| Literature DB >> 32231423 |
Abstract
BACKGROUND: BRIP1 is a helicase that partners with BRCA1 in the homologous recombination (HR) step in the repair of DNA inter-strand cross-link lesions. It is a rare cause of hereditary ovarian cancer in patients with no mutations of BRCA1 or BRCA2. The role of the protein in other cancers such as gastrointestinal (GI) carcinomas is less well characterized but given its role in DNA repair it could be a candidate tumor suppressor similarly to the two BRCA proteins. AIM: To analyze the role of helicase BRIP1 (FANCJ) in GI cancers pathogenesis.Entities:
Keywords: BRIP1; BACH1; Copy number alterations; FANCJ; Gastrointestinal cancers; Mutations
Mesh:
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Year: 2020 PMID: 32231423 PMCID: PMC7093310 DOI: 10.3748/wjg.v26.i11.1197
Source DB: PubMed Journal: World J Gastroenterol ISSN: 1007-9327 Impact factor: 5.742
Figure 1Number of mutations in each exon of BRIP1. The total number of mutations in the five gastrointestinal adenocarcinomas examined were 38 in 30 samples.
Likely oncogenic BRIP1 mutations in gastrointestinal cancers according to the OncoKB database
| TCGA-A6-3807-01 | Colon adenocarcinoma | S1117* | Nonsense_muta-tion | Diploid | 0.21 | 90 | 20 |
| TCGA-DT-5265-01 | Rectal adenocarcinoma | Q227* | Nonsense_muta-tion | Shallow del | 0.59 | 81 | 7 |
| TCGA-AA-3496-01 | Colon adenocarcinoma | I504Nfs*7 | Frame_Shift_Ins | Gain | 0.43 | 145 | 11 |
| TCGA-AZ-4315-01 | Colon adenocarcinoma | E357* | Nonsense_muta-tion | Diploid | 0.32 | 6317 | 8 |
| TCGA-L5-A4OE-01 | Esophageal adenocarcinoma | Q126* | Nonsense_muta-tion | Gain | 0.35 | 267 | 4 |
| TCGA-CG-5721-01 | Gastric adenocarcinoma | I504Sfs*22 | Frame_Shift_Del | Diploid | 0.22 | 3725 | 11 |
The column “Number of mutations” presents the total number of mutations in the respective sample. Ins: Insertion; Del: Deletion.
Figure 2Percentage of BRIP1 mutations in the five gastrointestinal adenocarcinomas.
Figure 3Mutation frequency of MSI and POLE/POLD1 genes in gastrointestinal cancers with BRIP1 abnormalities (altered group) and without BRIP1 abnormalities (unaltered group). Comparison of the altered and unaltered group is statistically significant for all six genes.
Figure 4Percentage of BRIP1 amplifications in the five gastrointestinal adenocarcinomas.
Figure 5Comparison of overall survival in gastric cancer patients with higher (above the median) and lower (below the median) BRIP1 mRNA expression. Higher BRIP1 mRNA expression was associated with improved overall survival compared with lower BRIP1 mRNA expression in gastric cancer.