Literature DB >> 32251579

Access to Faster Eukaryotic Cell Labeling with Encoded Tetrazine Amino Acids.

Hyo Sang Jang1, Subhashis Jana1, Robert J Blizzard1, Joseph C Meeuwsen1, Ryan A Mehl1.   

Abstract

Labeling of biomolecules in live eukaryotic cells has been limited by low component stability and slow reaction rates. We show that genetically encoded tetrazine amino acids in proteins reach reaction rates of 8 × 104 M-1 s-1 with sTCO reagents, making them the fastest site-specific bioorthogonal labels in eukaryotic systems. We demonstrate that tetrazine amino acids are stable on proteins and are capable of quantitative labeling with sTCO reagents. The exceptionally high reaction rate of this ligation minimizes label concentration, allowing for substoichiometric in vivo eukaryotic protein labeling where the concentration of the label is less than the concentration of the protein. This approach offers unprecedented control over the composition and stability of the protein tag. We anticipate that this system will have a broad impact on labeling and imaging studies because it can be used where all generally orthogonal PylRS/tRNA pairs are employed.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32251579      PMCID: PMC7771912          DOI: 10.1021/jacs.9b11520

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Genetically encoded tetrazine amino acid directs rapid site-specific in vivo bioorthogonal ligation with trans-cyclooctenes.

Authors:  Jason L Seitchik; Jennifer C Peeler; Michael T Taylor; Melissa L Blackman; Timothy W Rhoads; Richard B Cooley; Christian Refakis; Joseph M Fox; Ryan A Mehl
Journal:  J Am Chem Soc       Date:  2012-02-01       Impact factor: 15.419

2.  Bioorthogonal Click Chemistry Enables Site-specific Fluorescence Labeling of Functional NMDA Receptors for Super-Resolution Imaging.

Authors:  Franziska Neubert; Gerti Beliu; Ulrich Terpitz; Christian Werner; Christian Geis; Markus Sauer; Sören Doose
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-15       Impact factor: 15.336

3.  Bioorthogonal Cycloadditions: Computational Analysis with the Distortion/Interaction Model and Predictions of Reactivities.

Authors:  Fang Liu; Yong Liang; K N Houk
Journal:  Acc Chem Res       Date:  2017-09-06       Impact factor: 22.384

4.  Metal-catalyzed one-pot synthesis of tetrazines directly from aliphatic nitriles and hydrazine.

Authors:  Jun Yang; Mark R Karver; Weilong Li; Swagat Sahu; Neal K Devaraj
Journal:  Angew Chem Int Ed Engl       Date:  2012-04-18       Impact factor: 15.336

5.  Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase.

Authors:  Tatsuo Yanagisawa; Ryohei Ishii; Ryuya Fukunaga; Takatsugu Kobayashi; Kensaku Sakamoto; Shigeyuki Yokoyama
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

6.  Ideal Bioorthogonal Reactions Using A Site-Specifically Encoded Tetrazine Amino Acid.

Authors:  Robert J Blizzard; Dakota R Backus; Wes Brown; Christopher G Bazewicz; Yi Li; Ryan A Mehl
Journal:  J Am Chem Soc       Date:  2015-08-10       Impact factor: 15.419

Review 7.  Playing with the Molecules of Life.

Authors:  Douglas D Young; Peter G Schultz
Journal:  ACS Chem Biol       Date:  2018-03-02       Impact factor: 5.100

8.  Systematic Evaluation of Bioorthogonal Reactions in Live Cells with Clickable HaloTag Ligands: Implications for Intracellular Imaging.

Authors:  Heather E Murrey; Joshua C Judkins; Christopher W Am Ende; T Eric Ballard; Yinzhi Fang; Keith Riccardi; Li Di; Edward R Guilmette; Joel W Schwartz; Joseph M Fox; Douglas S Johnson
Journal:  J Am Chem Soc       Date:  2015-08-31       Impact factor: 15.419

9.  Debugging Eukaryotic Genetic Code Expansion for Site-Specific Click-PAINT Super-Resolution Microscopy.

Authors:  Ivana Nikić; Gemma Estrada Girona; Jun Hee Kang; Giulia Paci; Sofya Mikhaleva; Christine Koehler; Nataliia V Shymanska; Camilla Ventura Santos; Daniel Spitz; Edward A Lemke
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-02       Impact factor: 15.336

10.  A conformational sensor based on genetic code expansion reveals an autocatalytic component in EGFR activation.

Authors:  Martin Baumdick; Márton Gelléri; Chayasith Uttamapinant; Václav Beránek; Jason W Chin; Philippe I H Bastiaens
Journal:  Nat Commun       Date:  2018-09-21       Impact factor: 14.919

View more
  11 in total

1.  Bioorthogonal chemistry.

Authors:  Samuel L Scinto; Didier A Bilodeau; Robert Hincapie; Wankyu Lee; Sean S Nguyen; Minghao Xu; Christopher W Am Ende; M G Finn; Kathrin Lang; Qing Lin; John Paul Pezacki; Jennifer A Prescher; Marc S Robillard; Joseph M Fox
Journal:  Nat Rev Methods Primers       Date:  2021-04-15

2.  Catalytic Activation of Bioorthogonal Chemistry with Light (CABL) Enables Rapid, Spatiotemporally Controlled Labeling and No-Wash, Subcellular 3D-Patterning in Live Cells Using Long Wavelength Light.

Authors:  Andrew Jemas; Yixin Xie; Jessica E Pigga; Jeffrey L Caplan; Christopher W Am Ende; Joseph M Fox
Journal:  J Am Chem Soc       Date:  2022-01-24       Impact factor: 16.383

3.  Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.

Authors:  Riley M Bednar; Subhashis Jana; Sahiti Kuppa; Rachel Franklin; Joseph Beckman; Edwin Antony; Richard B Cooley; Ryan A Mehl
Journal:  ACS Chem Biol       Date:  2021-09-30       Impact factor: 4.634

4.  Uncovering the Key Role of Distortion in Bioorthogonal Tetrazine Tools That Defy the Reactivity/Stability Trade-Off.

Authors:  Dennis Svatunek; Martin Wilkovitsch; Lea Hartmann; K N Houk; Hannes Mikula
Journal:  J Am Chem Soc       Date:  2022-05-02       Impact factor: 16.383

5.  Comparison of Bioorthogonal β-Lactone Activity-Based Probes for Selective Labeling of Penicillin-Binding Proteins.

Authors:  Nathaniel W Brown; Joshua D Shirley; Andrew P Marshall; Erin E Carlson
Journal:  Chembiochem       Date:  2020-11-16       Impact factor: 3.164

6.  Synthesis and Evaluation of Novel Ring-Strained Noncanonical Amino Acids for Residue-Specific Bioorthogonal Reactions in Living Cells.

Authors:  Christopher D Reinkemeier; Christine Koehler; Paul F Sauter; Nataliia V Shymanska; Cecile Echalier; Anna Rutkowska; David W Will; Carsten Schultz; Edward A Lemke
Journal:  Chemistry       Date:  2021-03-04       Impact factor: 5.236

7.  Genetic encoding of a highly photostable, long lifetime fluorescent amino acid for imaging in mammalian cells.

Authors:  Chloe M Jones; D Miklos Robkis; Robert J Blizzard; Mika Munari; Yarra Venkatesh; Tiberiu S Mihaila; Alex J Eddins; Ryan A Mehl; William N Zagotta; Sharona E Gordon; E James Petersson
Journal:  Chem Sci       Date:  2021-08-03       Impact factor: 9.969

8.  Nanobody assemblies with fully flexible topology enabled by genetically encoded tetrazine amino acids.

Authors:  Elise M Van Fossen; Riley M Bednar; Subhashis Jana; Rachel Franklin; Joseph Beckman; P Andrew Karplus; Ryan A Mehl
Journal:  Sci Adv       Date:  2022-05-06       Impact factor: 14.957

9.  A Cleavable C2-Symmetric trans-Cyclooctene Enables Fast and Complete Bioorthogonal Disassembly of Molecular Probes.

Authors:  Martin Wilkovitsch; Maximilian Haider; Barbara Sohr; Barbara Herrmann; Jenna Klubnick; Ralph Weissleder; Jonathan C T Carlson; Hannes Mikula
Journal:  J Am Chem Soc       Date:  2020-10-29       Impact factor: 15.419

Review 10.  Expanding the Genetic Code for Neuronal Studies.

Authors:  Ivana Nikić-Spiegel
Journal:  Chembiochem       Date:  2020-07-20       Impact factor: 3.164

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.