| Literature DB >> 32395748 |
Yiwen Zhang1,2, Xiaoxia Zhang2, Zumin Xing2, Shuyi Tang2, Hanwen Chen2, Zhongqi Zhang2, Jiyuan Li2, Yalan Li1.
Abstract
Bone cancer pain (BCP) is a common chronic pain that is caused by a primary or metastatic bone tumor. More detailed molecular mechanisms of BCP are warranted. In this study, we established a BCP rat model. The von Frey hair test, body weight, and hematoxylin and eosin staining were employed. We screened differentially expressed circRNAs (DECs) between the BCP group and sham group. The results revealed that 850 DECs were significantly up-regulated and 644 DECs were significantly down-regulated in the BCP group. Furthermore, we identified 1177 differentially expressed genes (DEGs) significantly up-regulated and 565 DEGs significantly down-regulated in the BCP group. Gene Ontology annotation of all 1742 DEGs revealed that biological regulation of metabolic processes, cellular processes, and binding were the top enriched terms. For Kyoto Encyclopedia of Genes and Genomes analysis, phagosome, HTLV-I infection, proteoglycans in cancer, and herpes simplex infection were significantly enriched in this study. In addition, we identified four selected circRNAs, chr6:72418120|72430205, chr20:7561057|7573740, chr18:69943105|69944476, and chr5:167516581|167558250, by quantitative real time PCR. chr6:72418120|72430205 (circStrn3) was selected for further study based on expression level and the circRNA-miRNA-mRNA network table. Western blot analysis suggested that knockdown of circStrn3 could effectively induce Walker 256 cell apoptosis. In summary, our study provided a more in-depth understanding of the molecular mechanisms of BCP.Entities:
Keywords: bone cancer pain; circRNAs; circStrn3; differentially expressed genes
Mesh:
Substances:
Year: 2020 PMID: 32395748 PMCID: PMC7270972 DOI: 10.1093/abbs/gmaa018
Source DB: PubMed Journal: Acta Biochim Biophys Sin (Shanghai) ISSN: 1672-9145 Impact factor: 3.848
Sequence of primers used in PCR
| Gene ID | Sequence (5′ →3′) | Product length (bp) |
|---|---|---|
| chr6:72418120|72430205-circRNA forward | GTACAGAATGGGGCACGAAT | 190 |
| chr6:72418120|72430205-circRNA reverse | CTGATTCAAAGGTGGGCATT | |
| chr6:72418120|72430205-linear RNA forward | GCTGCTGACTTAACTGATGATCC | 117 |
| chr6:72418120|72430205-linear RNA reverse | TGTACCATCCCCTGAACTCC | |
| chr20:7561057|7573740-circRNA forward | ACAGACGGGAGGACTGAAGA | 224 |
| chr20:7561057|7573740-circRNA reverse | TAGTGCTGCAGCTCAGGAGA | |
| chr20:7561057|7573740-linear RNA forward | CCACACGGAGGTAGTGAAGG | 161 |
| chr20:7561057|7573740-linear RNA reverse | TAGTGCTGCAGCTCAGGAGA | |
| chr18:69943105|69944476-circRNA forward | CGAGGAGCACGCTAAGCTAT | 196 |
| chr18:69943105|69944476-circRNA reverse | AGACAGTCCCCTTCCCTTGT | |
| chr18:69943105|69944476-linear RNA forward | GACTGCATCGCCAGTGTCTA | 222 |
| chr18:69943105|69944476-linear RNA reverse | TTTGACGATGTTGTCGTGGT | |
| chr5:167516581|167558250-circRNA forward | GTTCCACAGAGGATGGCTGT | 218 |
| chr5:167516581|167558250-circRNA reverse | CCGGTTCTTGATGACTGGAT | |
| chr5:167516581|167558250-linear RNA forward | TGTTCCCGAGTTCTTGCTCT | 191 |
| chr5:167516581|167558250-linear RNA reverse | GGAAGTGGGGCCTTAGAAAG |
Figure 1Changes of BCP-related indexes in rat model (A) The von Frey hair test of behavioral changes in BCP-treated rats. (B) Weight detection of BCP-treated rats. (C) H&E examination of tibia bone tissue damage in rats. Sham, control group; BCP, experimental group. *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001.
Figure 2High-throughput sequencing of circRNAs (A) The length distribution of obtained circRNAs. (B) Exon and intron distribution of detected circRNAs. (C) Chromosomal distribution of DECs between the two groups.
Figure 3Function analysis of the DECs between the BCP group and sham group (A,B) DECs were visualized between the two groups by scatter plot and hierarchical clustering analysis. (C) GO analysis of the DECs. (D) KEGG analysis of DECs. (E) The circRNA–miRNA–mRNA network.
Figure 4Function analysis of the DEGs between the BCP group and sham group (A,B) DEGs were visualized between the two groups by the scatter plot and hierarchical clustering analysis. (C) GO analysis of DEGs. (D) KEGG analysis of DEGs. (E) The mRNA–miRNA–circRNA network.
Figure 6Knockdown of circStrn3 may promote Walker 256 cell apoptosis (A) circStrn3 expression in Walker 256 cells with circStrn3 knockdown. (B) CCK-8 assay was used to measure Walker 256 cell proliferation upon knockdown of circStrn3. (C) Flow cytometry analysis of Walker 256 cells upon knockdown of circStrn3. (D) Western blot analysis of Walker 256 cells upon knockdown of circStrn3. (E) Semi-quantitative results of graph D. ***P < 0.001 and ****P < 0.0001.
Figure 5circRNA verification and expression analysis (A) qRT-PCR analysis of circRNA expression between the BCP group and sham group. (B) Four circRNAs were amplified using divergent and convergent primers with cDNA and gDNA of both groups. circRNA could only be amplified using cDNA templates. M: DNA molecular markers. The sizes of the two bands are 200 bp and 100 bp. (C) The head-to-tail back splicing of four circRNAs was confirmed by Sanger sequencing. The black arrow indicates the junction sequences of circRNA. *P < 0.05 and **P < 0.01.