Literature DB >> 32494078

Selective prebiotic formation of RNA pyrimidine and DNA purine nucleosides.

Jianfeng Xu1, Václav Chmela1, Nicholas J Green1, David A Russell1, Mikołaj J Janicki2, Robert W Góra2, Rafał Szabla3,4, Andrew D Bond5, John D Sutherland6.   

Abstract

The nature of the first genetic polymer is the subject of major debate1. Although the 'RNA world' theory suggests that Rn class="Chemical">NA was the first replicable information carrier of the prebiotic era-that is, prior to the dawn of life2,3-other evidence implies that life may have started with a heterogeneous nucleic acid genetic system that included both RNA and DNA4. Such a theory streamlines the eventual 'genetic takeover' of homogeneous DNA from RNA as the principal information-storage molecule, but requires a selective abiotic synthesis of both RNA and DNA building blocks in the same local primordial geochemical scenario. Here we demonstrate a high-yielding, completely stereo-, regio- and furanosyl-selective prebiotic synthesis of the purine deoxyribonucleosides: deoxyadenosine and deoxyinosine. Our synthesis uses key intermediates in the prebiotic synthesis of the canonical pyrimidine ribonucleosides (cytidine and uridine), and we show that, once generated, the pyrimidines persist throughout the synthesis of the purine deoxyribonucleosides, leading to a mixture of deoxyadenosine, deoxyinosine, cytidine and uridine. These results support the notion that purine deoxyribonucleosides and pyrimidine ribonucleosides may have coexisted before the emergence of life5.

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Year:  2020        PMID: 32494078      PMCID: PMC7116818          DOI: 10.1038/s41586-020-2330-9

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  33 in total

Review 1.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  A prebiotically plausible synthesis of pyrimidine β-ribonucleosides and their phosphate derivatives involving photoanomerization.

Authors:  Jianfeng Xu; Maria Tsanakopoulou; Christopher J Magnani; Rafał Szabla; Judit E Šponer; Jiří Šponer; Robert W Góra; John D Sutherland
Journal:  Nat Chem       Date:  2016-11-21       Impact factor: 24.427

3.  Studies in prebiotic synthesis: VII. Solid-state synthesis of purine nucleosides.

Authors:  W D Fuller; R A Sanchez; L E Orgel
Journal:  J Mol Evol       Date:  1972       Impact factor: 2.395

4.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

5.  Prebiotic phosphorylation of 2-thiouridine provides either nucleotides or DNA building blocks via photoreduction.

Authors:  Jianfeng Xu; Nicholas J Green; Clémentine Gibard; Ramanarayanan Krishnamurthy; John D Sutherland
Journal:  Nat Chem       Date:  2019-04-01       Impact factor: 24.427

6.  Replacing uridine with 2-thiouridine enhances the rate and fidelity of nonenzymatic RNA primer extension.

Authors:  Benjamin D Heuberger; Ayan Pal; Francesca Del Frate; Ved V Topkar; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2015-02-16       Impact factor: 15.419

7.  A reverse transcriptase ribozyme.

Authors:  Biswajit Samanta; Gerald F Joyce
Journal:  Elife       Date:  2017-09-26       Impact factor: 8.140

8.  Enhanced Nonenzymatic RNA Copying with 2-Aminoimidazole Activated Nucleotides.

Authors:  Li Li; Noam Prywes; Chun Pong Tam; Derek K O'Flaherty; Victor S Lelyveld; Enver Cagri Izgu; Ayan Pal; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2017-01-24       Impact factor: 15.419

9.  A Highly Reactive Imidazolium-Bridged Dinucleotide Intermediate in Nonenzymatic RNA Primer Extension.

Authors:  Travis Walton; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

10.  The role of sugar-backbone heterogeneity and chimeras in the simultaneous emergence of RNA and DNA.

Authors:  Subhendu Bhowmik; Ramanarayanan Krishnamurthy
Journal:  Nat Chem       Date:  2019-09-16       Impact factor: 24.427

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  26 in total

1.  How the first life on Earth survived its biggest threat - water.

Authors:  Michael Marshall
Journal:  Nature       Date:  2020-12       Impact factor: 49.962

2.  An RNA-cleaving threose nucleic acid enzyme capable of single point mutation discrimination.

Authors:  Yueyao Wang; Yao Wang; Dongfan Song; Xin Sun; Zhe Li; Jia-Yu Chen; Hanyang Yu
Journal:  Nat Chem       Date:  2021-12-16       Impact factor: 24.427

3.  Photochemistry of 2-thiooxazole: a plausible prebiotic precursor to RNA nucleotides.

Authors:  Lauren Bertram; Samuel J Roberts; Matthew W Powner; Rafał Szabla
Journal:  Phys Chem Chem Phys       Date:  2022-09-14       Impact factor: 3.945

4.  2,6-diaminopurine promotes repair of DNA lesions under prebiotic conditions.

Authors:  Rafał Szabla; Magdalena Zdrowowicz; Paulina Spisz; Nicholas J Green; Petr Stadlbauer; Holger Kruse; Jiří Šponer; Janusz Rak
Journal:  Nat Commun       Date:  2021-05-21       Impact factor: 17.694

Review 5.  Origins and evolving functionalities of tRNA-derived small RNAs.

Authors:  Qi Chen; Xudong Zhang; Junchao Shi; Menghong Yan; Tong Zhou
Journal:  Trends Biochem Sci       Date:  2021-05-27       Impact factor: 14.264

6.  Dynamic Exchange of Substituents in a Prebiotic Organocatalyst: Initial Steps towards an Evolutionary System.

Authors:  Anna C Closs; Maximilian Bechtel; Oliver Trapp
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-27       Impact factor: 16.823

Review 7.  The "Water Problem"(sic), the Illusory Pond and Life's Submarine Emergence-A Review.

Authors:  Michael J Russell
Journal:  Life (Basel)       Date:  2021-05-10

8.  A robotic prebiotic chemist probes long term reactions of complexifying mixtures.

Authors:  Silke Asche; Geoffrey J T Cooper; Graham Keenan; Cole Mathis; Leroy Cronin
Journal:  Nat Commun       Date:  2021-06-10       Impact factor: 14.919

Review 9.  Illuminating Life's Origins: UV Photochemistry in Abiotic Synthesis of Biomolecules.

Authors:  Nicholas J Green; Jianfeng Xu; John D Sutherland
Journal:  J Am Chem Soc       Date:  2021-04-21       Impact factor: 15.419

10.  A natural riboswitch scaffold with self-methylation activity.

Authors:  Laurin Flemmich; Sarah Heel; Sarah Moreno; Kathrin Breuker; Ronald Micura
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

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