| Literature DB >> 32224980 |
Hanadi El Achi1, Joseph D Khoury2.
Abstract
Digital Pathology is the process of converting histology glass slides to digital images using sophisticated computerized technology to facilitate acquisition, evaluation, storage, and portability of histologic information. By its nature, digitization of analog histology data renders it amenable to analysis using deep learning/artificial intelligence (DL/AI) techniques. The application of DL/AI to digital pathology data holds promise, even if the scope of use cases and regulatory framework for deploying such applications in the clinical environment remains in the early stages. Recent studies using whole-slide images and DL/AI to detect histologic abnormalities in general and cancer in particular have shown encouraging results. In this review, we focus on these emerging technologies intended for use in diagnostic hematology and the evaluation of lymphoproliferative diseases.Entities:
Keywords: artificial intelligence; digital pathology; hematopathology; leukemia; lymphoma
Year: 2020 PMID: 32224980 PMCID: PMC7226574 DOI: 10.3390/cancers12040797
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1A neural network is a computer system modeled on the human brain.
Figure 2Processing pipeline of a convolutional neural network for the detection of visual categories in images. Example of a CNN model proposed previously by other authors. The convolutional layers perform feature extraction consecutively from the image patch to higher-level features. The pooling layers reduce image size by subsampling. The last fully connected layers provide prediction based on the given features. Reproduced with permission from Hanadi El Achi [32].
Studies utilizing machine learning (ML) for hematologic malignancies. PB, peripheral blood; LDA, linear discriminant analysis; HC, hairy cells; MC, mantle cells; FL, follicular lymphoma; CLL, chronic lymphocytic leukemia; SLA, supervised learning algorithms; SVM, support vector machine; BM, bone marrow; ALL, acute lymphocytic leukemia; AML, acute myelocytic leukemia; CML, chronic myeloid leukemia; KNN, K-nearest neighbor; RF, random forest; SL, simple logistic; RC, random committee; CNN, convolutional neural network; DCNN, deep convolutional neural network; ANN, artificial neural network; VE, visual estimates; DIA, digital image analysis; GMLVQ, generalized matrix relevance learning vector quantization; LDA, linear discriminant analysis; BC, Bayesian clustering; ASPIRE, anomalous sample phenotype identification with random effects; FC, flow cytometry; AUC, area under the curve; ICC, Intra-class correlation.
| Study (Reference) | Entity of Interest | Tissue | Objective | Segmentation Identification Method | Classifier | Number of Images | Accuracy |
|---|---|---|---|---|---|---|---|
| Alferez et al. [ | Lymphoid cells | PB | Recognition of atypical lymphoid cells | Clustering of color components—watershed transformation—pattern recognition-based | LDA | 4389 | 98% accuracy |
| Alferez et al. [ | Lymphoid cells | PB | Normal, reactive, HC, MC, FL, CLL, prolymphocytes | Geometry, new color and texture features—pattern recognition-based | SVM | 1500 | 91% |
| Salah [ | ALL, AML, CLL, CML | Diagnosis of leukemia | 22 studies SLA | ||||
| Ni et al. [ | CML | LN | Identify malignant myeloid cells of CML | SVM | 9 cases | ≤95.80% specificity | |
| Reta.et al. [ | ALL-AML | BM | Distinction ALL vs AML and sub-classification of ALL | Pattern recognition-based | KNN, RF, SL, SVM, RC | 633 | 94% accuracy (overall) |
| Rehman et al. [ | ALL | BM | Sub-classification of ALL | Threshold-based method | CNN | 330 | 97.78% |
| Shafique et al. [ | ALL | PB | Detection and classification of ALL | NA | DCNN | 760 after augmentation | 99% accuracy for detection |
| Bhattacharjee et al. [ | ALL | PB | Detection of ALL | Pattern recognition-based | ANN, KNN, k-means, SVM | 100% sensitivity | |
| Hagiya et al. [ | BM cellularity | BM | Assess relatedness between VE and DIA | Aperio AT2 Scanscope | 165 cases | 0.81 ICC | |
| Biehl et al. [ | FC for AML | PB, BM | Classification of AML | NA | GMLVQ | 179 cases | 100% |
| Manninen et al. [ | FC for AML | PB, BM | Classification of AML | NA | LDA | 359 cases | 100% |
| Dundar et al. [ | FC for AML | PB | Classification of AML | N/A | ASPIRE | 50,000 using the resampling technique | 99% AUC |
| Lakoumentas [ | FC for CLL | PB | FC diagnosis of CLL | NA | BC | 99% |
Studies utilizing ML for mature lymphoproliferative diagnosis, grading, and prognostication. WSI, whole slide image; RW, recursive watershed; DLBCL, diffuse large B-cell lymphoma, LN, lymph node, FL, follicular lymphoma; H&E, hematoxylin and eosin; IHC, immunohistochemistry; CI, concavity index; FLAGS, Follicular Lymphoma Grading System; GMM, Gaussian mixture model; EM, expectation maximization; ANN, artificial neural networks; SVM, support vector machine; RF, random forests; CNN, convolutional neural network.
| Study (Reference) | Entity of Interest | Tissue | Objective | Segmentation Identification Method | Classifier | Number of Images/Cases | Accuracy |
|---|---|---|---|---|---|---|---|
| Lozanski et al. [ | FL (grading) | LN | Agreement between glass slide and WSI reading | N/A | N/A | 17 cases | 95% |
| Samsi et al. [ | FL | LN | Detection of follicles by IHC (CD10/CD20) | Iterative watershed, color and texture features | Unsupervised K-means clustering algorithm | 8 images/ 12 images | 87% |
| Oger et al. [ | FL | LN | Detection of follicles by IHC (CD20) | Comparison of manual and automated segmentation | k-means classifier | 12 | |
| Belkacem-Boussaid [ | FL | LN | Detection of follicles by H&E | Region-based segmentation, | NA | 78% | |
| Belkacem-Boussaid [ | FL | LN | Identification of centroblasts | Geometric and texture features extraction | Supervised quadratic discriminant analysis | 436 images | 82% |
| Fauzi [ | FL | LN | Grading of FL (H&E, CD20) | Geometric and color features; Manual extraction | k-nearest neighbor classifier—FLAGS | 20 slides | 80% |
| Sertel et al. [ | FL | LN | Grading of FL (H&E) | K-means clustering algorithm and spatial distribution | Bayesian classifier | 510 images | 98.9% sensitivity 98.7% specificity for grade III |
| Sertel et al. [ | FL | LN | GMM and EM unitone conversion of colors | 100 images | 80% | ||
| Da Costa et al. [ | DLBCL | LN | Sub-classification of DLBCL (GC/non-GC) | N/A | J48 (WEKA package) | 475 cases | 92% |
| Perfecto-Avalos et al. [ | DLBCL | LN | Sub-classification of DLBCL (GC/non-GC) | N/A | ANN and SVM | 49 patients | 94% accuracy |
| Zhao et al. [ | DLBCL | LN | Outcome of patients after treatment based on the molecular subtyping algorithms | N/A | SVM | 855 cases | 94% |
| Biccler et al. [ | DLBCL | LN | Prediction of prognosis | N/A | Stacking approach of ML | 5173 cases | Excellent concordance |
| Santiago et al. [ | DLBCL | LN | Treatment resistance to R-CHOP | Manual contouring | 2D and 3D CT radiomic analysis with RF and SVM | 254 lymph nodes | 75% accuracy |
| El Achi et al. [ | Lymphoma | LN | Diagnosis of four lymphoma subsets | Unsupervised | CNN | 2560 images | 100% |