Literature DB >> 31109825

Evaluation of early radiation DNA damage in a fractal cell nucleus model using Geant4-DNA.

Dousatsu Sakata1, Nathanael Lampe2, Mathieu Karamitros3, Ioanna Kyriakou4, Oleg Belov5, Mario A Bernal6, David Bolst1, Marie-Claude Bordage7, Vincent Breton8, Jeremy M C Brown9, Ziad Francis10, Vladimir Ivanchenko11, Sylvain Meylan12, Koichi Murakami13, Shogo Okada13, Ivan Petrovic14, Aleksandra Ristic-Fira14, Giovanni Santin15, David Sarramia8, Takashi Sasaki13, Wook-Geun Shin2, Nicolas Tang16, Hoang N Tran17, Carmen Villagrasa16, Dimitris Emfietzoglou4, Petteri Nieminen15, Susanna Guatelli1, Sebastien Incerti18.   

Abstract

The advancement of multidisciplinary research fields dealing with ionising radiation induced biological damage - radiobiology, radiation physics, radiation protection and, in particular, medical physics - requires a clear mechanistic understanding of how cellular damage is induced by ionising radiation. Monte Carlo (MC) simulations provide a promising approach for the mechanistic simulation of radiation transport and radiation chemistry, towards the in silico simulation of early biological damage. We have recently developed a fully integrated MC simulation that calculates early single strand breaks (SSBs) and double strand breaks (DSBs) in a fractal chromatin based human cell nucleus model. The results of this simulation are almost equivalent to past MC simulations when considering direct/indirect strand break fraction, DSB yields and fragment distribution. The simulation results agree with experimental data on DSB yields within 13.6% on average and fragment distributions agree within an average of 34.8%.
Copyright © 2019 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA damage; Geant4-DNA; Monte Carlo simulation

Mesh:

Year:  2019        PMID: 31109825     DOI: 10.1016/j.ejmp.2019.04.010

Source DB:  PubMed          Journal:  Phys Med        ISSN: 1120-1797            Impact factor:   2.685


  15 in total

1.  Independent reaction times method in Geant4-DNA: Implementation and performance.

Authors:  José Ramos-Méndez; Wook-Geun Shin; Mathieu Karamitros; Jorge Domínguez-Kondo; Ngoc Hoang Tran; Sebastien Incerti; Carmen Villagrasa; Yann Perrot; Václav Štěpán; Shogo Okada; Eduardo Moreno-Barbosa; Bruce Faddegon
Journal:  Med Phys       Date:  2020-10-15       Impact factor: 4.071

2.  A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio.

Authors:  Hongyu Zhu; Aimee L McNamara; Jose Ramos-Mendez; Stephen J McMahon; Nicholas T Henthorn; Bruce Faddegon; Kathryn D Held; Joseph Perl; Junli Li; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2020-04-23       Impact factor: 3.609

3.  Cellular Response to Proton Irradiation: A Simulation Study with TOPAS-nBio.

Authors:  Hongyu Zhu; Aimee L McNamara; Stephen J McMahon; Jose Ramos-Mendez; Nicholas T Henthorn; Bruce Faddegon; Kathryn D Held; Joseph Perl; Junli Li; Harald Paganetti; Jan Schuemann
Journal:  Radiat Res       Date:  2020-07-08       Impact factor: 2.841

4.  Performance Evaluation for Repair of HSGc-C5 Carcinoma Cell Using Geant4-DNA.

Authors:  Dousatsu Sakata; Masao Suzuki; Ryoichi Hirayama; Yasushi Abe; Masayuki Muramatsu; Shinji Sato; Oleg Belov; Ioanna Kyriakou; Dimitris Emfietzoglou; Susanna Guatelli; Sebastien Incerti; Taku Inaniwa
Journal:  Cancers (Basel)       Date:  2021-11-30       Impact factor: 6.639

5.  Impact of DNA Geometry and Scoring on Monte Carlo Track-Structure Simulations of Initial Radiation-Induced Damage.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Aimee McNamara; Dohyeon Yoo; Samuel Ingram; Nicholas Henthorn; John-William Warmenhoven; Bruce Faddegon; Michael Merchant; Stephen J McMahon; Harald Paganetti; Jan Schuemann
Journal:  Radiat Res       Date:  2022-09-01       Impact factor: 3.372

6.  TOPAS-nBio validation for simulating water radiolysis and DNA damage under low-LET irradiation.

Authors:  J Ramos-Méndez; J A LaVerne; N Domínguez-Kondo; J Milligan; V Štěpán; K Stefanová; Y Perrot; C Villagrasa; W-G Shin; S Incerti; A McNamara; H Paganetti; J Perl; J Schuemann; B Faddegon
Journal:  Phys Med Biol       Date:  2021-09-03       Impact factor: 4.174

7.  Multi-scale Monte Carlo simulations of gold nanoparticle-induced DNA damages for kilovoltage X-ray irradiation in a xenograft mouse model using TOPAS-nBio.

Authors:  Alexander P Klapproth; Jan Schuemann; Stefan Stangl; Tianwu Xie; Wei Bo Li; Gabriele Multhoff
Journal:  Cancer Nanotechnol       Date:  2021-10-24

8.  New damage model for simulating radiation-induced direct damage to biomolecular systems and experimental validation using pBR322 plasmid.

Authors:  Jinhyung Park; Kwang-Woo Jung; Min Kyu Kim; Hui-Jeong Gwon; Jong-Hyun Jung
Journal:  Sci Rep       Date:  2022-07-05       Impact factor: 4.996

9.  A detailed experimental and Monte Carlo analysis of gold nanoparticle dose enhancement using 6 MV and 18 MV external beam energies in a macroscopic scale.

Authors:  Tara Gray; Nema Bassiri; Shaquan David; Devanshi Yogeshkumar Patel; Sotirios Stathakis; Neil Kirby; Kathryn M Mayer
Journal:  Appl Radiat Isot       Date:  2021-02-10       Impact factor: 1.513

10.  The relation between microdosimetry and induction of direct damage to DNA by alpha particles.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2021-07-30       Impact factor: 4.174

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