Literature DB >> 27246710

Circular RNAs: analysis, expression and potential functions.

Steven P Barrett1, Julia Salzman2.   

Abstract

Just a few years ago, it had been assumed that the dominant RNA isoforms produced from eukaryotic genes were variants of messenger RNA, functioning as intermediates in gene expression. In early 2012, however, a surprising discovery was made: circular RNA (circRNA) was shown to be a transcriptional product in thousands of human and mouse genes and in hundreds of cases constituted the dominant RNA isoform. Subsequent studies revealed that the expression of circRNAs is developmentally regulated, tissue and cell-type specific, and shared across the eukaryotic tree of life. These features suggest important functions for these molecules. Here, we describe major advances in the field of circRNA biology, focusing on the regulation of and functional roles played by these molecules.
© 2016. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  CircRNA; Development; Non-coding RNA; Regulation; Splicing

Mesh:

Substances:

Year:  2016        PMID: 27246710      PMCID: PMC4920157          DOI: 10.1242/dev.128074

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  66 in total

1.  Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.

Authors:  M Higuchi; S Maas; F N Single; J Hartner; A Rozov; N Burnashev; D Feldmeyer; R Sprengel; P H Seeburg
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

2.  Template switching by reverse transcriptase during DNA synthesis.

Authors:  G X Luo; J Taylor
Journal:  J Virol       Date:  1990-09       Impact factor: 5.103

3.  MicroRNA: microRNAs reach out into dendrites.

Authors:  Hwan-Ching Tai; Erin M Schuman
Journal:  Curr Biol       Date:  2006-02-21       Impact factor: 10.834

4.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

5.  Substrate recognition and catalysis by the exoribonuclease RNase R.

Authors:  Helen A Vincent; Murray P Deutscher
Journal:  J Biol Chem       Date:  2006-08-07       Impact factor: 5.157

6.  A circularized sodium-calcium exchanger exon 2 transcript.

Authors:  X F Li; J Lytton
Journal:  J Biol Chem       Date:  1999-03-19       Impact factor: 5.157

Review 7.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

8.  Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans.

Authors:  Ali R Awan; Amanda Manfredo; Jeffrey A Pleiss
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-16       Impact factor: 11.205

Review 9.  Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers.

Authors:  Zhiyu Peng; Chengfu Yuan; Lucas Zellmer; Siqi Liu; Ningzhi Xu; D Joshua Liao
Journal:  J Cancer       Date:  2015-05-01       Impact factor: 4.207

10.  Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors:  Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2015-10-08       Impact factor: 11.361

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  287 in total

1.  Genomic Tools for Environmental Epigenetics and Implications for Public Health.

Authors:  Bambarendage P U Perera; Laurie Svoboda; Dana C Dolinoy
Journal:  Curr Opin Toxicol       Date:  2019-03-08

Review 2.  Circular RNAs: A Novel Class of Functional RNA Molecules with a Therapeutic Perspective.

Authors:  Laura Santer; Christian Bär; Thomas Thum
Journal:  Mol Ther       Date:  2019-07-09       Impact factor: 11.454

3.  More Pieces of Ancient than Recent Theoretical Minimal Proto-tRNA-Like RNA Rings in Genes Coding for tRNA Synthetases.

Authors:  Jacques Demongeot; Hervé Seligmann
Journal:  J Mol Evol       Date:  2019-04-05       Impact factor: 2.395

4.  Circbank: a comprehensive database for circRNA with standard nomenclature.

Authors:  Ming Liu; Qian Wang; Jian Shen; Burton B Yang; Xiangming Ding
Journal:  RNA Biol       Date:  2019-04-25       Impact factor: 4.652

Review 5.  Minor and major circRNAs in virus and host genomes.

Authors:  Zhihao Lou; Rui Zhou; Yinghua Su; Chun Liu; Wenting Ruan; Che Ok Jeon; Xiao Han; Chun Lin; Baolei Jia
Journal:  J Microbiol       Date:  2021-02-23       Impact factor: 3.422

Review 6.  Insights into circular RNA biology.

Authors:  Karoline K Ebbesen; Thomas B Hansen; Jørgen Kjems
Journal:  RNA Biol       Date:  2016-12-16       Impact factor: 4.652

7.  Identification and characterization of circular RNAs during the sea buckthorn fruit development.

Authors:  Guoyun Zhang; Songfeng Diao; Tong Zhang; Daoguo Chen; Caiyun He; Jianguo Zhang
Journal:  RNA Biol       Date:  2019-01-29       Impact factor: 4.652

8.  Expression of circular RNAs during C2C12 myoblast differentiation and prediction of coding potential based on the number of open reading frames and N6-methyladenosine motifs.

Authors:  Rui Chen; Ting Jiang; Si Lei; Yanling She; Huacai Shi; Shanyao Zhou; Jun Ou; Yulin Liu
Journal:  Cell Cycle       Date:  2018-08-16       Impact factor: 4.534

Review 9.  The evolution and clinical impact of hepatitis B virus genome diversity.

Authors:  Peter A Revill; Thomas Tu; Hans J Netter; Lilly K W Yuen; Stephen A Locarnini; Margaret Littlejohn
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-05-28       Impact factor: 46.802

10.  Circular RNA circRPPH1 promotes triple-negative breast cancer progression via the miR-556-5p/YAP1 axis.

Authors:  Yehui Zhou; Xiaorong Liu; Jing Lan; Yuqiu Wan; Xun Zhu
Journal:  Am J Transl Res       Date:  2020-10-15       Impact factor: 4.060

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