Literature DB >> 27009671

A NEW METHOD FOR OBTAINING NUCLEAR GENE SEQUENCES FROM FIELD SAMPLES AND TAXONOMIC REVISIONS OF THE PHOTOSYNTHETIC EUGLENOIDS LEPOCINCLIS (EUGLENA) HELICOIDEUS AND LEPOCINCLIS (PHACUS) HORRIDUS (EUGLENOPHYTA)(1).

Matthew S Bennett1, Richard E Triemer1.   

Abstract

One of the foremost issues in the field of algal taxonomy is the inability to acquire, grow, and sequence new taxa. This problem is particularly true in the study of photosynthetic euglenoids where most of the distinct taxa in culture collections have been sequenced, and many other taxa of interest have been resistant to culturing, and thus, sequencing. In an effort to address this problem, we have utilized a new technique, novel to the field of taxonomy, which allows for the sequencing of nuclear genes from a very small number of cells. Through this procedure, a DNA extraction followed by a multiple displacement amplification (MDA), taxa obtained by field collection had their genomic DNA (gDNA) amplified many fold to microgram quantities. The DNA was then used as template DNA for PCR reactions, and multiple nuclear genes were amplified successfully from several different taxa. By applying this procedure, we were able to shed new light on taxa that have been historically difficult to classify, resulting in the assignment of Euglena helicoideus (C. Bernard) M. S. Benn. et Triemer and Phacus horridus (Pochm.) M. S. Benn. et Triemer to the genus Lepocinclis.
© 2012 Phycological Society of America.

Entities:  

Keywords:  Euglena helicoideus; Euglenophyta; Lepocinclis helicoideus; Lepocinclis horridus; Phacus gigas; Phacus helikoides; Phacus horridus; Phacus longicauda; multiple displacement amplification

Year:  2012        PMID: 27009671     DOI: 10.1111/j.1529-8817.2011.01101.x

Source DB:  PubMed          Journal:  J Phycol        ISSN: 0022-3646            Impact factor:   2.923


  3 in total

1.  Taxon-rich phylogeny and taxonomy of the genus Phacus (Euglenida) based on morphological and molecular data.

Authors:  Maja Łukomska-Kowalczyk; Alicja Fells; Katarzyna Chaber; Rafał Milanowski; Bożena Zakryś
Journal:  J Phycol       Date:  2020-06-26       Impact factor: 2.923

2.  Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology.

Authors:  Katarzyna Chaber; Maja Łukomska-Kowalczyk; Alicja Fells; Rafał Milanowski; Bożena Zakryś
Journal:  J Phycol       Date:  2021-12-06       Impact factor: 3.173

3.  Dynamic evolution of inverted repeats in Euglenophyta plastid genomes.

Authors:  Anna Karnkowska; Matthew S Bennett; Richard E Triemer
Journal:  Sci Rep       Date:  2018-10-30       Impact factor: 4.379

  3 in total

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