Literature DB >> 32428982

Taxon-rich phylogeny and taxonomy of the genus Phacus (Euglenida) based on morphological and molecular data.

Maja Łukomska-Kowalczyk1, Alicja Fells1, Katarzyna Chaber1, Rafał Milanowski1, Bożena Zakryś1.   

Abstract

Morphological and molecular features were analyzed for a species of Phacus to better understand the phylogenetic relationships among them and establish the taxonomy. Phylogenetic analyses were based on nSSU rDNA and the research resulted in 55 new sequences. The study included species available in algal collections and those isolated directly from the environment in Poland and the Czech Republic. As a result, the obtained phylogenetic tree of Phacus includes 50 species, out of which 7 are represented on a tree for the first time (Phacus anacoelus, P. anomalus, P. curvicauda, P. elegans, P. lismorensis, P. minutus and P. stokesii) and many have been taxonomically verified. For all verified species, diagnostic descriptions were amended, the naming was reordered and epitypes were designated.
© 2020 The Authors. Journal of Phycology published by Wiley Periodicals LLC on behalf of Phycological Society of America.

Entities:  

Keywords:  zzm321990Phacuszzm321990; Euglenida; environmental sampling; nSSU rDNA; phylogeny; taxonomical revision

Mesh:

Substances:

Year:  2020        PMID: 32428982      PMCID: PMC7687149          DOI: 10.1111/jpy.13028

Source DB:  PubMed          Journal:  J Phycol        ISSN: 0022-3646            Impact factor:   2.923


  16 in total

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5.  Molecular and Morphological Delimitation of Species in the Group of Lepocinclis Ovum-like taxa (Euglenida).

Authors:  Maja Łukomska-Kowalczyk; Katarzyna Chaber; Alicja Fells; Rafał Milanowski; Bożena Zakryś
Journal:  J Phycol       Date:  2019-12-30       Impact factor: 2.923

6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  A NEW METHOD FOR OBTAINING NUCLEAR GENE SEQUENCES FROM FIELD SAMPLES AND TAXONOMIC REVISIONS OF THE PHOTOSYNTHETIC EUGLENOIDS LEPOCINCLIS (EUGLENA) HELICOIDEUS AND LEPOCINCLIS (PHACUS) HORRIDUS (EUGLENOPHYTA)(1).

Authors:  Matthew S Bennett; Richard E Triemer
Journal:  J Phycol       Date:  2012-01-10       Impact factor: 2.923

8.  A redescription of morphologically similar species from the genus Euglena: E. laciniata, E. sanguinea, E. sociabilis, and E. splendens(1).

Authors:  Anna Karnkowska-Ishikawa; Rafał Milanowski; Richard E Triemer; Bożena Zakryś
Journal:  J Phycol       Date:  2013-05-06       Impact factor: 2.923

9.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

10.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

Authors:  Salvador Capella-Gutiérrez; José M Silla-Martínez; Toni Gabaldón
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

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