Literature DB >> 34053843

Origins and evolving functionalities of tRNA-derived small RNAs.

Qi Chen1, Xudong Zhang2, Junchao Shi2, Menghong Yan3, Tong Zhou4.   

Abstract

Transfer RNA (tRNA)-derived small RNAs (tsRNAs) are among the most ancient small RNAs in all domains of life and are generated by the cleavage of tRNAs. Emerging studies have begun to reveal the versatile roles of tsRNAs in fundamental biological processes, including gene silencing, ribosome biogenesis, retrotransposition, and epigenetic inheritance, which are rooted in tsRNA sequence conservation, RNA modifications, and protein-binding abilities. We summarize the mechanisms of tsRNA biogenesis and the impact of RNA modifications, and propose how thinking of tsRNA functionality from an evolutionary perspective urges the expansion of tsRNA research into a wider spectrum, including cross-tissue/cross-species regulation and harnessing of the 'tsRNA code' for precision medicine.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Argonaute proteins; mimicry; ribonucleoprotein (RNP); ribozyme; tRNA fragmentation; translation

Mesh:

Substances:

Year:  2021        PMID: 34053843      PMCID: PMC8448906          DOI: 10.1016/j.tibs.2021.05.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   14.264


  138 in total

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4.  Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung Adenocarcinoma.

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Journal:  Cell Res       Date:  2018-02-20       Impact factor: 25.617

6.  Peripheral blood non-canonical small non-coding RNAs as novel biomarkers in lung cancer.

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Journal:  Nucleic Acids Res       Date:  2009-09-03       Impact factor: 16.971

8.  A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm.

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10.  5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA.

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  13 in total

1.  The origin of RNA interference: Adaptive or neutral evolution?

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Review 2.  The Emerging Role of Non-Coding RNAs in Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells.

Authors:  Xiaoying Chen; Wei Xie; Ming Zhang; Yuhan Shi; Shaofen Xu; Haoyu Cheng; Lihong Wu; Janak L Pathak; Zhichao Zheng
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3.  Small Noncoding RNAs Contribute to Sperm Oxidative Stress-Induced Programming of Behavioral and Metabolic Phenotypes in Offspring.

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Review 4.  Transfer RNA-Derived Small RNAs: Novel Regulators and Biomarkers of Cancers.

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Journal:  Front Oncol       Date:  2022-04-28       Impact factor: 5.738

5.  Angiogenin mediates paternal inflammation-induced metabolic disorders in offspring through sperm tsRNAs.

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6.  A Novel Serum tsRNA for Diagnosis and Prediction of Nephritis in SLE.

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Journal:  Front Immunol       Date:  2021-11-11       Impact factor: 7.561

7.  tsRNA-5001a promotes proliferation of lung adenocarcinoma cells and is associated with postoperative recurrence in lung adenocarcinoma patients.

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8.  Characteristics of Transfer RNA-Derived Fragments Expressed during Human Renal Cell Development: The Role of Dicer in tRF Biogenesis.

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9.  Antitumor Activities of tRNA-Derived Fragments and tRNA Halves from Non-pathogenic Escherichia coli Strains on Colorectal Cancer and Their Structure-Activity Relationship.

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Review 10.  Small Noncoding RNAs in Reproduction and Infertility.

Authors:  Qifan Zhu; Jane Allyn Kirby; Chen Chu; Lan-Tao Gou
Journal:  Biomedicines       Date:  2021-12-12
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