG-2 | MCF-7 | Vero | |
|
| 3.42 ± 0.17 | 5.09 ± 0.52 | 343.89 ± 0.49 |
|
| 7.18 ± 0.49 | 4.81 ± 0.25 | 361.22 ± 0.23 |
|
| 1.22 ± 0.23 | 3.24 ± 0.41 | 213.45 ± 0.57 |
|
| 2.25 ± 0.85 | 1.98 ± 1.55 | 120.55 ± 0.34 |
|
| 2.63 ± 0.44 | 3.69 ± 0.22 | 241.19 ± 1.55 |
|
| 1.92 ± 0.49 | 2.21 ± 0.36 | 195.94 ± 0.57 |
|
| 3.92 ± 0.50 | 1.94 ± 0.80 | ND |
** ND meaning not determined.
Figure 2The antiproliferative activities (IC50, µM) of the Schiff bases and doxorubicin against HepG-2 and MCF-7 cell lines.
Intracellular killing activities of Schiff bases.
| The Potent Schiff Bases (at 15.62 µg/mL) | Intracellular Killing Activity % |
|---|---|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
In vitro antimicrobial activities of the most promising Schiff bases against multidrug-resistant bacteria (MDRB).
| The Potent Schiff Bases | Mean Diameter of Inhibition Zone (mm) against MDRB. | |||
|---|---|---|---|---|
|
| 21 ± 0.21 | 20 ±0. 35 | 25 ± 0.15 | 21 ± 0.66 |
|
| 18 ± 0.11 | 15 ± 0.41 | 20 ± 0.44 | 21 ± 0.33 |
|
| 17 ± 0.37 | 21 ± 0.19 | 21 ± 0.3 | 22 ± 0.5 |
|
| 26 ± 0.15 | 24 ± 0.12 | 25 ± 0.46 | 27 ± 0.54 |
|
| 18 ± 0.5 | 21 ± 0.23 | 16 ± 0.11 | 25 ± 0.99 |
|
| 24 ± 0.65 | 25 ± 0.12 | 22 ± 0.2 | 24 ± 0.88 |
|
| 25 ± 0.50 | 26 ± 0.5 | 27 ± 0.98 | 24 ± 0.47 |
Minimal inhibitory concentrations (MIC, µg/mL) and minimum bactericidal concentrations (MBC, µg/mL) of the most potent Schiff bases against MDRB.
| The Potent Schiff Bases | ||||||||
|---|---|---|---|---|---|---|---|---|
| MIC | MBC | MIC | MBC | MIC | MBC | MIC | MBC | |
|
| 6.25 | 11.87 | 7.81 | 15.62 | 3.9 | 7.41 | 7.81 | 15.98 |
|
| 7.81 | 15.62 | 8.88 | 15.98 | 9.25 | 18.5 | 7.81 | 15.62 |
|
| 7.81 | 14.83 | 5.55 | 11.1 | 7.81 | 14.83 | 4.44 | 6.66 |
|
| 1.95 | 3.9 | 3.9 | 7.8 | 1.95 | 3.9 | 3.9 | 7.8 |
|
| 15.62 | 31.25 | 3.9 | 7.41 | 15.62 | 31.25 | 6.25 | 11.87 |
|
| 2.5 | 4.5 | 1.95 | 3.31 | 6.25 | 11.87 | 5.2 | 9.88 |
|
| 1.25 | 2.81 | 0.78 | 1.56 | 1.57 | 3.53 | 3.13 | 4.69 |
Determination of the DNA gyrase and DHFR inhibitory activities of the most promising two Schiff bases 8a and 9b.
| Schiff Bases | IC50 (Mean ± SEM, µM) | ||
|---|---|---|---|
| DHFR | |||
|
| 7.69 ± 0.23 | 15.27 ± 0.50 | 3.98 ± 0.61 |
|
| 10.47 ± 0.55 | 14.25 ± 0.42 | 6.48 ± 0.33 |
|
| 26.31 ± 1.64 | 29.72 ± 1.32 | --- |
|
| --- | --- | 5.17 ± 0.12 |
Figure 3The inhibitory activities (IC50, µM) of the two Schiff bases (8a and 9b) and reference drugs against DNA gyrase and dihydrofolate reductase (DHFR).
Docking results of the promising pyrazole Schiff bases inside 1DLS and 2XCT active site.
| The Promising Compounds | Energy Score | Amino Acids | Interacting Groups | Length (Å) |
|---|---|---|---|---|
|
| −27.31 | Ile 7 | NH2 of pyrimidine ring | 2.89 |
|
| −18.96 | Asp 21 | NH of pyrazole | 3.10 |
|
| −26.13 | Arg 28 | Two oxygen of two methoxy group in tri methoxy phenyl | 2.84 |
|
| −11.87 | Ser 1084 | CO of COOH | 2.49 |
|
| −19.09 | Asp 508 | NH of pyrazole | 2.51 |
|
| −21.74 | Lys 1043 | Oxygen of methoxy group | 3.00 |
|
| ||||
Figure 4(a) 2D and 3D interactions of compound 8a in the active site of 1DLS. (b) 2D and 3D interactions of compound 9b in the active site of 1DLS. (c) 2D and 3D interactions of compound 8a in the active site of 2XCT. (d) 2D and 3D interactions of compound 9b in the active site of 2XCT.
In silico the physicochemical properties of the two pyrazole Schiff bases (8a and 9b) and the reference drugs for Lipinski’s rule of five and Veber filter:-.
| Schiff Bases and the Reference | MW | nHBD | TPSA | Violations fromLipinski’s Rule | Violations from Veber Filter | |||
|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
|
|
| 418.49 | 2.86 | 4 | 3 | 7 | 108.63 | Yes; 0 violation | Yes; 0 violation |
|
| 501.53 | 2.73 | 7 | 3 | 11 | 119.09 | Yes; 1 violation: | No; 1 violation: |
|
| 319.33 | 1.04 | 5 | 2 | 3 | 74.57 | Yes; 0 violation | Yes; 0 violation |
|
| 331.34 | 1.28 | 5 | 2 | 3 | 74.57 | Yes; 0 violation | Yes; 0 violation |
|
| 290.32 | 0.41 | 5 | 2 | 5 | 105.51 | Yes; 0 violation | Yes; 0 violation |
In silico the pharmacokinetics properties of the two pyrazole Schiff bases (8a and 9b) and the reference drugs:-.
| Schiff Basesand | GI | BBB | P-gp | CYP1A2 | CYP2C19 | CYP2C9 | CYP2D6 | CYP3A4 | Log Kp |
|---|---|---|---|---|---|---|---|---|---|
|
| High | No | No | No | Yes | Yes | No | Yes | −5.95 |
|
| Low | No | No | No | Yes | Yes | Yes | Yes | −5.81 |
|
| High | No | Yes | No | No | No | No | No | −8.98 |
|
| High | No | Yes | No | No | No | No | No | −9.09 |
|
| High | No | Yes | No | No | No | No | No | −7.42 |