Literature DB >> 32472931

A decade of research on the second messenger c-di-AMP.

Wen Yin1, Xia Cai1, Hongdan Ma1, Li Zhu1, Yuling Zhang1, Shan-Ho Chou1, Michael Y Galperin2, Jin He1.   

Abstract

Cyclic dimeric adenosine 3',5'-monophosphate (c-di-AMP) is an emerging second messenger in bacteria and archaea that is synthesized from two molecules of ATP by diadenylate cyclases and degraded to pApA or two AMP molecules by c-di-AMP-specific phosphodiesterases. Through binding to specific protein- and riboswitch-type receptors, c-di-AMP regulates a wide variety of prokaryotic physiological functions, including maintaining the osmotic pressure, balancing central metabolism, monitoring DNA damage and controlling biofilm formation and sporulation. It mediates bacterial adaptation to a variety of environmental parameters and can also induce an immune response in host animal cells. In this review, we discuss the phylogenetic distribution of c-di-AMP-related enzymes and receptors and provide some insights into the various aspects of c-di-AMP signaling pathways based on more than a decade of research. We emphasize the key role of c-di-AMP in maintaining bacterial osmotic balance, especially in Gram-positive bacteria. In addition, we discuss the future direction and trends of c-di-AMP regulatory network, such as the likely existence of potential c-di-AMP transporter(s), the possibility of crosstalk between c-di-AMP signaling with other regulatory systems, and the effects of c-di-AMP compartmentalization. This review aims to cover the broad spectrum of research on the regulatory functions of c-di-AMP and c-di-AMP signaling pathways. © FEMS 2020.

Entities:  

Keywords:  c-di-AMP; metabolic enzyme; osmotic balance; physiological functions; protein receptor; riboswitch

Mesh:

Substances:

Year:  2020        PMID: 32472931      PMCID: PMC7850090          DOI: 10.1093/femsre/fuaa019

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  138 in total

1.  A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases.

Authors:  M Y Galperin; A Bairoch; E V Koonin
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

2.  A Novel Phosphodiesterase of the GdpP Family Modulates Cyclic di-AMP Levels in Response to Cell Membrane Stress in Daptomycin-Resistant Enterococci.

Authors:  Xu Wang; Milya Davlieva; Jinnethe Reyes; Diana Panesso; Cesar A Arias; Yousif Shamoo
Journal:  Antimicrob Agents Chemother       Date:  2017-02-23       Impact factor: 5.191

3.  Listeria monocytogenes multidrug resistance transporters and cyclic di-AMP, which contribute to type I interferon induction, play a role in cell wall stress.

Authors:  Millie Kaplan Zeevi; Nirit S Shafir; Shira Shaham; Sivan Friedman; Nadejda Sigal; Ran Nir Paz; Ivo G Boneca; Anat A Herskovits
Journal:  J Bacteriol       Date:  2013-09-20       Impact factor: 3.490

4.  Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA.

Authors:  Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  EMBO J       Date:  2014-09-30       Impact factor: 11.598

5.  Coping with an Essential Poison: a Genetic Suppressor Analysis Corroborates a Key Function of c-di-AMP in Controlling Potassium Ion Homeostasis in Gram-Positive Bacteria.

Authors:  Fabian M Commichau; Jörg Stülke
Journal:  J Bacteriol       Date:  2018-05-24       Impact factor: 3.490

6.  Cyclic di-AMP targets the cystathionine beta-synthase domain of the osmolyte transporter OpuC.

Authors:  TuAnh Ngoc Huynh; Philip H Choi; Kamakshi Sureka; Hannah E Ledvina; Julian Campillo; Liang Tong; Joshua J Woodward
Journal:  Mol Microbiol       Date:  2016-07-26       Impact factor: 3.501

7.  Binding of Cyclic Di-AMP to the Staphylococcus aureus Sensor Kinase KdpD Occurs via the Universal Stress Protein Domain and Downregulates the Expression of the Kdp Potassium Transporter.

Authors:  Joana A Moscoso; Hannah Schramke; Yong Zhang; Tommaso Tosi; Amina Dehbi; Kirsten Jung; Angelika Gründling
Journal:  J Bacteriol       Date:  2015-07-20       Impact factor: 3.490

8.  Identification of the Components Involved in Cyclic Di-AMP Signaling in Mycoplasma pneumoniae.

Authors:  Cedric Blötz; Katrin Treffon; Volkhard Kaever; Frank Schwede; Elke Hammer; Jörg Stülke
Journal:  Front Microbiol       Date:  2017-07-13       Impact factor: 5.640

9.  A c-di-AMP riboswitch controlling kdpFABC operon transcription regulates the potassium transporter system in Bacillus thuringiensis.

Authors:  Xun Wang; Xia Cai; Hongdan Ma; Wen Yin; Li Zhu; Xinfeng Li; Heon M Lim; Shan-Ho Chou; Jin He
Journal:  Commun Biol       Date:  2019-04-29

10.  The Pfam protein families database in 2019.

Authors:  Sara El-Gebali; Jaina Mistry; Alex Bateman; Sean R Eddy; Aurélien Luciani; Simon C Potter; Matloob Qureshi; Lorna J Richardson; Gustavo A Salazar; Alfredo Smart; Erik L L Sonnhammer; Layla Hirsh; Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  19 in total

1.  c-di-AMP Accumulation Regulates Growth, Metabolism, and Immunogenicity of Mycobacterium smegmatis.

Authors:  Huanhuan Ning; Xuan Liang; Yanling Xie; Lu Bai; Wei Zhang; Lifei Wang; Jian Kang; Yanzhi Lu; Yanling Ma; Guangchun Bai; Yinlan Bai
Journal:  Front Microbiol       Date:  2022-05-24       Impact factor: 6.064

2.  Atypical cyclic di-AMP signaling is essential for Porphyromonas gingivalis growth and regulation of cell envelope homeostasis and virulence.

Authors:  M Fata Moradali; Shirin Ghods; Heike Bähre; Richard J Lamont; David A Scott; Roland Seifert
Journal:  NPJ Biofilms Microbiomes       Date:  2022-07-06       Impact factor: 8.462

3.  Cyclic-di-AMP Phosphodiesterase Elicits Protective Immune Responses Against Mycobacterium tuberculosis H37Ra Infection in Mice.

Authors:  Yanzhi Lu; Huanhuan Ning; Jian Kang; Guangchun Bai; Lei Zhou; Yali Kang; Zhengfeng Wu; Maolin Tian; Junhao Zhao; Yueyun Ma; Yinlan Bai
Journal:  Front Cell Infect Microbiol       Date:  2022-06-22       Impact factor: 6.073

4.  Thymidine starvation promotes c-di-AMP-dependent inflammation during pathogenic bacterial infection.

Authors:  Qing Tang; Mimi R Precit; Maureen K Thomason; Sophie F Blanc; Fariha Ahmed-Qadri; Adelle P McFarland; Daniel J Wolter; Lucas R Hoffman; Joshua J Woodward
Journal:  Cell Host Microbe       Date:  2022-04-18       Impact factor: 31.316

5.  Assessment of Diadenylate Cyclase and c-di-AMP-phosphodiesterase Activities Using Thin-layer and Ion Exchange Chromatography.

Authors:  Andreas Latoscha; David Jan Drexler; Gregor Witte; Natalia Tschowri
Journal:  Bio Protoc       Date:  2021-01-05

Review 6.  Ways to control harmful biofilms: prevention, inhibition, and eradication.

Authors:  Wen Yin; Siyang Xu; Yiting Wang; Yuling Zhang; Shan-Ho Chou; Michael Y Galperin; Jin He
Journal:  Crit Rev Microbiol       Date:  2020-12-28       Impact factor: 7.624

7.  c-di-AMP Is Essential for the Virulence of Enterococcus faecalis.

Authors:  Shivani Kundra; Ling Ning Lam; Jessica K Kajfasz; Leila G Casella; Marissa J Andersen; Jacqueline Abranches; Ana L Flores-Mireles; José A Lemos
Journal:  Infect Immun       Date:  2021-08-23       Impact factor: 3.441

8.  A Rationally Designed c-di-AMP Förster Resonance Energy Transfer Biosensor To Monitor Nucleotide Dynamics.

Authors:  Alex J Pollock; Philip H Choi; Shivam A Zaver; Liang Tong; Joshua J Woodward
Journal:  J Bacteriol       Date:  2021-09-08       Impact factor: 3.490

9.  The Borrelia burgdorferi Adenylate Cyclase, CyaB, Is Important for Virulence Factor Production and Mammalian Infection.

Authors:  Vanessa M Ante; Lauren C Farris; Elizabeth P Saputra; Allie J Hall; Nathaniel S O'Bier; Adela S Oliva Chávez; Richard T Marconi; Meghan C Lybecker; Jenny A Hyde
Journal:  Front Microbiol       Date:  2021-05-25       Impact factor: 5.640

10.  In Vitro Selection of High-Level Beta-Lactam Resistance in Methicillin-Susceptible Staphylococcus aureus.

Authors:  Vladimir Gostev; Olga Kalinogorskaya; Ksenia Ivanova; Ekaterina Kalisnikova; Irina Lazareva; Polina Starkova; Sergey Sidorenko
Journal:  Antibiotics (Basel)       Date:  2021-05-26
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