| Literature DB >> 32225050 |
Maria Harizani1, Eleni Katsini1, Panagiota Georgantea1, Vassilios Roussis1, Efstathia Ioannou1.
Abstract
From the organic extracts of five bacterial strains isolated from marine sediments collected in the East Mediterranean Sea, three new (15, 16, 31) and twenty-nine previously reported (1-14, 17-30, 32) metabolites bearing the 2,5-diketopiperazine skeleton were isolated. The structures of the chlorinated compounds 15, 16, and 31 were elucidated by extensive analysis of their spectroscopic data (NMR, MS, UV, IR). Compounds 15 and 16 were evaluated for their antifungal activity against Candida albicans and Aspergillus niger but were proven inactive. The relevant literature is supplemented with complete NMR assignments and revisions for the 29 previously reported compounds.Entities:
Keywords: 2,5-diketopiperazine; antifungal activity evaluation; marine bacteria; natural products; sediment; structure elucidation
Mesh:
Substances:
Year: 2020 PMID: 32225050 PMCID: PMC7181205 DOI: 10.3390/molecules25071509
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Chemical structures of compounds 1–17 isolated from various marine-derived bacterial strains.
Figure 2Chemical structures of compounds 18–32 isolated from various marine-derived bacterial strains.
Figure 3COSY (bold bonds) and important HMBC (arrows) correlations observed for compounds 15/16 and 31.
(a)
| Position | 1 2 | 2 2 | 3 2 | 4 2 | 5 2 | 6 2 | 7 2 | 8 2 |
|---|---|---|---|---|---|---|---|---|
| 1 | - | - | - | - | - | - | - | - |
| 3 | 4.08, d (16.6) | 4.12, m | 3.92, br s | 4.00, dd (9.7, 3.6) | 3.91, ddd (9.7, 5.5, 4.4) | 4.04, dd (9.6, 3.8) | 3.95, m | 3.95, br s |
| 4 | 6.32, br s | 5.66, br s | 5.67, br s | 5.78, br s | 6.04, br s | 5.83, br s | 6.07, br s | 5.86, br s |
| 6 | 4.07, m | 4.11, m | 4.07, t (8.1) | 4.10, t (8.2) | 4.07, dd (9.4, 6.8) | 4.48, dd (11.1, 6.3) | 4.16, dd (9.2, 5.6) | 4.05, br t (8.0) |
| 7 | 2.36, m | 2.36, m | 2.37, m | 2.33, m | 2.38, m | 2.37, br dd (13.5, 6.3) | 2.48, m | 2.36, m |
| 2.05, m | 2.13, m | 2.02, m | 2.12, m | 2.02, m | 2.14, ddd (13.5, 11.1, 4.3) | 2.02, m | ||
| 8 | 2.00, m | 2.01, m | 2.02, m | 2.01, m | 2.02, m | 4.58 (t, 4.3) | 4.46, m | 2.02, m |
| 1.90, m | 1.89, m | 1.89, m | 1.89, m | 1.88, m | 1.89, m | |||
| 9 | 3.61, m | 3.56, m | 3.62, m | 3.55, m | 3.63, m | 3.71, dd (13.2, 4.3) | 3.95, m | 3.61, m |
| 10 | 1.45, d (7.0) | 2.62, qqd (7.3, 6.9, 2.7) | 2.05, m | 1.62, m | 2.05, ddd (14.5, 9.9, 3.8) | 1.62, m | 2.30, m | |
| 11 | 0.89, d (6.9) | 1.71, m | 1.75, m | 1.73, m | 1.74, m | 1.41, m | ||
| 12 | 1.04, d (7.3) | 0.94, d (6.5) | 0.93, d (6.5) | 0.94, d (6.6) | 0.93, d (6.5) | 0.91, t (7.4) | ||
| 13 | 0.98, d (6.5) | 0.97, d (6.5) | 0.99, d (6.6) | 0.96, d (6.5) | 1.03, d (7.2) | |||
| 14 | ||||||||
| 15 | ||||||||
| 16 | ||||||||
| 17 | ||||||||
| 18 | ||||||||
| 19 | ||||||||
| 20 | ||||||||
| OH |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Recorded at 400 MHz. 3 Recorded at 950 MHz. 4 Recorded at 700 MHz. 5 Recorded at 600 MHz.
(b)
| Position | 9 2 | 10 2 | 11 2 | 12 2 | 13 2 | 14 2 | 15 3 | 16 3 |
|---|---|---|---|---|---|---|---|---|
| 1 | - | - | - | - | - | - | - | - |
| 3 | 3.77, dd (5.4, 3.9) | 4.19, m | 4.25, dd (10.5, 3.5) | 4.19, dt (6.7, 4.3) | 4.30, dd (10.8, 3.6) | 4.20, dd (10.1, 3.5) | 4.21, td (10.0, 3.3) | 4.13, ddd (7.0, 4.2, 3.5) |
| 4 | 6.19, br s | 7.43, s | 5.69, br s | 5.76, br s | 5.57, br s | 5.85, br s | 5.55, br s | 5.75, br s |
| 6 | 4.08, dd (9.6, 6.5) | 4.10, m | 4.05, t (8.0) | 3.04, dd (10.4, 6.6) | 4.45, dd (11.2, 6.4) | 4.07, t (7.9) | 4.07, m | 3.22, dd (10.8, 6.6) |
| 7 | 2.39, m | 2.36, m | 2.31,m | 2.19, m | 2.35, dd (13.5, 6.4) | 2.32, m | 2.33, m | 2.25, dt (12.0, 6.6) |
| 8 | 2.01, m | 2.02, m | 2.02, m | 1.94, m | 4.59, t (4.3) | 2.07, m | 2.00, m | 1.96, m |
| 9 | 3.68, m | 3.55, m | 3.62, m | 3.62, ddd (12.0, 9.4, 8.4) | 3.78, dd (13.4, 4.3) | 3.63, m | 3.62, dt (11.5, 8.0) | 3.64, dt (11.9, 8.4) |
| 10 | 1.93, m | 2.50, m 2.36, m | 3.62, m | 3.08, m | 3.62, dd (14.5, 3.6) | 3.46, dd (14.6, 3.5) | 3.48, dd (14.8, 3.3) | 3.01, dd (14.0, 7.0) |
| 11 | 1.54, m | 3.02, m | - | - | - | - | - | - |
| 12 | 0.91, t (7.4) | 2.59, s | 7.20, br d (7.2) | 7.19, br d (7.2) | 7.21, br d (7.4) | 7.03, d (8.6) | 7.18, d (2.0) | 7.17, d (2.0) |
| 13 | 1.00, d (6.9) | 7.33, br t (7.2) | 7.30, br t (7.2) | 7.34, br t (7.4) | 6.76, d (8.6) | - | - | |
| 14 | 7.28, br t (7.2) | 7.28, br t (7.2) | 7.29, br t (7.4) | - | - | - | ||
| 15 | 7.33, br t (7.2) | 7.30, br t (7.2) | 7.34, br t (7.4) | 6.76, d (8.6) | 6.98, d (8.2) | 6.95, d (8.3) | ||
| 16 | 7.20, br d (7.2) | 7.19, br d (7.2) | 7.21, br d (7.4) | 7.03, d (8.6) | 7.03, dd (8.2, 2.0) | 7.00, dd (8.3, 2.0) | ||
| 17 | ||||||||
| 18 | ||||||||
| 19 | ||||||||
| 20 | ||||||||
| OH | 6.69, br s | 5.55, br s | 5.53, br s |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Recorded at 400 MHz. 3 Recorded at 950 MHz. 4 Recorded at 700 MHz. 5 Recorded at 600 MHz.
(c)
| Position | 17 2 | 18 4 | 19 2 | 20 5 | 21 2 | 22 5 | 23 2 | 24 5 |
|---|---|---|---|---|---|---|---|---|
| 1 | - | 5.92, br s | 5.92, br s | 5.88, br s | 6.27, br s | 6.13, br s | 5.97, br s | 5.73, br s |
| 3 | 4.36, dd (10.9, 3.0) | 4.02, d (17.4) | 4.09, q (7.0) | 4.11, q (7.0) | 3.89, br s | 3.97, br d (9.9) | 3.94, br s | 4.00, q (7.0) |
| 4 | 5.72, br s | 5.76, br s | 5.89, br s | 5.83, br s | 6.10, br s | 6.13, br s | 5.84, br s | 5.79, br s |
| 6 | 4.06, t (8.0) | 3.97, m | 3.99, m | 3.95, br s | 4.00, br d (10.1) | 3.97, br d (9.9) | 4.00, br d (10.2) | 4.26, br d (8.2) |
| 7 | 2.31, m | 1.82, ddd (13.3, 9.6, 4.3) | 1.89, ddd (13.9, 9.5, 3.8) | 2.12, m | 1.88, ddd (13.7, 9.8, 3.7) | 1.85, ddd (13.4, 9.6, 3.7) | 1.89, ddd (13.6, 9.9, 3.7) | 3.31, dd (14.0, 3.6) |
| 8 | 2.00, m | 1.76, m | 1.75, m | 1.46, m | 1.76, m | 1.76, m | 1.76, m | - |
| 9 | 3.60, m | 0.94, d (6.4) | 0.94, d (6.5) | 0.93, t (7.5) | 0.93, d (6.9) | 0.93, d (6.4) | 0.93, d (6.7) | 7.21, br d (7.6) |
| 10 | 3.75, dd (15.1, 3.6) | 0.99, d (6.4) | 0.98, d (6.5) | 1.01, d (7.3) | 0.97, d (6.5) | 0.98, d (6.4) | 0.98, d (6.5) | 7.32, br t (7.6) |
| 11 | - | 1.50, d (7.0) | 1.50, d (7.0) | 2.41, qqd (7.0, 6.9, 3.4) | 1.85, ddd (13.4, 9.6, 3.7) | 2.10, m | 7.28, br t (7.6) | |
| 12 | 7.10, br s | 0.93, d (6.9) | 1.76, m | 1.45, m | 7.32, br t (7.6) | |||
| 13 | 8.20, br s | 1.03, d (7.0) | 0.93, d (6.4) | 0.92, t (7.5) | 7.21, br d (7.6) | |||
| 14 | - | 0.98, d (6.4) | 1.01, d (7.1) | 1.14, d (7.0) | ||||
| 15 | 7.38, br d (8.0) | |||||||
| 16 | 7.22, br t (8.0) | |||||||
| 17 | 7.13, br t (8.0) | |||||||
| 18 | 7.57, br d (8.0) | |||||||
| 19 | - | |||||||
| 20 | ||||||||
| OH |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Recorded at 400 MHz. 3 Recorded at 950 MHz. 4 Recorded at 700 MHz. 5 Recorded at 600 MHz.
(d)
| Position | 25 3 | 26 2 | 27 2 | 28 5 | 29 2 | 30 4 | 31 4 | 32 5 |
|---|---|---|---|---|---|---|---|---|
| 1 | 5.94, br s | 6.10, br s | 5.79, br s | 5.78, br s | - | 5.65, br s | 5.65, br s | 5.79, br s |
| 3 | 4.03, dd (5.2, 4.6) | 3.87, br s | 3.86, br d (10.2) | 3.91, br s | 3.65, dd (10.0, 4.3) | 3.90, br s | 3.90, br s | 4.13, br d (8.5) |
| 4 | 5.71, br s | 5.89, br s | 5.90, br s | 5.90, br s | - | 5.73, br s | 5.73, br s | 5.79, br s |
| 6 | 4.25, dd (8.9, 3.6) | 4.22, br d (9.7) | 4.26, dd (7.9, 3.9) | 4.22, br d (9.6) | 4.23, dd (4.6, 3.6) | 4.15, br d (9.4) | 4.19, br d (8.9) | 4.13, br d (8.5) |
| 7 | 3.35, dd (14.0, 3.6) | 3.44, dd (13.8, 3.5) | 3.23, dd (13.8, 3.9) | 3.42, dd (13.8, 3.5) | 3.20, dd (13.8, 3.6) | 3.32, dd (14.0, 3.2) | 3.24, dd (14.0, 3.2) | 3.08, dd (13.8, 3.0 |
| 3.02, dd (14.0, 8.9) | 2.87, dd (13.8, 9.7) | 3.05, dd (13.8, 7.9) | 2.89,dd (13.8, 9.6) | 2.82, dd (13.8, 4.6) | 2.83, dd (14.0, 9.4) | 2.89, dd (14.0, 8.9) | )2.30, dd (13.8, 8.5) | |
| 8 | - | - | - | - | - | - | - | - |
| 9 | 7.20, br d (7.4) | 7.20, br d (7.1) | 7.20, br d (7.3) | 7.20, br d (7.1) | 6.99, d (8.5) | 7.07, d (8.4) | 7.17, br s | 7.11, br d (7.2) |
| 10 | 7.34, br t (7.4) | 7.33, br t (7.1) | 7.33, br t (7.3) | 7.33, br t (7.1) | 6.71, d (8.5) | 6.79, d (8.4) | - | 7.34, br t (7.2) |
| 11 | 7.29, br t (7.4) | 7.27, br t (7.1) | 7.28, br t (7.3) | 7.28, br t (7.1) | - | - | - | 7.28, br t (7.2) |
| 12 | 7.34, br t (7.4) | 7.33, br t (7.1) | 7.33, br t (7.3) | 7.33, br t (7.1) | 6.71, d (8.5) | 6.79, d (8.4) | 6.97, d (8.3) | 7.34, br t (7.2) |
| 13 | 7.20, br d (7.4) | 7.20, br d (7.1) | 7.20, br d (7.3) | 7.20, br d (7.1) | 6.99, d (8.5) | 7.07, d (8.4) | 7.02, br d (8.3) | 7.11, br d (7.2) |
| 14 | 3.65, dd (11.0, 4.6) | 2.32, qqd (7.0, 7.0, 3.2) | 1.57, m | 2.00, m | 0.89, m | 1.99, m | 1.99, m | 3.08, dd (13.8, 3.0) |
| 15 | 0.80, d (7.0) | 1.49, m | 1.26, m | 1.44, m | 1.19, m | 1.30, m | - | |
| 16 | 0.99, d (7.0) | 0.84, d (6.8) | 0.87,t (7.4) | 0.73, d (6.7) | 0.85, t (7.5) | 0.87, t (7.4) | 7.11, br d (7.2) | |
| 17 | 0.85, d (6.8) | 0.96, d (7.1) | 0.75, d (6.7) | 0.94, d (7.2) | 0.96, d (7.2) | 7.34, br t (7.2) | ||
| 18 | 7.28, br t (7.2) | |||||||
| 19 | 7.34, br t (7.2) | |||||||
| 20 | 7.11, br d (7.2) | |||||||
| OH |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Recorded at 400 MHz. 3 Recorded at 950 MHz. 4 Recorded at 700 MHz. 5 Recorded at 600 MHz.
(a)
| Position | 1 2 | 2 2 | 3 3,4 | 4 4 | 5 2 | 6 3,4 | 7 2 | 8 3,4 | 9 2 | 10 2 | 11 3,4 | 12 2 | 13 2 | 14 4 | 15 3,5 | 16 3,5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 163.3 | 166.2 | 165.7 | 166.1 | 166.4 | 167.4 | 167.7 | 165.1 | 165.3 | 165.2 | 165.0 | 164.8 | 166.2 | 165.3 | 164.7 | 164.4 |
| 3 | 46.7 | 51.3 | 60.4 | 53.4 | 56.4 | 53.4 | 56.1 | 60.6 | 63.0 | 54.1 | 56.2 | 59.0 | 56.2 | 56.3 | 55.8 | 58.9 |
| 5 | 169.5 | 170.0 | 170.1 | 170.2 | 169.6 | 170.0 | 169.8 | 169.9 | 169.4 | 170.2 | 169.4 | 169.3 | 169.8 | 169.7 | 169.1 | 168.4 |
| 6 | 58.5 | 59.4 | 58.8 | 59.0 | 58.1 | 57.3 | 56.2 | 58.9 | 58.4 | 59.6 | 59.1 | 57.7 | 57.4 | 59.1 | 59.0 | 57.6 |
| 7 | 28.5 | 28.2 | 28.6 | 28.1 | 29.1 | 37.8 | 36.8 | 28.6 | 29.5 | 28.2 | 28.3 | 28.9 | 37.7 | 28.2 | 28.2 | 28.7 |
| 8 | 22.4 | 22.8 | 22.4 | 23.3 | 23.1 | 68.6 | 68.1 | 22.4 | 22.1 | 22.8 | 22.5 | 21.7 | 68.2 | 22.3 | 22.4 | 21.5 |
| 9 | 45.4 | 45.5 | 45.2 | 45.5 | 45.7 | 54.5 | 54.0 | 45.2 | 45.7 | 45.5 | 45.5 | 45.1 | 54.4 | 45.3 | 45.3 | 45.1 |
| 10 | 16.2 | 28.4 | 38.6 | 42.6 | 38.5 | 42.2 | 35.3 | 39.7 | 23.2 | 36.8 | 40.5 | 36.7 | 35.9 | 35.5 | 39.2 | |
| 11 | 16.1 | 24.7 | 24.5 | 24.9 | 24.6 | 24.1 | 24.6 | 49.4 | 135.9 | 135.3 | 135.8 | 126.5 | 128.8 | 128.4 | ||
| 12 | 19.2 | 21.2 | 21.4 | 21.7 | 21.5 | 12.2 | 11.4 | 38.5 | 129.3 | 129.9 | 129.3 | 130.4 | 129.3 | 129.7 | ||
| 13 | 22.7 | 22.3 | 23.6 | 23.0 | 16.0 | 15.4 | 129.1 | 128.8 | 129.2 | 116.0 | 120.2 | 120.0 | ||||
| 14 | 127.6 | 127.3 | 127.6 | 155.9 | 150.6 | 150.8 | ||||||||||
| 15 | 129.1 | 128.8 | 129.2 | 116.0 | 116.7 | 116.3 | ||||||||||
| 16 | 129.3 | 129.9 | 129.3 | 130.4 | 129.0 | 129.5 | ||||||||||
| 17 | ||||||||||||||||
| 18 | ||||||||||||||||
| 19 | ||||||||||||||||
| 20 |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Adapted (and revised when appropriate) as follows: 1 [25], 2 [27], 5 [31], 7 [35], 9 [37], 10 [38], 12 [40], 13 [41], 17 [44], 21 [37], 23 [17], 27 [17], 29 [54]. 3 Determined through HMBC correlations. 4 Recorded at 100 MHz. 5 Recorded at 237.5 MHz. 6 Recorded at 175 MHz. 7 Recorded at 150 MHz. 8 nd: not detected.
(b)
| Position | 17 2 | 18 3,6 | 19 3,4 | 20 3,7 | 21 2 | 22 3,7 | 23 2 | 24 3,7 | 25 3,5 | 26 3,4 | 27 2 | 28 3,7 | 29 2 | 30 3,6 | 31 3,6 | 32 3,7 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 165.7 | 165.3 | nd 8 | nd 8 | 167.4 | nd 8 | 167.3 | nd 8 | nd 8 | nd 8 | 167.6 | nd 8 | 167.6 | 166.1 | 166.2 | nd 8 |
| 3 | 54.7 | 44.6 | 51.1 | 50.6 | 60.3 | 53.0 | 60.1 | 50.7 | 55.8 | 60.4 | 53.4 | 59.8 | 52.8 | 59.9 | 59.9 | 56.1 |
| 5 | 169.5 | 168.1 | nd 8 | nd 8 | 169.0 | nd 8 | 168.8 | nd 8 | nd 8 | nd 8 | 167.8 | nd 8 | 171.4 | nd 8 | nd 8 | nd 8 |
| 6 | 59.3 | 53.2 | 53.7 | 60.0 | 53.2 | 53.0 | 53.2 | 56.2 | 55.8 | 56.5 | 56.4 | 55.9 | 56.3 | 55.8 | 55.9 | 56.1 |
| 7 | 28.4 | 42.3 | 42.7 | 37.7 | 43.9 | 42.7 | 43.6 | 39.8 | 39.8 | 41.0 | 40.2 | 40.2 | 38.1 | 39.3 | 38.9 | 40.1 |
| 8 | 22.7 | 24.0 | 25.2 | 23.6 | 24.3 | 24.3 | 24.1 | 135.3 | 134.9 | 135.4 | 135.1 | 135.6 | 125.7 | 127.3 | 128.2 | 135.3 |
| 9 | 45.5 | 21.0 | 21.7 | 11.5 | 21.1 | 20.8 | 21.2 | 129.6 | 129.3 | 129.6 | 130.2 | 129.3 | 131.4 | 130.6 | 129.7 | 129.5 |
| 10 | 26.9 | 22.8 | 23.6 | 15.0 | 23.4 | 23.0 | 23.5 | 128.8 | 128.9 | 129.0 | 129.2 | 128.9 | 115.1 | 115.7 | 120.1 | 128.7 |
| 11 | 109.3 | 20.4 | 20.5 | 31.6 | 42.7 | 38.3 | 127.5 | 127.4 | 127.7 | 127.8 | 127.3 | 157.0 | 155.0 | 150.4 | 127.4 | |
| 12 | 123.6 | 16.5 | 24.3 | 24.4 | 128.8 | 128.9 | 129.0 | 129.2 | 128.9 | 115.1 | 115.7 | 116.6 | 128.7 | |||
| 13 | - | 18.9 | 20.8 | 11.9 | 129.6 | 129.3 | 129.6 | 130.2 | 129.3 | 131.4 | 130.6 | 129.5 | 129.5 | |||
| 14 | 136.8 | 23.0 | 15.4 | 19.8 | 63.7 | 31.6 | 43.1 | 37.9 | 43.9 | 37.8 | 37.8 | 40.1 | ||||
| 15 | 111.7 | 16.4 | 23.2 | 23.3 | 23.3 | 23.3 | 23.1 | 135.3 | ||||||||
| 16 | 122.8 | 19.3 | 20.9 | 11.3 | 20.0 | 11.5 | 11.5 | 129.5 | ||||||||
| 17 | 120.0 | 22.8 | 15.1 | 22.1 | 15.1 | 15.1 | 128.7 | |||||||||
| 18 | 118.6 | 127.4 | ||||||||||||||
| 19 | 126.8 | 128.7 | ||||||||||||||
| 20 | 129.5 |
1 In CDCl3 for 1–28 and 30–32 and in CD3OD for 29. 2 Adapted (and revised when appropriate) as follows: 1 [25], 2 [27], 5 [31], 7 [35], 9 [37], 10 [38], 12 [40], 13 [41], 17 [44], 21 [37], 23 [17], 27 [17], 29 [54]. 3 Determined through HMBC correlations. 4 Recorded at 100 MHz. 5 Recorded at 237.5 MHz. 6 Recorded at 175 MHz. 7 Recorded at 150 MHz. 8 nd: not detected.