Literature DB >> 32284610

Meltome atlas-thermal proteome stability across the tree of life.

Anna Jarzab1, Nils Kurzawa2,3, Thomas Hopf4, Matthias Moerch5, Jana Zecha1, Niels Leijten6, Yangyang Bian1, Eva Musiol7, Melanie Maschberger4, Gabriele Stoehr4, Isabelle Becher2, Charlotte Daly1, Patroklos Samaras1, Julia Mergner1, Britta Spanier8, Angel Angelov5, Thilo Werner9, Marcus Bantscheff9, Mathias Wilhelm1, Martin Klingenspor7, Simone Lemeer6, Wolfgang Liebl5, Hannes Hahne10, Mikhail M Savitski11, Bernhard Kuster12.   

Abstract

We have used a mass spectrometry-based proteomic approach to compile an atlas of the thermal stability of 48,000 proteins across 13 species ranging from archaea to humans and covering melting temperatures of 30-90 °C. Protein sequence, composition and size affect thermal stability in prokaryotes and eukaryotic proteins show a nonlinear relationship between the degree of disordered protein structure and thermal stability. The data indicate that evolutionary conservation of protein complexes is reflected by similar thermal stability of their proteins, and we show examples in which genomic alterations can affect thermal stability. Proteins of the respiratory chain were found to be very stable in many organisms, and human mitochondria showed close to normal respiration at 46 °C. We also noted cell-type-specific effects that can affect protein stability or the efficacy of drugs. This meltome atlas broadly defines the proteome amenable to thermal profiling in biology and drug discovery and can be explored online at http://meltomeatlas.proteomics.wzw.tum.de:5003/ and http://www.proteomicsdb.org.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32284610     DOI: 10.1038/s41592-020-0801-4

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  39 in total

1.  Thermal proteome profiling monitors ligand interactions with cellular membrane proteins.

Authors:  Friedrich B M Reinhard; Dirk Eberhard; Thilo Werner; Holger Franken; Dorothee Childs; Carola Doce; Maria Fälth Savitski; Wolfgang Huber; Marcus Bantscheff; Mikhail M Savitski; Gerard Drewes
Journal:  Nat Methods       Date:  2015-11-02       Impact factor: 28.547

Review 2.  Cold-adapted enzymes.

Authors:  Khawar Sohail Siddiqui; Ricardo Cavicchioli
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

3.  Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.

Authors:  Pascal Leuenberger; Stefan Ganscha; Abdullah Kahraman; Valentina Cappelletti; Paul J Boersema; Christian von Mering; Manfred Claassen; Paola Picotti
Journal:  Science       Date:  2017-02-24       Impact factor: 47.728

4.  Kinase-controlled phase transition of membraneless organelles in mitosis.

Authors:  Arpan Kumar Rai; Jia-Xuan Chen; Matthias Selbach; Lucas Pelkmans
Journal:  Nature       Date:  2018-07-04       Impact factor: 49.962

5.  Tracking cancer drugs in living cells by thermal profiling of the proteome.

Authors:  Mikhail M Savitski; Friedrich B M Reinhard; Holger Franken; Thilo Werner; Maria Fälth Savitski; Dirk Eberhard; Daniel Martinez Molina; Rozbeh Jafari; Rebecca Bakszt Dovega; Susan Klaeger; Bernhard Kuster; Pär Nordlund; Marcus Bantscheff; Gerard Drewes
Journal:  Science       Date:  2014-10-02       Impact factor: 47.728

6.  Thermal proximity coaggregation for system-wide profiling of protein complex dynamics in cells.

Authors:  Chris Soon Heng Tan; Ka Diam Go; Xavier Bisteau; Lingyun Dai; Chern Han Yong; Nayana Prabhu; Mert Burak Ozturk; Yan Ting Lim; Lekshmy Sreekumar; Johan Lengqvist; Vinay Tergaonkar; Philipp Kaldis; Radoslaw M Sobota; Pär Nordlund
Journal:  Science       Date:  2018-02-08       Impact factor: 47.728

7.  Modulation of Protein-Interaction States through the Cell Cycle.

Authors:  Lingyun Dai; Tianyun Zhao; Xavier Bisteau; Wendi Sun; Nayana Prabhu; Yan Ting Lim; Radoslaw M Sobota; Philipp Kaldis; Pär Nordlund
Journal:  Cell       Date:  2018-04-26       Impact factor: 41.582

8.  Pervasive Protein Thermal Stability Variation during the Cell Cycle.

Authors:  Isabelle Becher; Amparo Andrés-Pons; Natalie Romanov; Frank Stein; Maike Schramm; Florence Baudin; Dominic Helm; Nils Kurzawa; André Mateus; Marie-Therese Mackmull; Athanasios Typas; Christoph W Müller; Peer Bork; Martin Beck; Mikhail M Savitski
Journal:  Cell       Date:  2018-04-26       Impact factor: 41.582

9.  Thermal proteome profiling in bacteria: probing protein state in vivo.

Authors:  André Mateus; Jacob Bobonis; Nils Kurzawa; Frank Stein; Dominic Helm; Johannes Hevler; Athanasios Typas; Mikhail M Savitski
Journal:  Mol Syst Biol       Date:  2018-07-06       Impact factor: 11.429

10.  Mitochondria are physiologically maintained at close to 50 °C.

Authors:  Dominique Chrétien; Paule Bénit; Hyung-Ho Ha; Susanne Keipert; Riyad El-Khoury; Young-Tae Chang; Martin Jastroch; Howard T Jacobs; Pierre Rustin; Malgorzata Rak
Journal:  PLoS Biol       Date:  2018-01-25       Impact factor: 8.029

View more
  34 in total

1.  Collision Cross Sections for Native Proteomics: Challenges and Opportunities.

Authors:  Brandon T Ruotolo
Journal:  J Proteome Res       Date:  2021-11-30       Impact factor: 4.466

2.  Proteome-wide mapping of short-lived proteins in human cells.

Authors:  Jiaming Li; Zhenying Cai; Laura Pontano Vaites; Ning Shen; Dylan C Mitchell; Edward L Huttlin; Joao A Paulo; Brian L Harry; Steven P Gygi
Journal:  Mol Cell       Date:  2021-10-08       Impact factor: 17.970

3.  Temporal and thermal profiling of the Toxoplasma proteome implicates parasite Protein Phosphatase 1 in the regulation of Ca2+-responsive pathways.

Authors:  Alice L Herneisen; Zhu-Hong Li; Alex W Chan; Silvia N J Moreno; Sebastian Lourido
Journal:  Elife       Date:  2022-08-17       Impact factor: 8.713

4.  Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli.

Authors:  Rohan Maddamsetti
Journal:  Genome Biol Evol       Date:  2021-06-08       Impact factor: 3.416

Review 5.  Fundamentals to function: Quantitative and scalable approaches for measuring protein stability.

Authors:  Beatriz Atsavapranee; Catherine D Stark; Fanny Sunden; Samuel Thompson; Polly M Fordyce
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

6.  Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the Stabilitome.

Authors:  Tarick J El-Baba; Shannon A Raab; Rachel P Buckley; Christopher J Brown; Corinne A Lutomski; Lucas W Henderson; Daniel W Woodall; Jiangchuan Shen; Jonathan C Trinidad; Hengyao Niu; Martin F Jarrold; David H Russell; Arthur Laganowsky; David E Clemmer
Journal:  Anal Chem       Date:  2021-06-08       Impact factor: 8.008

7.  A Bayesian semi-parametric model for thermal proteome profiling.

Authors:  Siqi Fang; Paul D W Kirk; Marcus Bantscheff; Kathryn S Lilley; Oliver M Crook
Journal:  Commun Biol       Date:  2021-06-29

8.  The rise of proteome-wide biophysics.

Authors:  Andre Mateus; Mikhail M Savitski; Ilaria Piazza
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429

9.  Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.

Authors:  Diana Mahdessian; Anthony J Cesnik; Christian Gnann; Frida Danielsson; Lovisa Stenström; Muhammad Arif; Cheng Zhang; Trang Le; Fredric Johansson; Rutger Schutten; Anna Bäckström; Ulrika Axelsson; Peter Thul; Nathan H Cho; Oana Carja; Mathias Uhlén; Adil Mardinoglu; Charlotte Stadler; Cecilia Lindskog; Burcu Ayoglu; Manuel D Leonetti; Fredrik Pontén; Devin P Sullivan; Emma Lundberg
Journal:  Nature       Date:  2021-02-24       Impact factor: 69.504

10.  Fever supports CD8+ effector T cell responses by promoting mitochondrial translation.

Authors:  David O'Sullivan; Michal A Stanczak; Matteo Villa; Franziska M Uhl; Mauro Corrado; Ramon I Klein Geltink; David E Sanin; Petya Apostolova; Nisha Rana; Joy Edwards-Hicks; Katarzyna M Grzes; Agnieszka M Kabat; Ryan L Kyle; Mario Fabri; Jonathan D Curtis; Michael D Buck; Annette E Patterson; Annamaria Regina; Cameron S Field; Francesc Baixauli; Daniel J Puleston; Edward J Pearce; Robert Zeiser; Erika L Pearce
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-14       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.