Literature DB >> 32401689

Cellular Response to Proton Irradiation: A Simulation Study with TOPAS-nBio.

Hongyu Zhu1,2,3, Aimee L McNamara1,4, Stephen J McMahon5, Jose Ramos-Mendez6, Nicholas T Henthorn7, Bruce Faddegon6, Kathryn D Held1,4, Joseph Perl8, Junli Li2,3, Harald Paganetti1,4, Jan Schuemann1,4.   

Abstract

The cellular response to ionizing radiation continues to be of significant research interest in cancer radiotherapy, and DNA is recognized as the critical target for most of the biologic effects of radiation. Incident particles can cause initial DNA damages through physical and chemical interactions within a short time scale. Initial DNA damages can undergo repair via different pathways available at different stages of the cell cycle. The misrepair of DNA damage results in genomic rearrangement and causes mutations and chromosome aberrations, which are drivers of cell death. This work presents an integrated study of simulating cell response after proton irradiation with energies of 0.5-500 MeV (LET of 60-0.2 keV/µm). A model of a whole nucleus with fractal DNA geometry was implemented in TOPAS-nBio for initial DNA damage simulations. The default physics and chemistry models in TOPAS-nBio were used to describe interactions of primary particles, secondary particles, and radiolysis products within the nucleus. The initial DNA double-strand break (DSB) yield was found to increase from 6.5 DSB/Gy/Gbp at low-linear energy transfer (LET) of 0.2 keV/µm to 21.2 DSB/Gy/Gbp at high LET of 60 keV/µm. A mechanistic repair model was applied to predict the characteristics of DNA damage repair and dose response of chromosome aberrations. It was found that more than 95% of the DSBs are repaired within the first 24 h and the misrepaired DSB fraction increases rapidly with LET and reaches 15.8% at 60 keV/µm with an estimated chromosome aberration detection threshold of 3 Mbp. The dicentric and acentric fragment yields and the dose response of micronuclei formation after proton irradiation were calculated and compared with experimental results. ©2020 by Radiation Research Society. All rights of reproduction in any form reserved.

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Year:  2020        PMID: 32401689      PMCID: PMC7484135          DOI: 10.1667/RR15531.1

Source DB:  PubMed          Journal:  Radiat Res        ISSN: 0033-7587            Impact factor:   2.841


  64 in total

1.  DNA fragmentation in mammalian cells exposed to various light ions.

Authors:  M Belli; R Cherubini; M Dalla Vecchia; V Dini; G Esposito; G Moschini; O Sapora; C Signoretti; G Simone; E Sorrentino; M A Tabocchini
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2.  Effects of very low fluences of high-energy protons or iron ions on irradiated and bystander cells.

Authors:  H Yang; N Magpayo; A Rusek; I-H Chiang; M Sivertz; K D Held
Journal:  Radiat Res       Date:  2011-10-12       Impact factor: 2.841

3.  Effects of radiation quality and oxygen on clustered DNA lesions and cell death.

Authors:  Robert D Stewart; Victor K Yu; Alexandros G Georgakilas; Constantinos Koumenis; Joo Han Park; David J Carlson
Journal:  Radiat Res       Date:  2011-08-08       Impact factor: 2.841

4.  Evaluation of early radiation DNA damage in a fractal cell nucleus model using Geant4-DNA.

Authors:  Dousatsu Sakata; Nathanael Lampe; Mathieu Karamitros; Ioanna Kyriakou; Oleg Belov; Mario A Bernal; David Bolst; Marie-Claude Bordage; Vincent Breton; Jeremy M C Brown; Ziad Francis; Vladimir Ivanchenko; Sylvain Meylan; Koichi Murakami; Shogo Okada; Ivan Petrovic; Aleksandra Ristic-Fira; Giovanni Santin; David Sarramia; Takashi Sasaki; Wook-Geun Shin; Nicolas Tang; Hoang N Tran; Carmen Villagrasa; Dimitris Emfietzoglou; Petteri Nieminen; Susanna Guatelli; Sebastien Incerti
Journal:  Phys Med       Date:  2019-05-17       Impact factor: 2.685

5.  A quantitative comparison of potentially lethal damage repair and the rejoining of interphase chromosome breaks in low passage normal human fibroblasts.

Authors:  M N Cornforth; J S Bedford
Journal:  Radiat Res       Date:  1987-09       Impact factor: 2.841

6.  A new open-source GPU-based microscopic Monte Carlo simulation tool for the calculations of DNA damages caused by ionizing radiation - Part II: sensitivity and uncertainty analysis.

Authors:  Youfang Lai; Min-Yu Tsai; Zhen Tian; Nan Qin; Congchong Yan; Shih-Hao Hung; Yujie Chi; Xun Jia
Journal:  Med Phys       Date:  2020-02-14       Impact factor: 4.071

7.  A new open-source GPU-based microscopic Monte Carlo simulation tool for the calculations of DNA damages caused by ionizing radiation --- Part I: Core algorithm and validation.

Authors:  Min-Yu Tsai; Zhen Tian; Nan Qin; Congchong Yan; Youfang Lai; Shih-Hao Hung; Yujie Chi; Xun Jia
Journal:  Med Phys       Date:  2020-02-14       Impact factor: 4.071

8.  The non-homologous end-joining (NHEJ) pathway for the repair of DNA double-strand breaks: I. A mathematical model.

Authors:  Reza Taleei; Hooshang Nikjoo
Journal:  Radiat Res       Date:  2013-04-05       Impact factor: 2.841

9.  Efficient voxel navigation for proton therapy dose calculation in TOPAS and Geant4.

Authors:  J Schümann; H Paganetti; J Shin; B Faddegon; J Perl
Journal:  Phys Med Biol       Date:  2012-05-09       Impact factor: 3.609

10.  Comprehensive track-structure based evaluation of DNA damage by light ions from radiotherapy-relevant energies down to stopping.

Authors:  W Friedland; E Schmitt; P Kundrát; M Dingfelder; G Baiocco; S Barbieri; A Ottolenghi
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

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  7 in total

1.  A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio.

Authors:  Hongyu Zhu; Aimee L McNamara; Jose Ramos-Mendez; Stephen J McMahon; Nicholas T Henthorn; Bruce Faddegon; Kathryn D Held; Joseph Perl; Junli Li; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2020-04-23       Impact factor: 3.609

2.  Impact of DNA Geometry and Scoring on Monte Carlo Track-Structure Simulations of Initial Radiation-Induced Damage.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Aimee McNamara; Dohyeon Yoo; Samuel Ingram; Nicholas Henthorn; John-William Warmenhoven; Bruce Faddegon; Michael Merchant; Stephen J McMahon; Harald Paganetti; Jan Schuemann
Journal:  Radiat Res       Date:  2022-09-01       Impact factor: 3.372

3.  TOPAS-nBio validation for simulating water radiolysis and DNA damage under low-LET irradiation.

Authors:  J Ramos-Méndez; J A LaVerne; N Domínguez-Kondo; J Milligan; V Štěpán; K Stefanová; Y Perrot; C Villagrasa; W-G Shin; S Incerti; A McNamara; H Paganetti; J Perl; J Schuemann; B Faddegon
Journal:  Phys Med Biol       Date:  2021-09-03       Impact factor: 4.174

4.  Nanoscale Calculation of Proton-Induced DNA Damage Using a Chromatin Geometry Model with Geant4-DNA.

Authors:  Kun Zhu; Chun Wu; Xiaoyu Peng; Xuantao Ji; Siyuan Luo; Yuchen Liu; Xiaodong Wang
Journal:  Int J Mol Sci       Date:  2022-06-06       Impact factor: 6.208

5.  The relation between microdosimetry and induction of direct damage to DNA by alpha particles.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2021-07-30       Impact factor: 4.174

6.  LET-Dependent Intertrack Yields in Proton Irradiation at Ultra-High Dose Rates Relevant for FLASH Therapy.

Authors:  J Ramos-Méndez; N Domínguez-Kondo; J Schuemann; A McNamara; E Moreno-Barbosa; Bruce Faddegon
Journal:  Radiat Res       Date:  2020-10-02       Impact factor: 2.841

7.  A Mechanistic DNA Repair and Survival Model (Medras): Applications to Intrinsic Radiosensitivity, Relative Biological Effectiveness and Dose-Rate.

Authors:  Stephen Joseph McMahon; Kevin M Prise
Journal:  Front Oncol       Date:  2021-06-29       Impact factor: 6.244

  7 in total

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