Literature DB >> 33607084

Real-time observation of structure and dynamics during the liquid-to-solid transition of FUS LC.

Raymond F Berkeley1, Maryam Kashefi1, Galia T Debelouchina2.   

Abstract

A subset of the proteins found in pathological protein fibrils also exhibit tendencies for liquid-liquid phase separation (LLPS) both in vitro and in cells. The mechanisms underlying the connection between these phase transitions have been challenging to study due to the heterogeneous and dynamic nature of the states formed during the maturation of LLPS protein droplets into gels and solid aggregates. Here, we interrogate the liquid-to-solid transition of the low-complexity domain of the RNA-binding protein FUS (FUS LC), which has been shown to adopt LLPS, gel-like, and amyloid states. We employ magic-angle-spinning NMR spectroscopy, which has allowed us to follow these transitions in real time and with residue-specific resolution. We observe the development of β-sheet structure through the maturation process and show that the final state of FUS LC fibrils produced after LLPS is distinct from that grown from fibrillar seeds. We also apply our methodology to FUS LC G156E, a clinically relevant FUS mutant that exhibits accelerated fibrillization rates. We observe significant changes in dynamics during the transformation of the FUS LC G156E construct and begin to unravel the sequence specific contributions to this phenomenon with computational studies of the phase-separated state of FUS LC and FUS LC G156E.
Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 33607084      PMCID: PMC8059203          DOI: 10.1016/j.bpj.2021.02.008

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  66 in total

1.  Amyloid-like interactions within nucleoporin FG hydrogels.

Authors:  Christian Ader; Steffen Frey; Werner Maas; Hermann Broder Schmidt; Dirk Görlich; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-18       Impact factor: 11.205

2.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

3.  Determination of membrane protein structure and dynamics by magic-angle-spinning solid-state NMR spectroscopy.

Authors:  Ovidiu C Andronesi; Stefan Becker; Karsten Seidel; Henrike Heise; Howard S Young; Marc Baldus
Journal:  J Am Chem Soc       Date:  2005-09-21       Impact factor: 15.419

4.  Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.

Authors:  Dylan T Murray; Masato Kato; Yi Lin; Kent R Thurber; Ivan Hung; Steven L McKnight; Robert Tycko
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

5.  Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.

Authors:  Benjamin S Schuster; Gregory L Dignon; Wai Shing Tang; Fleurie M Kelley; Aishwarya Kanchi Ranganath; Craig N Jahnke; Alison G Simpkins; Roshan Mammen Regy; Daniel A Hammer; Matthew C Good; Jeetain Mittal
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

6.  Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.

Authors:  Kathleen A Burke; Abigail M Janke; Christy L Rhine; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

7.  Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.

Authors:  Amandine Molliex; Jamshid Temirov; Jihun Lee; Maura Coughlin; Anderson P Kanagaraj; Hong Joo Kim; Tanja Mittag; J Paul Taylor
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

Review 8.  Classification of intrinsically disordered regions and proteins.

Authors:  Robin van der Lee; Marija Buljan; Benjamin Lang; Robert J Weatheritt; Gary W Daughdrill; A Keith Dunker; Monika Fuxreiter; Julian Gough; Joerg Gsponer; David T Jones; Philip M Kim; Richard W Kriwacki; Christopher J Oldfield; Rohit V Pappu; Peter Tompa; Vladimir N Uversky; Peter E Wright; M Madan Babu
Journal:  Chem Rev       Date:  2014-04-29       Impact factor: 60.622

9.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

10.  ImageJ2: ImageJ for the next generation of scientific image data.

Authors:  Curtis T Rueden; Johannes Schindelin; Mark C Hiner; Barry E DeZonia; Alison E Walter; Ellen T Arena; Kevin W Eliceiri
Journal:  BMC Bioinformatics       Date:  2017-11-29       Impact factor: 3.169

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  7 in total

1.  Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants.

Authors:  Abhinaw Kumar; Debayan Chakraborty; Mauro Lorenzo Mugnai; John E Straub; D Thirumalai
Journal:  J Phys Chem Lett       Date:  2021-09-13       Impact factor: 6.888

2.  Faces, facets, and functions of biomolecular condensates driven by multivalent proteins and nucleic acids.

Authors:  Jason D Kahn; Edward A Lemke; Rohit V Pappu
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

Review 3.  Biophysical studies of phase separation integrating experimental and computational methods.

Authors:  Nicolas L Fawzi; Sapun H Parekh; Jeetain Mittal
Journal:  Curr Opin Struct Biol       Date:  2021-06-15       Impact factor: 7.786

4.  Improved coarse-grained model for studying sequence dependent phase separation of disordered proteins.

Authors:  Roshan Mammen Regy; Jacob Thompson; Young C Kim; Jeetain Mittal
Journal:  Protein Sci       Date:  2021-05-24       Impact factor: 6.993

5.  m6A Modified Short RNA Fragments Inhibit Cytoplasmic TLS/FUS Aggregation Induced by Hyperosmotic Stress.

Authors:  Ryoma Yoneda; Naomi Ueda; Riki Kurokawa
Journal:  Int J Mol Sci       Date:  2021-10-12       Impact factor: 5.923

6.  Atomic resolution dynamics of cohesive interactions in phase-separated Nup98 FG domains.

Authors:  Eszter E Najbauer; Sheung Chun Ng; Christian Griesinger; Dirk Görlich; Loren B Andreas
Journal:  Nat Commun       Date:  2022-03-21       Impact factor: 17.694

Review 7.  A Time-Resolved Diffusion Technique for Detection of the Conformational Changes and Molecular Assembly/Disassembly Processes of Biomolecules.

Authors:  Yusuke Nakasone; Masahide Terazima
Journal:  Front Genet       Date:  2021-06-30       Impact factor: 4.599

  7 in total

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