Literature DB >> 16756497

Cold-adapted enzymes.

Khawar Sohail Siddiqui1, Ricardo Cavicchioli.   

Abstract

By far the largest proportion of the Earth's biosphere is comprised of organisms that thrive in cold environments (psychrophiles). Their ability to proliferate in the cold is predicated on a capacity to synthesize cold-adapted enzymes. These enzymes have evolved a range of structural features that confer a high level of flexibility compared to thermostable homologs. High flexibility, particularly around the active site, is translated into low-activation enthalpy, low-substrate affinity, and high specific activity at low temperatures. High flexibility is also accompanied by a trade-off in stability, resulting in heat lability and, in the few cases studied, cold lability. This review addresses the structure, function, and stability of cold-adapted enzymes, highlighting the challenges for immediate and future consideration. Because of the unique properties of cold-adapted enzymes, they are not only an important focus in extremophile biology, but also represent a valuable model for fundamental research into protein folding and catalysis.

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Year:  2006        PMID: 16756497     DOI: 10.1146/annurev.biochem.75.103004.142723

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  185 in total

1.  Domains III and I-2{alpha}, at the entrance of the binding cleft, play an important role in cold adaptation of the periplasmic dipeptide-binding protein (DppA) from the deep-sea psychrophilic bacterium Pseudoalteromonas sp. strain SM9913.

Authors:  Wei-Xin Zhang; Bin-Bin Xie; Xiu-Lan Chen; Sheng Dong; Xi-Ying Zhang; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  Appl Environ Microbiol       Date:  2010-05-07       Impact factor: 4.792

2.  Identification of cold-inducible inner membrane proteins of the psychrotrophic bacterium, Shewanella livingstonensis Ac10, by proteomic analysis.

Authors:  Jungha Park; Jun Kawamoto; Nobuyoshi Esaki; Tatsuo Kurihara
Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

3.  Cold-adapted digestive aspartic protease of the clawed lobsters Homarus americanus and Homarus gammarus: biochemical characterization.

Authors:  Liliana Rojo; Fernando García-Carreño; Maria de Los Angeles Navarrete del Toro
Journal:  Mar Biotechnol (NY)       Date:  2012-05-31       Impact factor: 3.619

4.  Structural prediction of a novel chitinase from the psychrophilic Glaciozyma antarctica PI12 and an analysis of its structural properties and function.

Authors:  Aizi Nor Mazila Ramli; Nor Muhammad Mahadi; Mohd Shahir Shamsir; Amir Rabu; Kwee Hong Joyce-Tan; Abdul Munir Abdul Murad; Rosli Md Illias
Journal:  J Comput Aided Mol Des       Date:  2012-06-19       Impact factor: 3.686

Review 5.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

Authors:  Kamlesh Madhusudan Makwana; Radhakrishnan Mahalakshmi
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

Review 6.  Life at low temperatures: is disorder the driving force?

Authors:  Georges Feller
Journal:  Extremophiles       Date:  2006-12-08       Impact factor: 2.395

7.  Characterization of a cold-adapted DNA photolyase from C. psychrerythraea 34H.

Authors:  Sudipto Munshi; Ananthi Rajamoorthi; Robert J Stanley
Journal:  Extremophiles       Date:  2017-07-19       Impact factor: 2.395

8.  Meltome atlas-thermal proteome stability across the tree of life.

Authors:  Anna Jarzab; Nils Kurzawa; Thomas Hopf; Matthias Moerch; Jana Zecha; Niels Leijten; Yangyang Bian; Eva Musiol; Melanie Maschberger; Gabriele Stoehr; Isabelle Becher; Charlotte Daly; Patroklos Samaras; Julia Mergner; Britta Spanier; Angel Angelov; Thilo Werner; Marcus Bantscheff; Mathias Wilhelm; Martin Klingenspor; Simone Lemeer; Wolfgang Liebl; Hannes Hahne; Mikhail M Savitski; Bernhard Kuster
Journal:  Nat Methods       Date:  2020-04-13       Impact factor: 28.547

9.  Is cold the new hot? Elevated ubiquitin-conjugated protein levels in tissues of Antarctic fish as evidence for cold-denaturation of proteins in vivo.

Authors:  Anne E Todgham; Elizabeth A Hoaglund; Gretchen E Hofmann
Journal:  J Comp Physiol B       Date:  2007-08-21       Impact factor: 2.200

10.  Biochemical and structural characterization of a novel cold-active esterase-like protein from the psychrophilic yeast Glaciozyma antarctica.

Authors:  Noor Haza Fazlin Hashim; Nor Muhammad Mahadi; Rosli Md Illias; Shevin Rizal Feroz; Farah Diba Abu Bakar; Abdul Munir Abdul Murad
Journal:  Extremophiles       Date:  2018-03-20       Impact factor: 2.395

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