Klaudia Szeler1, Nicholas H Williams2, Alvan C Hengge3, Shina C L Kamerlin1. 1. Department of Chemistry - BMC, Uppsala University, BMC Box 576, S-751 23 Uppsala, Sweden. 2. Department of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K. 3. Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
Abstract
Phosphate and sulfate esters have important roles in regulating cellular processes. However, while there has been substantial experimental and computational investigation of the mechanisms and the transition states involved in phosphate ester hydrolysis, there is far less work on sulfate ester hydrolysis. Here, we report a detailed computational study of the alkaline hydrolysis of diaryl sulfate diesters, using different DFT functionals as well as mixed implicit/explicit solvation with varying numbers of explicit water molecules. We consider the impact of the computational model on computed linear free-energy relationships (LFER) and the nature of the transition states (TS) involved. We obtain good qualitative agreement with experimental LFER data when using a pure implicit solvent model and excellent agreement with experimental kinetic isotope effects for all models used. Our calculations suggest that sulfate diester hydrolysis proceeds through loose transition states, with minimal bond formation to the nucleophile and bond cleavage to the leaving group already initiated. Comparison to prior work indicates that these TS are similar in nature to those for the alkaline hydrolysis of neutral arylsulfonate monoesters or charged phosphate diesters and fluorophosphates. Obtaining more detailed insights into the transition states involved assists in understanding the selectivity of enzymes that hydrolyze these reactions.
Phosphate and sulfate esters have important roles in regulating cellular processes. However, while there has been substantial experimental and computational investigation of the mechanisms and the transition states involved in phosphate ester hydrolysis, there is far less work on sulfate ester hydrolysis. Here, we report a detailed computational study of the alkaline hydrolysis of diaryl sulfate diesters, using different DFT functionals as well as mixed implicit/explicit solvation with varying numbers of explicit water molecules. We consider the impact of the computational model on computed linear free-energy relationships (LFER) and the nature of the transition states (TS) involved. We obtain good qualitative agreement with experimental LFER data when using a pure implicit solvent model and excellent agreement with experimental kinetic isotope effects for all models used. Our calculations suggest that sulfate diester hydrolysis proceeds through loose transition states, with minimal bond formation to the nucleophile and bond cleavage to the leaving group already initiated. Comparison to prior work indicates that these TS are similar in nature to those for the alkaline hydrolysis of neutral arylsulfonate monoesters or charged phosphate diesters and fluorophosphates. Obtaining more detailed insights into the transition states involved assists in understanding the selectivity of enzymes that hydrolyze these reactions.
The hydrolysis of both
phosphate and sulfate esters is ubiquitous
in biology and plays important roles in numerous cellular processes,
including in particular the regulation of cellular signaling processes.[1,2] Therefore, unsurprisingly, the enzymes that catalyze these reactions
are involved in a range of human diseases, making them important drug
targets.[3−5] In addition, many phosphatases also possess promiscuous
sulfatase activity,[6] and such promiscuity
is likely to be of evolutionary significance for these enzymes.[7−11] While there has been substantial research focus on understanding
enzymatic phosphate and sulfate hydrolysis (for reviews, see, e.g.,
refs (2, 6, 12), and the references cited therein), understanding the corresponding
non-enzymatic hydrolysis of these compounds is also important in order
to provide insights into the fundamental chemistry and the nature
of the transition states involved. Here, the lion’s share of
research has focused on understanding phosphoryl transfer reactions
using both experimental and computational approaches, and studies
of linear free-energy relationships (LFER), kinetic isotope effects
(KIE), and activation entropies, complemented by computational modeling,
have provided significant insights into the reactivity of these compounds
(for detailed reviews, see, e.g., ref (2)).In contrast, there has been far less
research effort invested into
studying non-enzymatic sulfate hydrolysis, and, in particular, while
there have been a number of elegant experimental studies of sulfate
ester hydrolysis, corresponding computational studies have been very
limited. Both experimental[11,13−22] and computational[23−25] studies of sulfate monoester hydrolysis suggest that
the transition states for these reactions are mechanistically similar
to those of their corresponding phosphate monoesters, proceeding through
concerted pathways with loose (concerted but dissociative in character)
transition states, with little bond formation to the nucleophile and
advanced bond cleavage to the leaving group, resulting in a SO3-like sulfuryl group. This is supported by the similar kinetic
parameters,[14,18] linear free-energy relationships,[13−17] and kinetic isotope effects[18,19] for the hydrolysis
of sulfate and phosphate monoesters. In addition, studies of the pH
dependence of these reactions show a broad pH-independent region between
pH 4 and 12[13,14,19,26] (where hydrolysis likely proceeds by S–O
rather than C–O bond cleavage) and a hydrolysis rate that is
accelerated under strongly acidic or basic conditions.[14,27] Computational comparison of the hydrolysis of p-nitrophenyl phosphate and sulfate monoesters provides a similar
mechanistic picture for these reactions,[25] although the transition state for the hydrolysis of the sulfate
monoester was calculated to be slightly more compact than that for
the corresponding phosphate monoester. This is likely due to the fact
that in contrast to the phosphate monoester dianion, the sulfate monoester
is monoanionic.In the case of sulfate diester hydrolysis, the
majority of reported
studies involve the reactivity of either dialkyl or aryl alkyl sulfate
diesters in which the reaction proceeds by attack at carbon with C–O
rather than S–O bond cleavage.[28,29] In contrast,
experimental work indicates that the alkaline hydrolysis of diarylsulfate diesters proceeds through nucleophilic attack at sulfur (Figure ),[30] making it possible to compare the transition states for
these reactions to those obtained in our prior work on the alkaline
hydrolysis of related compounds such as sulfate and phosphate monoesters,
arylphosphate diesters, fluorophosphates, pyridinio-N-phosphonates,
and neutral sulfonate monoesters.[25,31−35] In all three cases, both experimental and computational works suggest
that these reactions still proceed through concerted but tighter transition
states than those observed in the case of phosphate and sulfate monoesters,
and it would therefore not be implausible to assume that the same
holds true also for neutral diaryl sulfate diesters (Figure ). This would not be inconsistent
with experimental data,[30] which provides
a slope, βlg, of −0.7 ± 0.2 for the alkaline
hydrolysis of a series of diaryl sulfate diesters (compared to a reported
value of −1.81 ± 0.09 for aryl sulfate monoesters[22]) and 15k and 18klg KIE of 1.0000 ± 0.0005
and 1.003 ± 0.002, respectively, for hydroxide attack on p-nitrophenyl sulfate. However, there are no experimental
data pertaining to the degree of nucleophilic involvement.
Figure 1
Overview of
different mechanistic possibilities for the alkaline
hydrolysis of the arylsulfate diesters studied in this work, as illustrated
on a More O’Ferrall–Jencks plot.[36,37] Shown here are both mechanistic extremes of fully associative (AN+DN, top left) and fully dissociative (DN+AN, bottom right) pathways. The dashed line indicates
a concerted (ANDN, center) pathway with concomitant
bond formation to the nucleophile and bond cleavage to the leaving
group; note that although we have drawn the line through the center
of the plot, these transition states can potentially be either dissociative
or associative in nature, depending on whether bond formation to the
nucleophile precedes or follows bond formation to the leaving group.
In addition, the “products” (top right) would be expected
to rapidly undergo proton transfer to form PhOSO3– and ArOH (adapted with permission from ref (30) (direct link: https://pubs.acs.org/doi/abs/10.1021/jo0488309). Copyright 2004 American Chemical Society).
Overview of
different mechanistic possibilities for the alkaline
hydrolysis of the arylsulfate diesters studied in this work, as illustrated
on a More O’Ferrall–Jencks plot.[36,37] Shown here are both mechanistic extremes of fully associative (AN+DN, top left) and fully dissociative (DN+AN, bottom right) pathways. The dashed line indicates
a concerted (ANDN, center) pathway with concomitant
bond formation to the nucleophile and bond cleavage to the leaving
group; note that although we have drawn the line through the center
of the plot, these transition states can potentially be either dissociative
or associative in nature, depending on whether bond formation to the
nucleophile precedes or follows bond formation to the leaving group.
In addition, the “products” (top right) would be expected
to rapidly undergo proton transfer to form PhOSO3– and ArOH (adapted with permission from ref (30) (direct link: https://pubs.acs.org/doi/abs/10.1021/jo0488309). Copyright 2004 American Chemical Society).In the present work, we perform a detailed comparison of the alkaline
hydrolysis of a series of diaryl sulfate diesters with leaving groups
of varying pKa (Figure ),[30] using three
different density functionals and comparing both pure implicit solvent
and mixed implicit/explicit solvation for comparison to our prior
work.[25,34,38] We show that
the slope of the calculated LFER is highly dependent both on the functional
used and on the number of explicit water molecules introduced into
the system but that in all cases, we are able to obtain good agreement
with experimental KIE irrespective of the functional used or the number
of water molecules. We also compare our calculated transition states
to those obtained in our previous computational studies of related
compounds[25,31−35] and confirm that like other analogous compounds,
the alkaline hydrolysis of sulfate diesters proceed through tighter
concerted transition states than those obtained for the hydrolyses
of related phosphate and sulfate monoesters.
Figure 2
Overview of the compounds
studied in this work, based on the experimental
work presented in ref (30).
Overview of the compounds
studied in this work, based on the experimental
work presented in ref (30).
Methodology
We have performed density
functional theory (DFT) calculations
of the alkaline hydrolysis of diaryl sulfate diesters shown in Figure , using the M11L,[39] M062X,[40] and ωB97X-D.[41] All transition states were initially optimized
using the M11L functional, with the final optimized structures being
reoptimized using either the M062X or the ωB97X-D functionals.
We note that in a small number of cases, direct reoptimization was
not possible, as the transition state optimization never converged.
These optimizations were therefore initiated from different starting
points. Specifically, the starting structure for the final transition
state for 2,3,4,5,6-pentafluoro sulfate in the presence of two explicit
water molecules, optimized using the M062X functional, was the ωB97X-D-optimized
transition state rather than the M11L-optimized state. In the case
of the transition states for the hydrolysis of 2,6-difluoro and 2-fluoro-4-nitrophenyl
sulfate, optimized with the M11L functional in the presence of eight
water molecules, these structures were optimized using the transition
states for 2-fluoro-4-nitrophenyl and 3-fluoro-4-nitrophenyl sulfate
as starting structures, respectively. All other structures converged
normally and were therefore obtained as initially described above.Initial transition state optimizations were performed using the
6-31+G* basis set and the SMD solvation model, with the addition of
between 0 and 8 explicit water molecules to the system. The water
molecules were added to the system one by one in a symmetrical fashion
(i.e., sequentially adding an additional water molecule to either
the nucleophile or leaving group side of each optimized transition
state and reoptimizing the new transition state, ensuring that each
time a new water molecule is added to the system, it forms a hydrogen
bonding interaction with a hydrogen bond acceptor on the sulfate diester).
The water molecules were added in such a way as to saturate all possible
hydrogen bonding interactions with the sulfate diester. The resulting
transition states were characterized both by frequency calculations
at the same level of theory and by following the intrinsic reaction
coordinate (IRC)[42,43] in both the reactant and product
directions followed by optimization to the actual reactant and product.
These structures were first optimized using an UltraFine integration
grid, and the optimized stationary points were reoptimized using a
SuperFine integration grid. The resulting absolute energies and Cartesian
coordinates of all optimized stationary points are provided in the Supporting Information.Bond orders, frequencies,
zero-point energies, and entropies were
all calculated at 313.15 K from the final optimized structures at
the same level of theory, whereas the electronic energies were obtained
by performing single point calculations using the larger 6-311+G**
basis set. The partial charges were obtained using the CHarges from
ELectrostatic Potentials using a Grid-based method (CHELPG) charge
calculation scheme[44] using the 6-31G* basis
set, and bond orders were calculated based on the Wiberg bond index[45] using natural bond orbital (NBO) analysis.[46] All quantum chemical calculations were performed
using Gaussian 16, Rev. B01.[47] Computed
rate constants for comparison to experiment were obtained by summing
the electronic energies and zero-point energies and entropies, with
the resulting free energies converted to rate constants using transition
state theory. Finally, kinetic isotope effects were calculated using
the Biegeleisen–Mayer equation[48] using the frequencies in the Gaussian output files and Kinisot (“Kinetic
Isotope Effects with Python”, developed by the Paton lab and
available for open source download from Zenodo, DOI: 10.5281/zenodo.60082), with
the 15N/14N isotopic replacement manually added
to the code.
Results and Discussion
Exploring the Impact of
Including Explicit Water Molecules in
the Simulations
In prior work on the hydrolysis of phosphate
monoester dianions and sulfate monoester monoanions, we demonstrated
that the inclusion of explicit water molecules into the system (in
addition to the implicit solvent model) can have a substantial impact
on the energies and geometries of the resulting optimized structures
and the ability to reproduce all the experimental data, including
isotope effects.[25] To assess whether that
is also the case for neutral diaryl sulfate diesters, we performed
geometry optimizations of key stationary points for the alkaline hydrolysis
of 4-nitrophenyl sulfate in the presence of 0 to 8 explicit water
molecules and using three different DFT functionals and examined the
impact of inclusion of these water molecules on the resulting activation
free energies, charge distributions, and geometries. The resulting
data are shown in Figure , Figure S1–S3, and Tables S1–S21.
Figure 3
Overview of the (A) activation free energies, (B) partial charges
at the transition state, (C) S–Onuc and S–Olg distances at the transition state, and (D) S–Onuc and S–Olg bond orders at the transition
state for the alkaline hydrolysis of 4-nitrophenyl sulfate with varying
numbers of water molecules, obtained using the ωB97X-D41 functional, as described in the Methodology section. Note that as the transition state distances barely change
with increasing numbers of water molecules (panel C), the transition
states described in terms of bond orders are therefore also very similar,
as can be seen from the overlap in the data in panel D. The calculated
activation free energy was obtained using transition state theory
at 313.15 K, based on kinetic data provided in ref (30). For the corresponding
data obtained using the M11L[39] and M062X[40] functionals, see Figures S1 and S2, and for the corresponding raw data, see Tables S1–S21.
Overview of the (A) activation free energies, (B) partial charges
at the transition state, (C) S–Onuc and S–Olg distances at the transition state, and (D) S–Onuc and S–Olg bond orders at the transition
state for the alkaline hydrolysis of 4-nitrophenyl sulfate with varying
numbers of water molecules, obtained using the ωB97X-D41 functional, as described in the Methodology section. Note that as the transition state distances barely change
with increasing numbers of water molecules (panel C), the transition
states described in terms of bond orders are therefore also very similar,
as can be seen from the overlap in the data in panel D. The calculated
activation free energy was obtained using transition state theory
at 313.15 K, based on kinetic data provided in ref (30). For the corresponding
data obtained using the M11L[39] and M062X[40] functionals, see Figures S1 and S2, and for the corresponding raw data, see Tables S1–S21.From these data, it can be seen that all three functionals grossly
underestimate the activation free energy to the hydrolysis reaction,
with the lowest energies provided by the M062X functional, the highest
by the ωB97X-D functional, and the M11L functional being an
intermediary between the other two functionals. This underestimation
is to be expected when modeling systems involving hydroxide as a nucleophile,
as discussed at length by both us and others elsewhere.[33,49−51] Therefore, our focus is not on whether a functional
does a good job of reproducing absolute experimental activation free
energies but rather whether our models can reproduce trends in experimental
observables (such as the slope of an LFER).In terms of trends,
it can be seen that there is considerable oscillation
in the calculated activation free energies, depending on the number
of explicit water molecules included in the system. This largely has
to do with the positioning of the explicit water molecules: It is
critical to introduce these water molecules symmetrically into the
system, saturating all available hydrogen bond donors/acceptors to
avoid accidentally over-stabilizing part of the system and obtaining
potentially spurious intermediates, as discussed in detail in refs (33) and (52). However, unlike in the
case of the charged species studied in most of our previous work,[25,31,32,34,35,38] the diarylsulfate diesters being studied in the present work are neutral species.
This means that while the explicit water molecules interact quite
nicely with the polarized transition state, the orientation of the
water molecules at the reactant and product states can be quite “distorted”
(for example, all water molecules clustering together and away from
the sulfate diester), suggesting that the sulfateoxygen atoms are
poorer hydrogen bond acceptors than the wateroxygen atoms. This then
leads also to a distortion in the position of the nucleophilic hydroxide
ion relative to the sulfur atom, moving it away from an ideal position
for in-line attack on the sulfur atom (see, e.g., Figure and Figures S4 and S5), which in turn impacts the calculated activation
free energies. That is, we obtain average ΔG‡calc of 12.8 ± 1.3, 10.3 ±
1.6, and 16.0 ± 1.6 using each of the M11L, M062X, and ωB97X-D
functionals, indicating that our calculated energies are less sensitive
to the number of explicit water molecules included in the system.
Similarly, the calculated geometries are also largely independent
of the number of water molecules included in the system, as can be
seen from Figure S3; while there are small
differences between the different density functionals, the data clusters
around each functional irrespective of the number of explicit water
molecules included in the system.
Figure 4
Representative structures of the ground,
transition, and product
states for the alkaline hydrolysis of 4-nitrophenyl sulfate obtained
using the ωB97X-D functional,[41] in
the presence of varying numbers of explicit solvent molecules, as
described in the Methodology section. The
calculated S–Onuc and S–Olg distances
are annotated for each optimized reacting state (in Å), and the
corresponding data obtained using the M11L[39] and M062X[40] functionals is shown in Figures S4 and S5, respectively. Finally, the
coordinates of all optimized stationary points are provided in the Supporting Information.
Representative structures of the ground,
transition, and product
states for the alkaline hydrolysis of 4-nitrophenyl sulfate obtained
using the ωB97X-D functional,[41] in
the presence of varying numbers of explicit solvent molecules, as
described in the Methodology section. The
calculated S–Onuc and S–Olg distances
are annotated for each optimized reacting state (in Å), and the
corresponding data obtained using the M11L[39] and M062X[40] functionals is shown in Figures S4 and S5, respectively. Finally, the
coordinates of all optimized stationary points are provided in the Supporting Information.Tying in with this, as there is little change in the transition
state geometry upon including additional explicit water molecules
into the system, unsurprisingly, the calculated 15k and 18klg KIE are
very stable irrespective of the density functional or number of explicit
water molecules, and all systems give relatively good agreement with
experiment (Table ). Here, it is worth pointing out that the observed 18klg values are at the low end of those
seen in any reaction with a nitrophenyl leaving group where the maximum
is ∼1.03.[53] While some of the calculated
values shown in Table are twice the experimental value, they are all at the low end of
the possible ranges of values for this effect and in that regard are
consistent with experiment. In addition, the negligible calculated 15k values are consistent with the experimental
value of unity.
Table 1
A Comparison of Experimental and Calculated
Kinetic Isotope Effects for the Alkaline Hydrolysis of 4-Nitrophenyl
Phenyl Sulfate with Varying Numbers of Explicit Water Moleculesa
experiment
ωB97X-D
M11L
M062X
water molecules
18klg
15k
18klg
15k
18klg
15k
18klg
15k
1.003 ± 0.002
1.0000 ± 0.0005
0
1.006
1.0012
1.003
1.0006
1.005
1.0008
1
1.006
1.0014
1.004
1.0010
1.006
1.0007
2
1.007
1.0009
1.003
1.0005
1.003
1.0010
3
1.007
1.0014
1.004
1.0005
1.004
1.0010
4
1.005
1.0007
1.003
1.0007
1.005
1.0005
5
1.006
1.0010
1.003
1.0005
1.002
1.0008
6
1.006
1.0013
1.006
1.0004
1.003
1.0007
7
1.006
1.0013
1.004
1.0006
1.005
1.0007
8
1.006
1.0013
1.005
1.0006
1.003
1.0007
The experimental KIE were obtained
from ref (30). The
computational KIE were obtained using the Biegeleisen–Mayer
equation[48] from vibrational frequencies
calculated using the ωB97X-D,[41] M11L,[39] and M062X[40] functionals,
as described in the Methodology section.
The experimental KIE were obtained
from ref (30). The
computational KIE were obtained using the Biegeleisen–Mayer
equation[48] from vibrational frequencies
calculated using the ωB97X-D,[41] M11L,[39] and M062X[40] functionals,
as described in the Methodology section.Indeed, the only significant
difference to any of the physical
properties of the transition state that is observed from including
the explicit water molecules is on the partial charges of the nucleophile,
leaving group, and central sulfur atom: once at least ∼5 water
molecules have been included into the system, the partial charge on
the nucleophile oxygen becomes significantly less negative compared
to that in the transition states calculated using an implicit solvent
alone, illustrating the stabilization of the charge on this oxygen
atom by the implicit solvent molecules (Tables S10–S12). This is coupled to a slight contraction on
the S–Onuc distance upon adding at least ∼5
water molecules to the system, although the corresponding change in
bond order is minimal (Tables S16–S18). However, it is clear that unlike in our previous calculations
of charged systems where there was significant benefit to including
additional water molecules in the system,[25,34,38] here, the water molecules appear to provide
minimal additional benefit in terms of describing the transition state
reliably and add only to computational cost.
Calculated LFER for the
Hydrolysis of Diaryl Sulfate Monoesters
Following from this,
we have calculated an LFER for the alkaline
hydrolysis of diaryl sulfate diesters, following the experimental
work of ref (30) and
based on the compounds shown in Figure . We have calculated these LFER using three different
density functionals as described in the Methodology section and in the presence of 0, 2, 4, or 8 explicit water molecules
in each case. The resulting LFER are presented in Figure , and the correlation between
calculated and experimental activation free energies in Figure S6. The corresponding raw data is shown
in Tables S22–S57. Here, it can
be seen that irrespective of the functional and number of explicit
water molecules included in the system, we frequently obtain very
poor correlations between calculated and experimental data, with R2 values as low as 0.2 and never higher than
0.9. In addition, the slopes of the calculated LFER vary widely, with
β values that range from −0.16 to −1.53 (compared
to an experimental value of −0.66). This discrepancy with the
experimental data is again due to the fact that while the transition
states tend to be very similar irrespective of how many water molecules
are included in the system, the reactant states can change quite markedly,
in particular when only two or four water molecules are included in
the system, in which case the water molecules sometimes do not interact
with the sulfate diester but instead with each other, pulling the
nucleophile away from a position suitable for in-line attack on the
diester (see, e.g., Figure ; coordinates of all stationary points are provided in the Supporting Information). Indeed, the best agreement
with experiment is obtained without including explicit water molecules
in the system; then, the β values range from −0.62 to
−0.97 with R2 ranging from −0.58
to −0.85.
Figure 5
Comparison of calculated linear free-energy relationships
for the
alkaline hydrolysis of the aryl sulfate diesters studied in this work
(Figure ), in the
presence of 0 (implicit solvent), 2, 4, or 8 explicit water molecules.
Data was obtained using either the (A) ωB97X-D,[41] (B) M11L,[39] or (C) M062X[40] functionals. The corresponding raw data is presented
in Tables S22–S33. Experimental
data was obtained from ref (30).
Comparison of calculated linear free-energy relationships
for the
alkaline hydrolysis of the aryl sulfate diesters studied in this work
(Figure ), in the
presence of 0 (implicit solvent), 2, 4, or 8 explicit water molecules.
Data was obtained using either the (A) ωB97X-D,[41] (B) M11L,[39] or (C) M062X[40] functionals. The corresponding raw data is presented
in Tables S22–S33. Experimental
data was obtained from ref (30).In terms of partial charges (Figure and Figures S7 and S8),
there are subtle overall differences in the calculated partial charges
across the series, as would be expected from altering the pKa of the leaving group; however, the differences
are small. It appears, in addition, that changing the functional and
introducing explicit water molecules in the system change the absolute
values of the calculated partial charges but have little impact on
calculated trends across the series.
Figure 6
Partial charges on (A) nucleophile oxygen,
(B) sulfur atom, and
(C) leaving group oxygen, at the transition states for the alkaline
hydrolysis of the aryl sulfate diesters studied in this work (Figure ). Partial charges
were calculated using the ωB97X-D[41] functional and the CHELPG charge calculation scheme[44] as described in the Methodology section. The corresponding charge distributions obtained using the
M11L[39] and M062X[40] functionals are shown in Figures S7 and S8, respectively, and the corresponding raw data is shown in Tables S58–S81.
Partial charges on (A) nucleophile oxygen,
(B) sulfur atom, and
(C) leaving group oxygen, at the transition states for the alkaline
hydrolysis of the aryl sulfate diesters studied in this work (Figure ). Partial charges
were calculated using the ωB97X-D[41] functional and the CHELPG charge calculation scheme[44] as described in the Methodology section. The corresponding charge distributions obtained using the
M11L[39] and M062X[40] functionals are shown in Figures S7 and S8, respectively, and the corresponding raw data is shown in Tables S58–S81.Finally, we have examined in detail the transition state geometries
for the different systems, as the calculated KIE shown in Table suggest that despite
the problems of reliably modeling the energetics for these compounds,
the transition state geometries provided by the different functionals
appear to be quite reliable. As can be seen from Figure and Figure S9, in all cases, we obtain dissociative but tight, concerted
transition states, with partial bond cleavage to the leaving group
and minimal bond formation to the incoming nucleophile. Geometric
differences based on leaving group pKa are minimal and appear to primarily impact the S–Onuc bond order/distance. Comparison to other previously modeled compounds[25,31−35] (Figure ) as well
as to experimental data for sulfate monoester hydrolysis suggests
that these transition states are clearly more compact than those obtained
for, for example, the spontaneous hydrolysis of phosphate and sulfate
monoesters[22,34,54] but also those obtained for the alkaline hydrolysis of phosphate
diesters.[31] In fact, the transition states
are most similar to those we have previously obtained for the alkaline
hydrolysis of aryl benezenesulfonates, which we have proposed are
hydrolyzed via a similar mechanistic pathway.[33] This provides validation to prior experimental data,[30] which proposed that the hydrolysis proceeds
through concerted (ANDN) transition states but
did not provide information into the degree of bond formation at the
nucleophile.
Figure 7
Calculated bond orders at the transition states for the
alkaline
hydrolysis of the aryl sulfate diesters studied in this work (Figure ), in the presence
of 0 (implicit solvent), 2, 4, or 8 explicit water molecules. Bond
orders were calculated based on the Wiberg bond index[45] using natural bond orbital (NBO) analysis.[46] Data was obtained using either the (A) M11L,[39] (B) M062X,[40] or (C)
ωB97X-D[41] functionals. Note that
due to data similarity between different systems, it is very difficult
to visualize the data with two explicit water molecules on the overlay
plot; however, the corresponding raw data is presented in Tables S82–S105.
Figure 8
Comparison
of the calculated bond orders at the transition states
for the spontaneous hydrolysis of phosphate monoesters (dark blue),
the reaction of substituted pyridinio-N-phosphonates
with pyridine (red), and the alkaline hydrolysis of phosphate diesters
(light blue), fluorophosphate monoesters (green), arylsulfonate monoesters
(orange), and sulfate diaryl diesters (plum). In the case of the sulfate
diesters, data shown is obtained in the presence of eight explicit
water molecules using the ωB97X-D[41] functional. All other data is from our prior work.[31−35] Note that as the calculations were performed at differing levels
of theory, this comparison is qualitative only. In addition, while
there does not exist explicit computational data for the hydrolysis
of sulfate monoester monoanions, there does exist experimental data,
which suggests a Brønsted coefficient (βlg)
of −1.81 for the hydrolysis of these compounds, compared to
a measured βlg of −1.23 for phosphate monoester
dianions.[22,55] Taking into account the different effective
charges in the substrates,[56] the transition
states for the hydrolysis of sulfate monoester monoanions and phosphate
monoester dianions share a high degree of leaving group bond fission.
This figure is adapted from ref (35), with permission from the Royal Society of Chemistry.
Calculated bond orders at the transition states for the
alkaline
hydrolysis of the aryl sulfate diesters studied in this work (Figure ), in the presence
of 0 (implicit solvent), 2, 4, or 8 explicit water molecules. Bond
orders were calculated based on the Wiberg bond index[45] using natural bond orbital (NBO) analysis.[46] Data was obtained using either the (A) M11L,[39] (B) M062X,[40] or (C)
ωB97X-D[41] functionals. Note that
due to data similarity between different systems, it is very difficult
to visualize the data with two explicit water molecules on the overlay
plot; however, the corresponding raw data is presented in Tables S82–S105.Comparison
of the calculated bond orders at the transition states
for the spontaneous hydrolysis of phosphate monoesters (dark blue),
the reaction of substituted pyridinio-N-phosphonates
with pyridine (red), and the alkaline hydrolysis of phosphate diesters
(light blue), fluorophosphate monoesters (green), arylsulfonate monoesters
(orange), and sulfate diaryl diesters (plum). In the case of the sulfate
diesters, data shown is obtained in the presence of eight explicit
water molecules using the ωB97X-D[41] functional. All other data is from our prior work.[31−35] Note that as the calculations were performed at differing levels
of theory, this comparison is qualitative only. In addition, while
there does not exist explicit computational data for the hydrolysis
of sulfate monoester monoanions, there does exist experimental data,
which suggests a Brønsted coefficient (βlg)
of −1.81 for the hydrolysis of these compounds, compared to
a measured βlg of −1.23 for phosphate monoester
dianions.[22,55] Taking into account the different effective
charges in the substrates,[56] the transition
states for the hydrolysis of sulfate monoester monoanions and phosphate
monoester dianions share a high degree of leaving group bond fission.
This figure is adapted from ref (35), with permission from the Royal Society of Chemistry.
Conclusions
The present work[57] provides a detailed
mechanistic study of the alkaline hydrolysis of diaryl sulfate diesters
using different density functionals as well as both pure implicit
solvation and mixed explicit/implicit solvation with different numbers
of explicit water molecules. From a methodological perspective, our
prior work has focused on using mixed explicit/implicit solvation
to study the attack of a neutral nucleophile (H2O) on charged
electrophiles,[25,34,38] whereas the current study focuses on the attack of a charged nucleophile
(OH–) on neutral sulfate diesters. Prior work has
shown that the introduction of explicit water molecules that introduce
explicit hydrogen bonding interactions was critical when modeling
nucleophilic attack on charged electrophiles. In contrast, in the
present work, we obtain the best agreement with the experimentally
measured LFER for the hydrolysis of these neutral compounds in pure
implicit solvation; furthermore, the introduction of explicit water
molecules does not significantly change the transition states involved
compared to a pure implicit solvent, with stable calculated kinetic
isotope effects irrespective of the number of explicit water molecules
introduced. That is, we demonstrate that the reaction proceeds through
concerted transition states for all compounds, without the involvement
of an intermediate, as suggested by prior experimental data.[30]We note that we have discussed this issue
in great detail in the
context of the hydrolysis of related phosphate and sulfate monoesters[25] and also extensively explored whether an intermediate
is feasible or not in the case of the analogous alkaline hydrolysis
of arylsulfonate monoesters.[33] In the case
of phosphate monoester hydrolysis, multiple mechanisms are theoretically
possible, including stepwise associative (AN+DN) or dissociative (DN+AN) pathways, as well
as concerted ANDN pathways, and thus, it is
necessary to map out a full More O’Ferrall–Jencks plot[36,37] (although this can sometimes be deceptive and lead to the wrong
mechanistic conclusions, as discussed in great detail in ref (25)). In the case of the associative
pathway, when the nucleophile is water, phosphate hydrolysis could
proceed through a substrate-assisted pathway, in which one of the
non-bridging oxygenatoms of the phosphorus atoms deprotonates (and
thus activates) the incoming nucleophile. In the case of sulfate ester
hydrolysis, such a mechanism is a priori not viable due to the much
lower pKa of the non-bridging oxygen atoms
(inorganic sulfate has a first pKa of
−3[58]). This then suggests a single
mechanism for nucleophilic attack, as discussed in refs (25, 33), and the question becomes whether a stable
intermediate is viable or not. In the present case, in all our calculations,
following the IRC from the transition state led directly to a product
state with no evidence of the presence of a stable intermediate, similar
to the analogous case of sulfonate monoester hydrolysis.[33] This provides further support for the hydrolysis
of arylsulfate diesters proceeding through a single, concerted pathway,
with transition states that are dissociative in nature but still more
compact than those of analogous compounds that we have studied (with
the exception of arylsulfonate monoesters, see Figure ).Finally, the calculations provide
information about the degree
of nucleophilic involvement, for which no experimental data are available,
and indicate that the transition states involved are slightly dissociative,
with partial bond formation to the nucleophile and partial bond cleavage
to the leaving group. Although still concerted, these transition states
are nevertheless more compact than any obtained from our previous
studies of related compounds (Figure ) and most greatly resemble those obtained for analogous
aryl sulfonates. Obtaining detailed insights into the nature of the
transition states involved is an important building block to understand
the chemical role of these biologically important molecules in vivo;
however, this work also highlights the significant challenges involved
in reliably modeling these compounds.