Literature DB >> 32240602

Cdk1 Controls Global Epigenetic Landscape in Embryonic Stem Cells.

Wojciech Michowski1, Joel M Chick2, Chen Chu3, Aleksandra Kolodziejczyk3, Yichen Wang4, Jan M Suski3, Brian Abraham5, Lars Anders5, Daniel Day5, Lukas M Dunkl3, Mitchell Li Cheong Man6, Tian Zhang2, Phatthamon Laphanuwat3, Nickolas A Bacon3, Lijun Liu3, Anne Fassl3, Samanta Sharma3, Tobias Otto3, Emanuelle Jecrois3, Richard Han3, Katharine E Sweeney3, Samuele Marro7, Marius Wernig7, Yan Geng3, Alan Moses8, Cheng Li4, Steven P Gygi2, Richard A Young5, Piotr Sicinski9.   

Abstract

The cyclin-dependent kinase 1 (Cdk1) drives cell division. To uncover additional functions of Cdk1, we generated knockin mice expressing an analog-sensitive version of Cdk1 in place of wild-type Cdk1. In our study, we focused on embryonic stem cells (ESCs), because this cell type displays particularly high Cdk1 activity. We found that in ESCs, a large fraction of Cdk1 substrates is localized on chromatin. Cdk1 phosphorylates many proteins involved in epigenetic regulation, including writers and erasers of all major histone marks. Consistent with these findings, inhibition of Cdk1 altered histone-modification status of ESCs. High levels of Cdk1 in ESCs phosphorylate and partially inactivate Dot1l, the H3K79 methyltransferase responsible for placing activating marks on gene bodies. Decrease of Cdk1 activity during ESC differentiation de-represses Dot1l, thereby allowing coordinated expression of differentiation genes. These analyses indicate that Cdk1 functions to maintain the epigenetic identity of ESCs.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  analog sensitive kinase; cell cycle; cyclin; cyclin dependent kinase; differentiation; embryonic stem cells; epigenetics; phosphoproteomics

Mesh:

Substances:

Year:  2020        PMID: 32240602      PMCID: PMC7214218          DOI: 10.1016/j.molcel.2020.03.010

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  97 in total

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Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

Review 2.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

3.  Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry.

Authors:  Joshua E Elias; Steven P Gygi
Journal:  Nat Methods       Date:  2007-03       Impact factor: 28.547

4.  NuMA phosphorylation by CDK1 couples mitotic progression with cortical dynein function.

Authors:  Sachin Kotak; Coralie Busso; Pierre Gönczy
Journal:  EMBO J       Date:  2013-08-06       Impact factor: 11.598

5.  An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

Authors:  J K Eng; A L McCormack; J R Yates
Journal:  J Am Soc Mass Spectrom       Date:  1994-11       Impact factor: 3.109

Review 6.  Mammalian cell-cycle regulation: several Cdks, numerous cyclins and diverse compensatory mechanisms.

Authors:  A Satyanarayana; P Kaldis
Journal:  Oncogene       Date:  2009-06-29       Impact factor: 9.867

7.  Cdk1 coordinates cell-surface growth with the cell cycle.

Authors:  Derek McCusker; Carilee Denison; Scott Anderson; Thea A Egelhofer; John R Yates; Steven P Gygi; Douglas R Kellogg
Journal:  Nat Cell Biol       Date:  2007-04-08       Impact factor: 28.824

8.  REVIGO summarizes and visualizes long lists of gene ontology terms.

Authors:  Fran Supek; Matko Bošnjak; Nives Škunca; Tomislav Šmuc
Journal:  PLoS One       Date:  2011-07-18       Impact factor: 3.240

9.  CDK1-PDK1-PI3K/Akt signaling pathway regulates embryonic and induced pluripotency.

Authors:  Xiao Qi Wang; Chung Mau Lo; Lin Chen; Elly S-W Ngan; Aimin Xu; Randy Yc Poon
Journal:  Cell Death Differ       Date:  2016-09-16       Impact factor: 15.828

10.  Ensembl 2018.

Authors:  Daniel R Zerbino; Premanand Achuthan; Wasiu Akanni; M Ridwan Amode; Daniel Barrell; Jyothish Bhai; Konstantinos Billis; Carla Cummins; Astrid Gall; Carlos García Girón; Laurent Gil; Leo Gordon; Leanne Haggerty; Erin Haskell; Thibaut Hourlier; Osagie G Izuogu; Sophie H Janacek; Thomas Juettemann; Jimmy Kiang To; Matthew R Laird; Ilias Lavidas; Zhicheng Liu; Jane E Loveland; Thomas Maurel; William McLaren; Benjamin Moore; Jonathan Mudge; Daniel N Murphy; Victoria Newman; Michael Nuhn; Denye Ogeh; Chuang Kee Ong; Anne Parker; Mateus Patricio; Harpreet Singh Riat; Helen Schuilenburg; Dan Sheppard; Helen Sparrow; Kieron Taylor; Anja Thormann; Alessandro Vullo; Brandon Walts; Amonida Zadissa; Adam Frankish; Sarah E Hunt; Myrto Kostadima; Nicholas Langridge; Fergal J Martin; Matthieu Muffato; Emily Perry; Magali Ruffier; Dan M Staines; Stephen J Trevanion; Bronwen L Aken; Fiona Cunningham; Andrew Yates; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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  19 in total

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Authors:  Adrijana Crncec; Helfrid Hochegger
Journal:  Methods Mol Biol       Date:  2022

2.  Future Prospects for Epigenetics in Autism Spectrum Disorder.

Authors:  Logan A Williams; Janine M LaSalle
Journal:  Mol Diagn Ther       Date:  2022-08-13       Impact factor: 4.476

3.  CDC7-independent G1/S transition revealed by targeted protein degradation.

Authors:  Jan M Suski; Nalin Ratnayeke; Marcin Braun; Tian Zhang; Vladislav Strmiska; Wojciech Michowski; Geylani Can; Antoine Simoneau; Konrad Snioch; Mikolaj Cup; Caitlin M Sullivan; Xiaoji Wu; Joanna Nowacka; Timothy B Branigan; Lindsey R Pack; James A DeCaprio; Yan Geng; Lee Zou; Steven P Gygi; Johannes C Walter; Tobias Meyer; Piotr Sicinski
Journal:  Nature       Date:  2022-05-04       Impact factor: 69.504

4.  Quantitative proteomics analysis to assess protein expression levels in the ovaries of pubescent goats.

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Review 5.  G1-phase progression in pluripotent stem cells.

Authors:  Menno Ter Huurne; Hendrik G Stunnenberg
Journal:  Cell Mol Life Sci       Date:  2021-04-21       Impact factor: 9.261

Review 6.  Cyclin E in normal physiology and disease states.

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Journal:  Trends Cell Biol       Date:  2021-05-27       Impact factor: 21.167

7.  MMB-FOXM1-driven premature mitosis is required for CHK1 inhibitor sensitivity.

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Journal:  Cell Rep       Date:  2021-03-02       Impact factor: 9.423

8.  In vitro studies of H520 cell cycle and apoptosis by anlotinib combined with radiotherapy.

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Review 9.  Intricate Regulatory Mechanisms of the Anaphase-Promoting Complex/Cyclosome and Its Role in Chromatin Regulation.

Authors:  Tatyana Bodrug; Kaeli A Welsh; Megan Hinkle; Michael J Emanuele; Nicholas G Brown
Journal:  Front Cell Dev Biol       Date:  2021-05-24

10.  Three-dimensional geometry controls division symmetry in stem cell colonies.

Authors:  Agathe Chaigne; Matthew B Smith; Rocio Lopez Cavestany; Edouard Hannezo; Kevin J Chalut; Ewa K Paluch
Journal:  J Cell Sci       Date:  2021-07-29       Impact factor: 5.285

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