Literature DB >> 26641116

Using Hessian Updating To Increase the Efficiency of a Hessian Based Predictor-Corrector Reaction Path Following Method.

H P Hratchian1, H B Schlegel1.   

Abstract

The reaction path is a key concept in the theoretical description of a chemical reaction. The intrinsic reaction coordinate is defined as the steepest descent path in mass-weighted Cartesian coordinates that connects the transition state to reactants and products on the potential energy surface. Recently, a new Hessian based predictor-corrector reaction path following algorithm was presented that is comparable to a fourth-order algorithm developed earlier. Although the method is very accurate, it is costly because second derivatives of the energy are required at each step. In this work, the efficiency of the method is greatly enhanced by employing Hessian updating. Three different updating schemes have been tested:  Murtagh and Sargent, Powell-symmetric Broyden, and Bofill. Bofill's update performs the best and yields excellent speed-up.

Year:  2005        PMID: 26641116     DOI: 10.1021/ct0499783

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  64 in total

1.  From bifunctional to trifunctional (tricomponent nucleophile-transition metal-lewis acid) catalysis: the catalytic, enantioselective α-fluorination of acid chlorides.

Authors:  Jeremy Erb; Daniel H Paull; Travis Dudding; Lee Belding; Thomas Lectka
Journal:  J Am Chem Soc       Date:  2011-04-22       Impact factor: 15.419

2.  Kinetics and mechanistic analysis of an extremely rapid carbon dioxide fixation reaction.

Authors:  Deguang Huang; Olga V Makhlynets; Lay Ling Tan; Sonny C Lee; Elena V Rybak-Akimova; R H Holm
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

3.  Water-assisted peptide bond formation between two double amino acid molecules in the gas phase.

Authors:  Sylwia Freza
Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

4.  A DFT study of hydrogen and methane activation by B(C6F5)3/P(t-Bu)3 and Al(C6F5)3/P(t-Bu)3 frustrated Lewis pairs.

Authors:  Nery Villegas-Escobar; Alejandro Toro-Labbé; Marcos Becerra; Misael Real-Enriquez; Jose R Mora; Luis Rincon
Journal:  J Mol Model       Date:  2017-07-21       Impact factor: 1.810

5.  Does addition of NO2 to carbon-centered radicals yield RONO or RNO2? An investigation using distonic radical ions.

Authors:  Benjamin B Kirk; Adam J Trevitt; Stephen J Blanksby
Journal:  J Am Soc Mass Spectrom       Date:  2013-02-23       Impact factor: 3.109

6.  Theoretical mechanistic study on the reaction of the methoxymethyl radical with nitrogen dioxide.

Authors:  Yulei Guan; Xiangrui Meng; Xia Wang; Ru Liu; Haixia Ma; Jirong Song
Journal:  J Mol Model       Date:  2021-01-07       Impact factor: 1.810

7.  The physico-chemical "anatomy" of the tautomerization through the DPT of the biologically important pairs of hypoxanthine with DNA bases: QM and QTAIM perspectives.

Authors:  Ol'ha O Brovarets'; Roman O Zhurakivsky; Dmytro M Hovorun
Journal:  J Mol Model       Date:  2013-01-05       Impact factor: 1.810

8.  Understanding the thermal [1s,5s] hydrogen shift isomerization of ocimene.

Authors:  Eduardo Chamorro; Pablo Ruiz; Jairo Quijano; Diana Luna; Laura Restrepo; Sandra Zuluaga; Mario Duque-Noreña
Journal:  J Mol Model       Date:  2014-08-06       Impact factor: 1.810

9.  Comparison of Three Chain-of-States Methods: Nudged Elastic Band and Replica Path with Restraints or Constraints.

Authors:  Peng Tao; Milan Hodošček; Joseph D Larkin; Yihan Shao; Bernard R Brooks
Journal:  J Chem Theory Comput       Date:  2012-09-27       Impact factor: 6.006

10.  DPT tautomerization of the long A∙A Watson-Crick base pair formed by the amino and imino tautomers of adenine: combined QM and QTAIM investigation.

Authors:  Ol'ha O Brovarets'; Roman O Zhurakivsky; Dmytro M Hovorun
Journal:  J Mol Model       Date:  2013-05-29       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.